Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 N 1.46503 * 109.47354 * 120.00228 * 2 1 3 5 5 C 1.46495 * 119.99579 * 327.04317 * 4 2 1 6 6 C 1.50703 * 109.47116 * 269.99814 * 5 4 2 7 7 H 1.07998 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99875 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00075 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00064 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47099 * 90.00155 * 10 8 6 12 12 H 1.48497 * 109.47390 * 210.00122 * 10 8 6 13 13 H 1.48500 * 109.47043 * 330.00338 * 10 8 6 14 14 C 1.34772 * 119.99660 * 147.04544 * 4 2 1 15 15 O 1.21363 * 119.99450 * 179.15533 * 14 4 2 16 16 C 1.49343 * 120.00519 * 359.43247 * 14 4 2 17 17 O 1.21378 * 119.99704 * 8.79255 * 16 14 4 18 18 N 1.34775 * 120.00062 * 188.78432 * 16 14 4 19 19 C 1.39291 * 120.00123 * 185.55367 * 18 16 14 20 20 C 1.38841 * 120.14001 * 18.32750 * 19 18 16 21 21 C 1.38048 * 120.10097 * 179.69715 * 20 19 18 22 22 C 1.38735 * 120.38251 * 0.59907 * 21 20 19 23 23 F 1.35104 * 119.85676 * 179.70385 * 22 21 20 24 24 C 1.38050 * 120.28374 * 359.67652 * 22 21 20 25 25 C 1.39678 * 119.89662 * 0.02562 * 24 22 21 26 26 C 1.43200 * 120.18823 * 180.02562 * 25 24 22 27 27 N 7.47771 * 133.29480 * 180.96916 * 2 1 3 28 28 H 1.08997 * 109.46725 * 299.43338 * 1 2 3 29 29 H 1.08998 * 109.47135 * 59.43231 * 1 2 3 30 30 H 1.09002 * 109.46904 * 179.43439 * 1 2 3 31 31 H 1.08999 * 109.46725 * 240.00415 * 2 1 3 32 32 H 1.09007 * 109.47301 * 181.36286 * 3 2 1 33 33 H 1.09005 * 109.47117 * 301.36306 * 3 2 1 34 34 H 1.09002 * 109.47377 * 61.36044 * 3 2 1 35 35 H 1.08997 * 109.47667 * 30.00207 * 5 4 2 36 36 H 1.09004 * 109.46432 * 150.00483 * 5 4 2 37 37 H 0.97000 * 120.00042 * 179.97438 * 9 8 6 38 38 H 0.97000 * 119.99792 * 5.56656 * 18 16 14 39 39 H 1.07998 * 119.94927 * 359.97168 * 20 19 18 40 40 H 1.07992 * 119.80846 * 180.30256 * 21 20 19 41 41 H 1.08000 * 120.04914 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.2589 -0.6157 2.4466 6 6 1.7272 0.5713 3.2484 7 1 2.5118 1.2066 2.8647 8 6 1.1540 0.8463 4.4718 9 7 1.5623 1.8824 5.1713 10 14 -0.2037 -0.2520 5.1352 11 1 0.3946 -1.3470 5.9405 12 1 -1.1157 0.5496 5.9899 13 1 -0.9690 -0.8320 4.0025 14 6 3.1664 -1.3949 1.1460 15 8 3.5789 -1.9543 2.1409 16 6 3.9341 -1.4817 -0.1320 17 8 3.6151 -0.7934 -1.0795 18 7 4.9811 -2.3243 -0.2333 19 6 5.7678 -2.3226 -1.3828 20 6 5.7358 -1.2371 -2.2478 21 6 6.5205 -1.2335 -3.3836 22 6 7.3364 -2.3168 -3.6761 23 9 8.0956 -2.3046 -4.7937 24 6 7.3763 -3.4069 -2.8300 25 6 6.5918 -3.4203 -1.6744 26 6 6.6288 -4.5475 -0.7920 27 7 6.6579 -5.4418 -0.0921 28 1 -0.3633 0.5050 0.8950 29 1 -0.3633 0.5226 -0.8848 30 1 -0.3633 -1.0276 -0.0101 31 1 1.8933 -0.5138 -0.8900 32 1 3.1298 1.4427 -0.0244 33 1 1.6568 1.9634 -0.8775 34 1 1.6967 1.9493 0.9019 35 1 0.1980 -0.5063 2.2214 36 1 1.4161 -1.5278 3.0223 37 1 1.1587 2.0761 6.0319 38 1 5.1866 -2.9321 0.4942 39 1 5.0993 -0.3923 -2.0296 40 1 6.4956 -0.3846 -4.0506 41 1 8.0131 -4.2479 -3.0612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525863248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = -27.141916 kcal Electronic energy + Delta-G solvation = -28242.017307 eV Core-core repulsion = 24038.237784 eV Total energy + Delta-G solvation = -4203.779522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.21808 -41.47165 -39.71042 -38.19953 -36.71157 -36.66339 -34.98459 -32.81357 -31.93168 -31.17835 -30.01451 -28.59765 -26.74890 -25.25163 -24.65359 -23.14112 -22.06282 -21.05596 -20.11676 -19.33168 -18.08721 -17.56478 -17.07827 -16.80443 -16.44631 -16.18277 -15.99239 -15.69203 -15.19630 -14.68923 -14.53058 -14.31961 -14.23286 -13.86050 -13.70590 -13.67994 -13.48520 -13.22356 -12.83618 -12.64255 -12.61497 -12.52527 -12.11235 -12.02391 -11.74327 -11.41615 -11.23922 -11.02938 -10.94409 -10.81765 -10.56922 -10.31760 -10.13146 -9.61614 -9.57132 -8.95721 -8.66713 -8.46271 -7.98732 -6.16860 -4.16641 0.13827 0.61301 1.57226 2.19939 2.26731 2.49598 3.22417 3.24172 3.28064 3.30630 3.30857 3.45964 3.62644 3.95443 4.22651 4.31220 4.36116 4.48665 4.74504 4.83646 5.15033 5.20636 5.31143 5.48976 5.49689 5.55519 5.67961 5.81892 5.89983 6.05290 6.11942 6.24041 6.33500 6.37628 6.51195 6.55492 6.71562 6.78547 6.89406 7.01361 7.08692 7.45917 7.49319 7.89201 8.27181 8.46978 8.86333 9.41656 10.95868 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.003080 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.777976 B = 9089.432693 C = 9931.399023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 C -0.153 4.153 4 N -0.544 5.544 5 C 0.206 3.794 6 C -0.529 4.529 7 H 0.079 0.921 8 C 0.075 3.925 9 N -0.893 5.893 10 Si 0.872 3.128 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.497 3.503 15 O -0.518 6.518 16 C 0.514 3.486 17 O -0.482 6.482 18 N -0.645 5.645 19 C 0.199 3.801 20 C -0.117 4.117 21 C -0.094 4.094 22 C 0.074 3.926 23 F -0.135 7.135 24 C -0.082 4.082 25 C -0.038 4.038 26 C 0.245 3.755 27 N -0.395 5.395 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.426 0.574 39 H 0.180 0.820 40 H 0.149 0.851 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -6.151 -19.487 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 C -0.211 4.211 4 N -0.275 5.275 5 C 0.087 3.913 6 C -0.567 4.567 7 H 0.097 0.903 8 C -0.128 4.128 9 N -0.531 5.531 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.277 3.723 15 O -0.395 6.395 16 C 0.299 3.701 17 O -0.356 6.356 18 N -0.289 5.289 19 C 0.098 3.902 20 C -0.137 4.137 21 C -0.115 4.115 22 C 0.054 3.946 23 F -0.114 7.114 24 C -0.104 4.104 25 C -0.045 4.045 26 C -0.070 4.070 27 N -0.070 5.070 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.264 0.736 39 H 0.197 0.803 40 H 0.167 0.833 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.780 -7.191 -18.295 20.794 hybrid contribution -0.342 -0.399 0.435 0.682 sum 6.438 -7.591 -17.861 20.447 Atomic orbital electron populations 1.22171 0.95032 1.01876 1.03010 1.21807 0.94482 0.94637 0.88132 1.22098 1.00962 0.95565 1.02474 1.48041 1.20712 1.45423 1.13308 1.19972 0.91845 0.98877 0.80653 1.21241 1.22028 1.10409 1.03061 0.90283 1.24826 0.96679 0.94995 0.96264 1.69879 1.42363 1.27403 1.13463 0.86916 0.82358 0.81093 0.79745 1.19870 1.20961 1.18998 1.19341 0.83194 0.82583 0.87213 1.90788 1.66875 1.46544 1.35259 1.21087 0.80227 0.79148 0.89656 1.90514 1.64487 1.41506 1.39133 1.43306 1.27907 1.39551 1.18144 1.17824 0.91223 0.92999 0.88109 1.21721 1.00179 0.98533 0.93231 1.21372 0.94344 0.97854 0.97880 1.17369 0.95491 0.96210 0.85570 1.91534 1.73819 1.96756 1.49242 1.20845 0.98873 0.98564 0.92072 1.15320 1.04360 0.89600 0.95225 1.25361 0.94529 0.93332 0.93785 1.81338 1.07389 1.09851 1.08419 0.90723 0.91749 0.92865 0.86839 0.93106 0.92682 0.90598 0.93588 0.94378 0.92433 0.73577 0.80343 0.83329 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.33 37.16 0.31 -2.04 16 2 C 0.11 1.79 2.62 -67.93 -0.18 1.61 16 3 C -0.15 -2.46 9.15 37.16 0.34 -2.12 16 4 N -0.54 -10.54 2.39 -168.02 -0.40 -10.95 16 5 C 0.21 4.68 3.90 -5.19 -0.02 4.66 16 6 C -0.53 -14.22 9.23 -34.44 -0.32 -14.53 16 7 H 0.08 2.33 7.65 -52.49 -0.40 1.93 16 8 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 10 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 14 C 0.50 9.38 7.73 -11.64 -0.09 9.30 16 15 O -0.52 -11.34 16.11 5.49 0.09 -11.26 16 16 C 0.51 7.52 7.58 -11.64 -0.09 7.43 16 17 O -0.48 -6.65 9.19 5.47 0.05 -6.60 16 18 N -0.65 -7.98 5.20 -10.09 -0.05 -8.03 16 19 C 0.20 2.03 6.52 -83.47 -0.54 1.49 16 20 C -0.12 -1.07 8.79 -39.43 -0.35 -1.42 16 21 C -0.09 -0.69 10.01 -39.47 -0.39 -1.08 16 22 C 0.07 0.56 7.29 -39.47 -0.29 0.27 16 23 F -0.13 -1.10 17.26 2.25 0.04 -1.07 16 24 C -0.08 -0.60 9.73 -39.11 -0.38 -0.98 16 25 C -0.04 -0.35 5.75 -106.65 -0.61 -0.96 16 26 C 0.25 2.66 14.18 -22.47 -0.32 2.34 16 27 N -0.39 -5.16 18.54 41.84 0.78 -4.39 16 28 H 0.07 1.22 6.56 -51.93 -0.34 0.88 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.66 4.97 -52.58 -0.26 1.40 16 32 H 0.05 0.83 7.60 -51.93 -0.39 0.44 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.45 7.05 -51.93 -0.37 1.08 16 35 H 0.05 0.99 4.68 -51.93 -0.24 0.75 16 36 H 0.04 0.92 6.86 -51.93 -0.36 0.56 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.43 5.34 7.28 -40.82 -0.30 5.05 16 39 H 0.18 1.81 5.31 -52.49 -0.28 1.53 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -30.93 353.96 -5.31 -36.24 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.22 Total: 4.54 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -3.03 Total: 5.96 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 1.10 Total: -49.04 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.14 Total: -17.86 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.93 -5.31 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.097 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds