Wall clock time and date at job start Tue Mar 31 2020 17:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 N 1.46503 * 109.47354 * 120.00228 * 2 1 3 5 5 C 1.46495 * 119.99579 * 327.04317 * 4 2 1 6 6 C 1.50703 * 109.47116 * 269.99814 * 5 4 2 7 7 H 1.07998 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99875 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00075 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00064 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47099 * 90.00155 * 10 8 6 12 12 H 1.48497 * 109.47390 * 210.00122 * 10 8 6 13 13 H 1.48500 * 109.47043 * 330.00338 * 10 8 6 14 14 C 1.34772 * 119.99660 * 147.04544 * 4 2 1 15 15 O 1.21363 * 119.99450 * 179.15533 * 14 4 2 16 16 C 1.49343 * 120.00519 * 359.43247 * 14 4 2 17 17 O 1.21378 * 119.99704 * 8.79255 * 16 14 4 18 18 N 1.34775 * 120.00062 * 188.78432 * 16 14 4 19 19 C 1.39291 * 120.00123 * 185.55367 * 18 16 14 20 20 C 1.38841 * 120.14001 * 18.32750 * 19 18 16 21 21 C 1.38048 * 120.10097 * 179.69715 * 20 19 18 22 22 C 1.38735 * 120.38251 * 0.59907 * 21 20 19 23 23 F 1.35104 * 119.85676 * 179.70385 * 22 21 20 24 24 C 1.38050 * 120.28374 * 359.67652 * 22 21 20 25 25 C 1.39678 * 119.89662 * 0.02562 * 24 22 21 26 26 C 1.43200 * 120.18823 * 180.02562 * 25 24 22 27 27 N 7.47771 * 133.29480 * 180.96916 * 2 1 3 28 28 H 1.08997 * 109.46725 * 299.43338 * 1 2 3 29 29 H 1.08998 * 109.47135 * 59.43231 * 1 2 3 30 30 H 1.09002 * 109.46904 * 179.43439 * 1 2 3 31 31 H 1.08999 * 109.46725 * 240.00415 * 2 1 3 32 32 H 1.09007 * 109.47301 * 181.36286 * 3 2 1 33 33 H 1.09005 * 109.47117 * 301.36306 * 3 2 1 34 34 H 1.09002 * 109.47377 * 61.36044 * 3 2 1 35 35 H 1.08997 * 109.47667 * 30.00207 * 5 4 2 36 36 H 1.09004 * 109.46432 * 150.00483 * 5 4 2 37 37 H 0.97000 * 120.00042 * 179.97438 * 9 8 6 38 38 H 0.97000 * 119.99792 * 5.56656 * 18 16 14 39 39 H 1.07998 * 119.94927 * 359.97168 * 20 19 18 40 40 H 1.07992 * 119.80846 * 180.30256 * 21 20 19 41 41 H 1.08000 * 120.04914 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.2589 -0.6157 2.4466 6 6 1.7272 0.5713 3.2484 7 1 2.5118 1.2066 2.8647 8 6 1.1540 0.8463 4.4718 9 7 1.5623 1.8824 5.1713 10 14 -0.2037 -0.2520 5.1352 11 1 0.3946 -1.3470 5.9405 12 1 -1.1157 0.5496 5.9899 13 1 -0.9690 -0.8320 4.0025 14 6 3.1664 -1.3949 1.1460 15 8 3.5789 -1.9543 2.1409 16 6 3.9341 -1.4817 -0.1320 17 8 3.6151 -0.7934 -1.0795 18 7 4.9811 -2.3243 -0.2333 19 6 5.7678 -2.3226 -1.3828 20 6 5.7358 -1.2371 -2.2478 21 6 6.5205 -1.2335 -3.3836 22 6 7.3364 -2.3168 -3.6761 23 9 8.0956 -2.3046 -4.7937 24 6 7.3763 -3.4069 -2.8300 25 6 6.5918 -3.4203 -1.6744 26 6 6.6288 -4.5475 -0.7920 27 7 6.6579 -5.4418 -0.0921 28 1 -0.3633 0.5050 0.8950 29 1 -0.3633 0.5226 -0.8848 30 1 -0.3633 -1.0276 -0.0101 31 1 1.8933 -0.5138 -0.8900 32 1 3.1298 1.4427 -0.0244 33 1 1.6568 1.9634 -0.8775 34 1 1.6967 1.9493 0.9019 35 1 0.1980 -0.5063 2.2214 36 1 1.4161 -1.5278 3.0223 37 1 1.1587 2.0761 6.0319 38 1 5.1866 -2.9321 0.4942 39 1 5.0993 -0.3923 -2.0296 40 1 6.4956 -0.3846 -4.0506 41 1 8.0131 -4.2479 -3.0612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525863248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:17 Heat of formation + Delta-G solvation = -46.668698 kcal Electronic energy + Delta-G solvation = -28242.864052 eV Core-core repulsion = 24038.237784 eV Total energy + Delta-G solvation = -4204.626267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.85480 -42.57688 -40.82897 -39.38361 -38.08152 -37.60468 -36.02354 -34.83799 -32.70538 -32.64296 -30.95603 -30.25547 -28.06546 -26.52293 -25.39725 -24.52188 -23.38403 -22.28840 -21.21434 -20.26408 -19.19414 -19.05065 -18.66896 -17.92890 -17.37525 -17.21016 -16.96565 -16.68915 -16.53341 -16.12509 -15.69550 -15.41677 -15.17062 -15.05088 -14.93731 -14.77669 -14.58529 -14.35176 -14.03912 -13.93755 -13.78530 -13.63597 -13.47718 -13.34128 -13.06836 -12.80405 -12.62618 -12.36377 -12.31748 -12.12202 -11.94598 -11.84901 -11.71072 -11.49556 -10.79980 -10.35134 -10.18562 -9.63877 -9.24079 -8.31241 -6.35727 -0.63825 -0.13555 0.42368 1.06013 1.34544 1.37495 1.37958 1.45170 1.70724 1.97542 2.31643 2.34674 2.51363 2.60745 3.00216 3.07810 3.30017 3.56486 3.86936 3.95978 4.06141 4.08715 4.26842 4.45740 4.57083 4.64635 4.77875 4.82647 4.88237 4.89228 4.90954 5.02534 5.06674 5.14970 5.15341 5.30578 5.43655 5.51780 5.53781 5.66040 5.70858 6.15936 6.23813 6.30800 6.47734 6.65946 6.88874 7.27024 8.84995 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.003080 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.777976 B = 9089.432693 C = 9931.399023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 C -0.145 4.145 4 N -0.552 5.552 5 C 0.214 3.786 6 C -0.527 4.527 7 H 0.036 0.964 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.938 3.062 11 H -0.277 1.277 12 H -0.278 1.278 13 H -0.235 1.235 14 C 0.486 3.514 15 O -0.558 6.558 16 C 0.526 3.474 17 O -0.473 6.473 18 N -0.639 5.639 19 C 0.182 3.818 20 C -0.120 4.120 21 C -0.078 4.078 22 C 0.079 3.921 23 F -0.134 7.134 24 C -0.067 4.067 25 C -0.037 4.037 26 C 0.267 3.733 27 N -0.438 5.438 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.136 0.864 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.423 0.577 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 -7.090 -22.651 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 C -0.203 4.203 4 N -0.282 5.282 5 C 0.093 3.907 6 C -0.565 4.565 7 H 0.054 0.946 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.761 3.239 11 H -0.202 1.202 12 H -0.204 1.204 13 H -0.158 1.158 14 C 0.268 3.732 15 O -0.438 6.438 16 C 0.310 3.690 17 O -0.347 6.347 18 N -0.282 5.282 19 C 0.083 3.917 20 C -0.140 4.140 21 C -0.098 4.098 22 C 0.059 3.941 23 F -0.113 7.113 24 C -0.088 4.088 25 C -0.044 4.044 26 C -0.048 4.048 27 N -0.114 5.114 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.261 0.739 39 H 0.189 0.811 40 H 0.192 0.808 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.422 -8.133 -21.536 23.899 hybrid contribution -0.047 -0.032 1.266 1.268 sum 6.375 -8.165 -20.269 22.763 Atomic orbital electron populations 1.22165 0.93468 1.02739 1.03405 1.22131 0.95840 0.94125 0.87287 1.22022 1.00386 0.95893 1.02039 1.48131 1.20949 1.45918 1.13235 1.19659 0.93195 0.96086 0.81770 1.21429 1.20569 1.10966 1.03567 0.94558 1.25748 0.99521 0.96451 0.96621 1.70035 1.44430 1.29696 1.14164 0.85858 0.79378 0.78843 0.79816 1.20246 1.20375 1.15787 1.20115 0.83000 0.81512 0.88556 1.90753 1.67806 1.47967 1.37232 1.20042 0.80782 0.80232 0.87991 1.90509 1.64613 1.41505 1.38109 1.43126 1.27454 1.38672 1.18969 1.17949 0.91853 0.94127 0.87736 1.21625 1.00787 0.97868 0.93725 1.21572 0.92766 0.98390 0.97052 1.17394 0.95163 0.96152 0.85381 1.91550 1.73776 1.96732 1.49203 1.21038 0.97893 0.99139 0.90756 1.15258 1.04808 0.88677 0.95610 1.25557 0.93249 0.92942 0.93063 1.81360 1.08951 1.11379 1.09731 0.93098 0.88483 0.91807 0.84725 0.94047 0.89265 0.94487 0.91563 0.95684 0.92360 0.73859 0.81141 0.80805 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 8.33 71.98 0.60 -3.65 16 2 C 0.11 3.29 2.62 44.99 0.12 3.41 16 3 C -0.15 -4.62 9.15 71.98 0.66 -3.96 16 4 N -0.55 -21.55 2.39 -803.84 -1.92 -23.47 16 5 C 0.21 9.83 3.90 85.64 0.33 10.17 16 6 C -0.53 -29.46 9.23 25.60 0.24 -29.22 16 7 H 0.04 2.28 7.65 -2.91 -0.02 2.26 16 8 C 0.01 0.84 5.47 84.65 0.46 1.31 16 9 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 10 Si 0.94 42.74 27.47 68.60 1.88 44.62 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.23 -9.46 6.54 99.48 0.65 -8.81 16 14 C 0.49 18.71 7.73 87.24 0.67 19.38 16 15 O -0.56 -25.37 16.11 -3.29 -0.05 -25.42 16 16 C 0.53 15.15 7.58 87.24 0.66 15.81 16 17 O -0.47 -12.31 9.19 -3.34 -0.03 -12.34 16 18 N -0.64 -15.49 5.20 -304.18 -1.58 -17.07 16 19 C 0.18 3.43 6.52 38.61 0.25 3.68 16 20 C -0.12 -1.92 8.79 22.37 0.20 -1.73 16 21 C -0.08 -0.87 10.01 22.34 0.22 -0.64 16 22 C 0.08 0.92 7.29 22.34 0.16 1.08 16 23 F -0.13 -1.70 17.26 44.97 0.78 -0.93 16 24 C -0.07 -0.76 9.73 22.57 0.22 -0.54 16 25 C -0.04 -0.60 5.75 -21.18 -0.12 -0.72 16 26 C 0.27 5.51 14.18 88.33 1.25 6.76 16 27 N -0.44 -11.36 18.54 19.00 0.35 -11.01 16 28 H 0.05 1.60 6.56 -2.39 -0.02 1.58 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.14 3.61 4.97 -12.84 -0.06 3.55 16 32 H 0.04 1.36 7.60 -2.38 -0.02 1.34 16 33 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.04 1.45 7.05 -2.39 -0.02 1.43 16 35 H 0.07 2.79 4.68 -2.39 -0.01 2.78 16 36 H 0.03 1.22 6.86 -2.38 -0.02 1.21 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.42 10.75 7.28 -92.71 -0.68 10.08 16 39 H 0.17 3.10 5.31 -3.11 -0.02 3.08 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -70.97 353.96 5.99 -64.98 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.33 Total: 17.29 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 5.93 Total: 21.14 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -2.85 Total: -109.35 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.08 Total: -37.77 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Total: -70.97 5.99 -64.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.314 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds