Wall clock time and date at job start Tue Mar 31 2020 17:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47207 * 2 1 4 4 N 1.46497 * 109.46512 * 119.99784 * 2 1 3 5 5 C 1.46497 * 120.00422 * 304.44592 * 4 2 1 6 6 C 1.50697 * 109.47463 * 263.60751 * 5 4 2 7 7 H 1.08002 * 119.99745 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00241 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99869 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99785 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47557 * 59.99876 * 10 8 6 12 12 H 1.48507 * 109.47066 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47346 * 299.99521 * 10 8 6 14 14 C 1.34782 * 120.00107 * 124.45043 * 4 2 1 15 15 O 1.21364 * 119.99762 * 354.61678 * 14 4 2 16 16 C 1.49340 * 120.00147 * 174.60877 * 14 4 2 17 17 O 1.21380 * 120.00282 * 0.62481 * 16 14 4 18 18 N 1.34776 * 119.99824 * 180.61659 * 16 14 4 19 19 C 1.39843 * 120.00094 * 184.86281 * 18 16 14 20 20 C 1.39097 * 119.96619 * 144.55733 * 19 18 16 21 21 C 1.38119 * 120.26649 * 180.02562 * 20 19 18 22 22 C 1.38313 * 120.20802 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.03411 * 179.97438 * 22 21 20 24 24 C 1.39881 * 119.93402 * 359.97025 * 22 21 20 25 25 C 1.43194 * 120.13230 * 179.72592 * 24 22 21 26 26 N 9.32604 * 118.35789 * 108.90423 * 2 1 3 27 27 C 1.38555 * 119.96777 * 324.53658 * 19 18 16 28 28 H 1.08993 * 109.47056 * 300.00645 * 1 2 3 29 29 H 1.09000 * 109.46608 * 60.00335 * 1 2 3 30 30 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47056 * 239.99355 * 2 1 3 32 32 H 1.08997 * 109.47526 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47336 * 299.99863 * 3 2 1 34 34 H 1.09003 * 109.47730 * 59.99568 * 3 2 1 35 35 H 1.09006 * 109.47024 * 23.60564 * 5 4 2 36 36 H 1.09000 * 109.47459 * 143.60643 * 5 4 2 37 37 H 0.96994 * 120.00143 * 180.02562 * 9 8 6 38 38 H 0.97004 * 120.00572 * 4.86275 * 18 16 14 39 39 H 1.07996 * 119.86320 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.89516 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.09968 * 0.02578 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5858 -0.2494 2.5246 6 6 2.6231 0.6739 3.1097 7 1 3.5156 0.9083 2.5484 8 6 2.4329 1.2195 4.3616 9 7 1.3460 0.9344 5.0449 10 14 3.7185 2.3645 5.0865 11 1 3.8846 3.5457 4.2019 12 1 3.2796 2.8126 6.4326 13 1 5.0130 1.6461 5.2012 14 6 2.8654 -1.7318 1.0747 15 8 3.1472 -2.1596 -0.0255 16 6 3.4574 -2.3590 2.2939 17 8 3.1669 -1.9384 3.3948 18 7 4.3141 -3.3922 2.1718 19 6 4.7894 -4.0452 3.3134 20 6 5.0144 -5.4176 3.2859 21 6 5.4833 -6.0688 4.4100 22 6 5.7319 -5.3605 5.5717 23 9 6.1900 -6.0012 6.6694 24 6 5.5087 -3.9801 5.6089 25 6 5.7592 -3.2436 6.8111 26 7 5.9597 -2.6589 7.7642 27 6 5.0362 -3.3244 4.4707 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6356 0.2783 2.4407 36 1 1.4638 -1.1166 3.1736 37 1 1.2120 1.3185 5.9254 38 1 4.6011 -3.6830 1.2920 39 1 4.8217 -5.9760 2.3819 40 1 5.6555 -7.1347 4.3821 41 1 4.8616 -2.2588 4.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526112446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:21 Heat of formation + Delta-G solvation = -37.960235 kcal Electronic energy + Delta-G solvation = -28617.132597 eV Core-core repulsion = 24412.883957 eV Total energy + Delta-G solvation = -4204.248640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.12142 -40.81382 -39.41776 -37.91764 -36.50197 -36.19933 -34.48524 -32.86172 -31.68057 -31.31710 -29.56871 -27.28397 -26.78427 -24.96048 -24.43360 -23.04082 -22.68723 -20.67872 -19.45493 -18.83794 -17.72902 -17.39697 -16.66865 -16.57502 -16.43264 -15.95475 -15.88364 -15.15818 -14.89157 -14.36027 -14.23997 -13.87601 -13.78997 -13.66302 -13.52781 -13.38171 -13.21762 -13.17747 -12.63036 -12.38955 -12.35491 -12.24550 -11.84990 -11.81923 -11.60855 -11.42897 -11.09952 -10.92281 -10.83982 -10.64251 -10.30237 -10.19380 -9.99921 -9.66533 -9.32202 -8.81564 -8.35849 -8.22258 -7.92036 -6.07239 -4.08819 0.45104 0.92055 1.94664 2.56022 2.71350 2.86219 3.28875 3.35369 3.37013 3.58867 3.67874 3.78579 3.96633 3.96976 4.41030 4.50860 4.77864 4.84295 5.02664 5.24083 5.29361 5.34063 5.52745 5.53512 5.68450 5.74767 5.89043 5.98604 6.03306 6.05407 6.19123 6.22467 6.30598 6.56811 6.66952 6.69161 6.87174 7.18111 7.33888 7.40674 7.48389 7.81187 8.01336 8.12969 8.20227 8.54474 8.90478 9.53559 11.01471 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.004583 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.750903 B = 6108.023621 C = 8160.979834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.552 5.552 5 C 0.227 3.773 6 C -0.512 4.512 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.888 5.888 10 Si 0.886 3.114 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.509 3.491 15 O -0.562 6.562 16 C 0.488 3.512 17 O -0.426 6.426 18 N -0.662 5.662 19 C 0.150 3.850 20 C -0.090 4.090 21 C -0.133 4.133 22 C 0.122 3.878 23 F -0.131 7.131 24 C -0.037 4.037 25 C 0.254 3.746 26 N -0.400 5.400 27 C -0.048 4.048 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.421 0.579 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 -12.051 -8.110 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.213 4.213 4 N -0.282 5.282 5 C 0.108 3.892 6 C -0.550 4.550 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.527 5.527 10 Si 0.714 3.286 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.204 1.204 14 C 0.291 3.709 15 O -0.444 6.444 16 C 0.270 3.730 17 O -0.292 6.292 18 N -0.311 5.311 19 C 0.055 3.945 20 C -0.111 4.111 21 C -0.153 4.153 22 C 0.099 3.901 23 F -0.110 7.110 24 C -0.042 4.042 25 C -0.061 4.061 26 N -0.075 5.075 27 C -0.071 4.071 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.259 0.741 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.391 -10.909 -6.180 13.285 hybrid contribution 0.826 0.296 0.041 0.878 sum 5.217 -10.613 -6.139 13.324 Atomic orbital electron populations 1.22133 0.94975 1.02010 1.02624 1.21047 0.94132 0.93592 0.88264 1.22090 1.01387 0.95416 1.02408 1.48389 1.41304 1.27934 1.10544 1.19943 0.95988 0.97376 0.75874 1.21116 1.05343 1.27054 1.01515 0.92819 1.24764 0.95317 0.96484 0.96554 1.69879 1.25978 1.44058 1.12756 0.86752 0.82181 0.81199 0.78435 1.20297 1.21244 1.20360 1.19617 0.81141 0.82058 0.88093 1.90653 1.62661 1.63928 1.27178 1.20549 0.80499 0.80704 0.91250 1.91012 1.55145 1.56466 1.26606 1.43251 1.45865 1.33513 1.08501 1.17521 0.98065 0.90929 0.88030 1.21010 0.99156 0.91823 0.99158 1.20793 1.02576 1.01003 0.90887 1.17574 0.99727 0.88633 0.84148 1.91530 1.86114 1.81474 1.51840 1.15803 1.07939 0.90398 0.90074 1.25226 0.94179 0.93925 0.92811 1.81219 1.08177 1.07514 1.10597 1.21463 0.93398 1.02471 0.89738 0.91180 0.91933 0.92756 0.89234 0.92777 0.92743 0.90333 0.94480 0.91882 0.92751 0.74144 0.83675 0.83307 0.81658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.10 37.16 0.34 -1.99 16 2 C 0.13 2.21 3.25 -67.93 -0.22 1.99 16 3 C -0.16 -2.51 8.91 37.15 0.33 -2.18 16 4 N -0.55 -10.76 2.37 -168.02 -0.40 -11.16 16 5 C 0.23 5.21 4.11 -5.20 -0.02 5.19 16 6 C -0.51 -12.95 6.82 -34.44 -0.23 -13.18 16 7 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.51 9.54 7.67 -11.63 -0.09 9.46 16 15 O -0.56 -10.46 15.82 5.48 0.09 -10.37 16 16 C 0.49 8.66 7.56 -11.64 -0.09 8.57 16 17 O -0.43 -9.01 9.57 5.47 0.05 -8.96 16 18 N -0.66 -8.72 5.32 -10.32 -0.05 -8.78 16 19 C 0.15 1.83 6.29 -83.77 -0.53 1.30 16 20 C -0.09 -0.77 9.95 -39.31 -0.39 -1.16 16 21 C -0.13 -1.12 10.00 -39.60 -0.40 -1.51 16 22 C 0.12 1.39 7.28 -38.94 -0.28 1.10 16 23 F -0.13 -1.59 16.80 2.25 0.04 -1.55 16 24 C -0.04 -0.51 5.74 -106.85 -0.61 -1.13 16 25 C 0.25 4.21 14.97 -22.48 -0.34 3.87 16 26 N -0.40 -7.47 18.54 41.84 0.78 -6.69 16 27 C -0.05 -0.70 8.40 -38.96 -0.33 -1.02 16 28 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.45 7.27 -51.93 -0.38 1.07 16 35 H 0.04 0.89 6.21 -51.93 -0.32 0.57 16 36 H 0.06 1.59 5.84 -51.93 -0.30 1.29 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 38 H 0.42 4.50 8.30 -40.82 -0.34 4.16 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.17 2.92 6.23 -52.49 -0.33 2.60 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -30.56 360.16 -5.76 -36.33 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.45 Total: 2.50 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -2.96 Total: 11.12 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 1.06 Total: -50.84 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.14 Total: -19.33 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.56 -5.76 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.633 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds