Wall clock time and date at job start Tue Mar 31 2020 18:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46938 * 2 1 4 4 C 1.47196 * 109.46948 * 120.00090 * 2 1 3 5 5 N 2.60802 * 109.47068 * 120.00080 * 2 1 3 6 6 C 1.52992 * 109.46944 * 240.00070 * 2 1 3 7 7 N 1.46898 * 109.47183 * 64.73425 * 6 2 1 8 8 C 1.46902 * 110.99947 * 190.07592 * 7 6 2 9 9 C 1.46898 * 111.00188 * 66.12062 * 7 6 2 10 10 C 1.50699 * 109.47607 * 189.99834 * 9 7 6 11 11 O 1.21298 * 119.99398 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00342 * 179.97438 * 10 9 7 13 13 C 1.39941 * 120.00065 * 185.21130 * 12 10 9 14 14 C 1.38681 * 120.11220 * 24.44687 * 13 12 10 15 15 C 1.38227 * 120.01703 * 180.02562 * 14 13 12 16 16 C 1.38396 * 120.24684 * 359.95727 * 15 14 13 17 17 C 1.38076 * 120.23379 * 0.02562 * 16 15 14 18 18 C 1.38991 * 119.97533 * 0.02562 * 17 16 15 19 19 S 1.76208 * 120.12488 * 179.97438 * 18 17 16 20 20 C 1.76201 * 99.99819 * 7.09239 * 19 18 17 21 21 H 1.08006 * 119.99670 * 5.59510 * 20 19 18 22 22 C 1.38684 * 120.00158 * 185.59406 * 20 19 18 23 23 N 1.31657 * 119.99550 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46905 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47088 * 119.99820 * 24 22 20 27 27 H 1.48499 * 109.47351 * 240.00308 * 24 22 20 28 28 H 1.08993 * 109.46893 * 184.97288 * 1 2 3 29 29 H 1.09000 * 109.46809 * 304.97243 * 1 2 3 30 30 H 1.08993 * 109.47207 * 64.97016 * 1 2 3 31 31 H 1.09000 * 109.47225 * 304.73514 * 6 2 1 32 32 H 1.09001 * 109.47283 * 184.73147 * 6 2 1 33 33 H 1.09001 * 109.46975 * 301.00553 * 8 7 6 34 34 H 1.08993 * 109.47527 * 61.00413 * 8 7 6 35 35 H 1.09001 * 109.47098 * 181.00871 * 8 7 6 36 36 H 1.09011 * 109.46756 * 69.99980 * 9 7 6 37 37 H 1.09000 * 109.46951 * 310.00322 * 9 7 6 38 38 H 0.96994 * 120.00004 * 5.20990 * 12 10 9 39 39 H 1.07992 * 119.99309 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.87026 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.88265 * 179.74563 * 16 15 14 42 42 H 1.08006 * 120.01356 * 179.97438 * 17 16 15 43 43 H 0.97000 * 119.99361 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7212 -1.2492 7 7 1.6459 0.0341 -2.4459 8 6 1.9055 -0.7407 -3.6667 9 6 2.3249 1.3359 -2.4941 10 6 1.7205 2.1776 -3.5883 11 8 0.8129 1.7365 -4.2614 12 7 2.1876 3.4207 -3.8183 13 6 1.5566 4.2424 -4.7590 14 6 0.2235 4.0357 -5.0803 15 6 -0.3977 4.8482 -6.0102 16 6 0.3057 5.8703 -6.6233 17 6 1.6333 6.0854 -6.3108 18 6 2.2676 5.2735 -5.3780 19 16 3.9619 5.5441 -4.9768 20 6 4.2498 7.0418 -5.8593 21 1 3.4309 7.5430 -6.3539 22 6 5.5279 7.5768 -5.9190 23 7 6.5260 6.9659 -5.3156 24 14 5.8333 9.1641 -6.8552 25 1 4.5563 9.6483 -7.4385 26 1 6.3735 10.1900 -5.9273 27 1 6.8126 8.9163 -7.9436 28 1 -0.3633 -1.0237 0.0891 29 1 -0.3633 0.5891 0.8421 30 1 -0.3633 0.4348 -0.9311 31 1 1.6091 -1.7214 -1.2926 32 1 3.1267 -0.7952 -1.2079 33 1 2.9663 -0.9848 -3.7233 34 1 1.3217 -1.6608 -3.6441 35 1 1.6214 -0.1512 -4.5384 36 1 3.3856 1.1851 -2.6956 37 1 2.2055 1.8436 -1.5371 38 1 2.9612 3.7458 -3.3317 39 1 -0.3295 3.2398 -4.6039 40 1 -1.4359 4.6848 -6.2589 41 1 -0.1843 6.4990 -7.3520 42 1 2.1790 6.8839 -6.7918 43 1 7.4200 7.3400 -5.3577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505786368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:39 Heat of formation + Delta-G solvation = 10.879848 kcal Electronic energy + Delta-G solvation = -25235.423049 eV Core-core repulsion = 21599.505450 eV Total energy + Delta-G solvation = -3635.917599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49110 -39.65997 -38.72303 -37.27213 -35.66448 -34.69878 -34.03778 -31.82050 -31.05248 -28.81412 -27.90572 -27.82287 -25.26541 -23.99273 -23.56166 -22.25621 -21.06497 -20.07820 -18.74431 -18.27763 -18.07556 -17.54109 -16.99767 -16.66858 -16.30354 -16.10239 -15.62623 -15.58330 -15.23437 -15.02182 -14.66651 -14.54311 -14.45270 -14.09468 -13.87265 -13.73463 -13.69883 -13.34287 -13.09945 -12.99990 -12.84941 -12.77068 -12.72325 -12.60205 -12.43840 -12.09132 -12.00742 -11.62849 -11.57241 -11.37441 -11.30360 -10.60628 -10.52678 -10.30517 -9.30805 -9.07284 -8.47984 -8.29031 -6.20534 0.44868 0.59830 1.29554 1.38293 1.47650 1.62019 1.71144 1.72580 1.79636 2.07811 2.19691 2.75527 2.89152 3.05422 3.17039 3.30651 3.72828 3.81295 4.05052 4.16032 4.22947 4.33138 4.35626 4.45833 4.57934 4.62078 4.66408 4.74999 4.77048 4.80172 4.83830 5.09783 5.10297 5.17118 5.24792 5.38240 5.49322 5.52203 5.53223 5.71333 5.78632 5.88377 6.03390 6.15471 6.27879 6.56658 6.58090 6.98490 7.23002 8.60990 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002776 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.279118 B =10085.487894 C =11376.984789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 H 0.134 0.866 4 C 0.241 3.759 5 N -0.492 5.492 6 C 0.065 3.935 7 N -0.522 5.522 8 C 0.021 3.979 9 C 0.031 3.969 10 C 0.512 3.488 11 O -0.533 6.533 12 N -0.661 5.661 13 C 0.133 3.867 14 C -0.121 4.121 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.143 4.143 18 C -0.132 4.132 19 S -0.012 6.012 20 C -0.560 4.560 21 H 0.094 0.906 22 C 0.027 3.973 23 N -0.901 5.901 24 Si 0.989 3.011 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.139 0.861 38 H 0.415 0.585 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.121 0.879 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -10.925 5.495 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 H 0.151 0.849 4 C -0.076 4.076 5 N -0.169 5.169 6 C -0.064 4.064 7 N -0.246 5.246 8 C -0.126 4.126 9 C -0.100 4.100 10 C 0.301 3.699 11 O -0.409 6.409 12 N -0.306 5.306 13 C 0.030 3.970 14 C -0.143 4.143 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.248 4.248 19 S 0.239 5.761 20 C -0.708 4.708 21 H 0.112 0.888 22 C -0.179 4.179 23 N -0.536 5.536 24 Si 0.812 3.188 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.156 0.844 38 H 0.252 0.748 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.139 0.861 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.240 -12.617 7.277 17.804 hybrid contribution 0.957 1.936 -1.501 2.630 sum -9.283 -10.681 5.775 15.285 Atomic orbital electron populations 1.21724 0.90499 1.03139 1.04042 1.19066 0.98462 0.99517 0.84227 0.84851 1.29526 0.91628 0.92335 0.94157 1.81278 1.10947 1.11349 1.13315 1.22114 0.99416 0.97705 0.87135 1.61555 1.57870 1.02301 1.02891 1.22491 0.99403 0.98628 0.92114 1.22183 0.97742 0.91375 0.98700 1.21194 0.83080 0.80568 0.85079 1.90609 1.30168 1.71243 1.48925 1.43565 1.33040 1.14272 1.39697 1.17386 0.92086 0.93155 0.94330 1.21359 0.92070 1.00900 0.99946 1.21242 1.00809 0.95455 0.97667 1.21252 0.93384 0.98812 1.00714 1.21335 0.96223 1.00545 0.98764 1.22412 1.00712 1.00564 1.01126 1.82846 1.00964 1.30928 1.61395 1.23608 0.98050 1.09550 1.39547 0.88798 1.25973 0.94495 1.01624 0.95828 1.70101 1.01218 1.40492 1.41812 0.85024 0.78767 0.77065 0.77989 1.18503 1.19672 1.19846 0.92013 0.91657 0.89420 0.88345 0.92719 0.95034 0.89935 0.91768 0.89710 0.84369 0.74764 0.83518 0.83394 0.84183 0.86145 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.09 71.98 0.65 -0.62 16 2 C 0.01 0.08 2.70 -12.60 -0.03 0.05 16 3 H 0.13 0.80 6.18 -2.39 -0.01 0.79 16 4 C 0.24 3.74 14.64 89.44 1.31 5.05 16 5 N -0.49 -11.15 18.54 20.01 0.37 -10.78 16 6 C 0.07 0.65 4.31 86.30 0.37 1.02 16 7 N -0.52 -7.64 3.86 -927.06 -3.58 -11.22 16 8 C 0.02 0.36 9.21 127.69 1.18 1.53 16 9 C 0.03 0.48 5.31 85.56 0.45 0.93 16 10 C 0.51 12.96 7.33 87.66 0.64 13.61 16 11 O -0.53 -16.24 11.47 -3.09 -0.04 -16.27 16 12 N -0.66 -19.67 5.17 -303.00 -1.57 -21.24 16 13 C 0.13 4.82 6.45 38.31 0.25 5.07 16 14 C -0.12 -4.01 8.72 22.37 0.20 -3.81 16 15 C -0.13 -3.89 10.04 22.30 0.22 -3.67 16 16 C -0.12 -3.96 10.03 22.27 0.22 -3.73 16 17 C -0.14 -5.80 9.22 22.41 0.21 -5.59 16 18 C -0.13 -5.55 6.12 22.81 0.14 -5.41 16 19 S -0.01 -0.58 20.36 -56.49 -1.15 -1.73 16 20 C -0.56 -29.59 8.99 67.93 0.61 -28.98 16 21 H 0.09 4.81 4.98 -2.91 -0.01 4.80 16 22 C 0.03 1.41 5.49 84.83 0.47 1.88 16 23 N -0.90 -49.55 13.22 21.63 0.29 -49.27 16 24 Si 0.99 40.94 29.55 68.60 2.03 42.96 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 1.01 7.61 -2.39 -0.02 0.99 16 31 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 32 H 0.05 0.50 8.12 -2.39 -0.02 0.49 16 33 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.06 1.49 5.81 -2.39 -0.01 1.48 16 36 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 37 H 0.14 1.35 6.01 -2.39 -0.01 1.33 16 38 H 0.41 11.68 7.64 -92.71 -0.71 10.97 16 39 H 0.15 4.68 5.75 -2.91 -0.02 4.66 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.12 5.21 5.03 -2.91 -0.01 5.20 16 43 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -68.26 371.47 3.59 -64.67 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.35 Total: 25.55 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 6.89 Total: -22.68 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -4.49 Total: -92.50 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.04 Total: -16.27 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -1.15 Total: -1.73 kcal Total: -68.26 3.59 -64.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505786368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.549 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds