Wall clock time and date at job start Tue Mar 31 2020 18:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46938 * 2 1 4 4 C 1.47196 * 109.46948 * 120.00090 * 2 1 3 5 5 N 2.60802 * 109.47068 * 120.00080 * 2 1 3 6 6 C 1.52992 * 109.46944 * 240.00070 * 2 1 3 7 7 N 1.46898 * 109.47183 * 64.73425 * 6 2 1 8 8 C 1.46902 * 110.99947 * 190.07592 * 7 6 2 9 9 C 1.46898 * 111.00188 * 66.12062 * 7 6 2 10 10 C 1.50699 * 109.47607 * 189.99834 * 9 7 6 11 11 O 1.21298 * 119.99398 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00342 * 179.97438 * 10 9 7 13 13 C 1.39941 * 120.00065 * 185.21130 * 12 10 9 14 14 C 1.38681 * 120.11220 * 24.44687 * 13 12 10 15 15 C 1.38227 * 120.01703 * 180.02562 * 14 13 12 16 16 C 1.38396 * 120.24684 * 359.95727 * 15 14 13 17 17 C 1.38076 * 120.23379 * 0.02562 * 16 15 14 18 18 C 1.38991 * 119.97533 * 0.02562 * 17 16 15 19 19 S 1.76208 * 120.12488 * 179.97438 * 18 17 16 20 20 C 1.76201 * 99.99819 * 7.09239 * 19 18 17 21 21 H 1.08006 * 119.99670 * 5.59510 * 20 19 18 22 22 C 1.38684 * 120.00158 * 185.59406 * 20 19 18 23 23 N 1.31657 * 119.99550 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46905 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47088 * 119.99820 * 24 22 20 27 27 H 1.48499 * 109.47351 * 240.00308 * 24 22 20 28 28 H 1.08993 * 109.46893 * 184.97288 * 1 2 3 29 29 H 1.09000 * 109.46809 * 304.97243 * 1 2 3 30 30 H 1.08993 * 109.47207 * 64.97016 * 1 2 3 31 31 H 1.09000 * 109.47225 * 304.73514 * 6 2 1 32 32 H 1.09001 * 109.47283 * 184.73147 * 6 2 1 33 33 H 1.09001 * 109.46975 * 301.00553 * 8 7 6 34 34 H 1.08993 * 109.47527 * 61.00413 * 8 7 6 35 35 H 1.09001 * 109.47098 * 181.00871 * 8 7 6 36 36 H 1.09011 * 109.46756 * 69.99980 * 9 7 6 37 37 H 1.09000 * 109.46951 * 310.00322 * 9 7 6 38 38 H 0.96994 * 120.00004 * 5.20990 * 12 10 9 39 39 H 1.07992 * 119.99309 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.87026 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.88265 * 179.74563 * 16 15 14 42 42 H 1.08006 * 120.01356 * 179.97438 * 17 16 15 43 43 H 0.97000 * 119.99361 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7212 -1.2492 7 7 1.6459 0.0341 -2.4459 8 6 1.9055 -0.7407 -3.6667 9 6 2.3249 1.3359 -2.4941 10 6 1.7205 2.1776 -3.5883 11 8 0.8129 1.7365 -4.2614 12 7 2.1876 3.4207 -3.8183 13 6 1.5566 4.2424 -4.7590 14 6 0.2235 4.0357 -5.0803 15 6 -0.3977 4.8482 -6.0102 16 6 0.3057 5.8703 -6.6233 17 6 1.6333 6.0854 -6.3108 18 6 2.2676 5.2735 -5.3780 19 16 3.9619 5.5441 -4.9768 20 6 4.2498 7.0418 -5.8593 21 1 3.4309 7.5430 -6.3539 22 6 5.5279 7.5768 -5.9190 23 7 6.5260 6.9659 -5.3156 24 14 5.8333 9.1641 -6.8552 25 1 4.5563 9.6483 -7.4385 26 1 6.3735 10.1900 -5.9273 27 1 6.8126 8.9163 -7.9436 28 1 -0.3633 -1.0237 0.0891 29 1 -0.3633 0.5891 0.8421 30 1 -0.3633 0.4348 -0.9311 31 1 1.6091 -1.7214 -1.2926 32 1 3.1267 -0.7952 -1.2079 33 1 2.9663 -0.9848 -3.7233 34 1 1.3217 -1.6608 -3.6441 35 1 1.6214 -0.1512 -4.5384 36 1 3.3856 1.1851 -2.6956 37 1 2.2055 1.8436 -1.5371 38 1 2.9612 3.7458 -3.3317 39 1 -0.3295 3.2398 -4.6039 40 1 -1.4359 4.6848 -6.2589 41 1 -0.1843 6.4990 -7.3520 42 1 2.1790 6.8839 -6.7918 43 1 7.4200 7.3400 -5.3577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505786368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:40 Heat of formation + Delta-G solvation = 29.134832 kcal Electronic energy + Delta-G solvation = -25234.631453 eV Core-core repulsion = 21599.505450 eV Total energy + Delta-G solvation = -3635.126003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36211 -38.71523 -37.64252 -36.45619 -34.41612 -33.39607 -32.79222 -30.34823 -29.89951 -27.80953 -27.33450 -25.91576 -24.59211 -22.77781 -22.25701 -21.29121 -19.96896 -18.43113 -18.02936 -17.16545 -16.80885 -16.17097 -15.69003 -15.57281 -15.32625 -15.05972 -14.68673 -14.42263 -14.09338 -13.80118 -13.68775 -13.26352 -13.24519 -13.04472 -12.94281 -12.77979 -12.59736 -12.47036 -12.00080 -11.95247 -11.75691 -11.71336 -11.50707 -11.32280 -11.27219 -11.08225 -11.06735 -10.42268 -10.14222 -9.87739 -9.59252 -9.34909 -8.81585 -8.70057 -8.61746 -7.67359 -6.58755 -6.54464 -4.28104 1.82665 2.06734 2.39737 2.47361 2.83904 2.94947 3.06028 3.08999 3.15471 3.30765 3.51805 3.93863 3.98430 4.33351 4.44087 4.55503 4.69015 4.75883 4.86554 5.00321 5.04023 5.11246 5.20683 5.23074 5.41035 5.44207 5.55905 5.62818 5.64607 5.66539 5.87500 5.96531 6.00075 6.16601 6.20653 6.54531 6.56902 6.68071 6.83353 6.89406 7.09988 7.20824 7.24073 7.40964 7.66686 7.74948 8.09560 8.35746 8.92077 10.50281 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002776 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.279118 B =10085.487894 C =11376.984789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.003 3.997 3 H 0.115 0.885 4 C 0.212 3.788 5 N -0.436 5.436 6 C 0.062 3.938 7 N -0.517 5.517 8 C 0.018 3.982 9 C 0.026 3.974 10 C 0.512 3.488 11 O -0.509 6.509 12 N -0.657 5.657 13 C 0.127 3.873 14 C -0.112 4.112 15 C -0.146 4.146 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.108 4.108 19 S 0.028 5.972 20 C -0.543 4.543 21 H 0.095 0.905 22 C 0.077 3.923 23 N -0.865 5.865 24 Si 0.925 3.075 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.411 0.589 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -10.666 5.515 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 H 0.133 0.867 4 C -0.106 4.106 5 N -0.112 5.112 6 C -0.068 4.068 7 N -0.241 5.241 8 C -0.129 4.129 9 C -0.105 4.105 10 C 0.299 3.701 11 O -0.385 6.385 12 N -0.302 5.302 13 C 0.025 3.975 14 C -0.134 4.134 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.225 4.225 19 S 0.282 5.718 20 C -0.690 4.690 21 H 0.113 0.887 22 C -0.133 4.133 23 N -0.499 5.499 24 Si 0.750 3.250 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.248 0.752 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.597 -12.325 7.288 16.702 hybrid contribution 0.680 1.978 -1.488 2.567 sum -7.917 -10.348 5.801 14.262 Atomic orbital electron populations 1.21763 0.90849 1.02962 1.04205 1.18945 0.98380 0.98983 0.85594 0.86734 1.29174 0.93177 0.93690 0.94573 1.81242 1.09026 1.09453 1.11477 1.22109 0.98813 0.97647 0.88189 1.61593 1.57598 1.02417 1.02481 1.22583 0.98783 0.98675 0.92869 1.22121 0.97540 0.91576 0.99265 1.20404 0.83707 0.81245 0.84790 1.90625 1.28970 1.70998 1.47876 1.43420 1.32840 1.13757 1.40156 1.17180 0.91718 0.93898 0.94670 1.21119 0.92461 1.00393 0.99386 1.20777 0.99331 0.97188 0.99632 1.20972 0.94595 0.98171 1.00221 1.21278 0.94802 1.00726 0.98503 1.22454 1.02158 0.98587 0.99283 1.83040 0.98029 1.30885 1.59893 1.23278 0.97700 1.08512 1.39512 0.88741 1.25092 0.94774 0.98475 0.94971 1.70004 1.00818 1.38835 1.40247 0.86001 0.78818 0.80934 0.79249 1.19127 1.20273 1.20267 0.92122 0.92188 0.88782 0.89156 0.93539 0.95744 0.91126 0.88828 0.91042 0.87286 0.75204 0.84323 0.87017 0.87168 0.84482 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.09 37.16 0.34 -0.49 16 2 C 0.00 0.02 2.70 -93.41 -0.25 -0.24 16 3 H 0.12 0.55 6.18 -51.93 -0.32 0.23 16 4 C 0.21 1.85 14.64 -20.76 -0.30 1.54 16 5 N -0.44 -5.14 18.54 42.16 0.78 -4.36 16 6 C 0.06 0.40 4.31 -3.83 -0.02 0.38 16 7 N -0.52 -4.41 3.86 -244.37 -0.94 -5.35 16 8 C 0.02 0.17 9.21 60.07 0.55 0.72 16 9 C 0.03 0.23 5.31 -4.98 -0.03 0.21 16 10 C 0.51 6.83 7.33 -10.99 -0.08 6.74 16 11 O -0.51 -8.07 11.47 5.54 0.06 -8.00 16 12 N -0.66 -9.97 5.17 -9.70 -0.05 -10.03 16 13 C 0.13 2.34 6.45 -83.44 -0.54 1.81 16 14 C -0.11 -1.95 8.72 -39.42 -0.34 -2.30 16 15 C -0.15 -2.40 10.04 -39.53 -0.40 -2.80 16 16 C -0.12 -2.06 10.03 -39.58 -0.40 -2.45 16 17 C -0.13 -2.57 9.22 -39.36 -0.36 -2.93 16 18 C -0.11 -2.24 6.12 -38.75 -0.24 -2.48 16 19 S 0.03 0.65 20.36 -107.50 -2.19 -1.54 16 20 C -0.54 -13.94 8.99 30.90 0.28 -13.66 16 21 H 0.09 2.35 4.98 -52.48 -0.26 2.08 16 22 C 0.08 1.98 5.49 -17.46 -0.10 1.88 16 23 N -0.87 -23.24 13.22 55.48 0.73 -22.51 16 24 Si 0.92 19.76 29.55 -169.99 -5.02 14.74 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.66 7.61 -51.93 -0.40 0.26 16 31 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.09 1.12 5.81 -51.93 -0.30 0.82 16 36 H 0.07 0.58 8.12 -51.92 -0.42 0.16 16 37 H 0.11 0.72 6.01 -51.93 -0.31 0.40 16 38 H 0.41 5.81 7.64 -40.82 -0.31 5.50 16 39 H 0.14 2.35 5.75 -52.49 -0.30 2.05 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.14 2.89 5.03 -52.48 -0.26 2.62 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -30.64 371.47 -8.31 -38.95 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.40 Total: 6.56 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.88 Total: -14.06 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.52 Total: -42.24 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.06 Total: -8.00 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.19 Total: -1.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.64 -8.31 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505786368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.086 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds