Wall clock time and date at job start Tue Mar 31 2020 17:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47207 * 2 1 4 4 N 1.46497 * 109.46512 * 119.99784 * 2 1 3 5 5 C 1.46497 * 120.00422 * 304.44592 * 4 2 1 6 6 C 1.50697 * 109.47463 * 263.60751 * 5 4 2 7 7 H 1.08002 * 119.99745 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00241 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99869 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99785 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47557 * 59.99876 * 10 8 6 12 12 H 1.48507 * 109.47066 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47346 * 299.99521 * 10 8 6 14 14 C 1.34782 * 120.00107 * 124.45043 * 4 2 1 15 15 O 1.21364 * 119.99762 * 354.61678 * 14 4 2 16 16 C 1.49340 * 120.00147 * 174.60877 * 14 4 2 17 17 O 1.21380 * 120.00282 * 0.62481 * 16 14 4 18 18 N 1.34776 * 119.99824 * 180.61659 * 16 14 4 19 19 C 1.39843 * 120.00094 * 184.86281 * 18 16 14 20 20 C 1.39097 * 119.96619 * 144.55733 * 19 18 16 21 21 C 1.38119 * 120.26649 * 180.02562 * 20 19 18 22 22 C 1.38313 * 120.20802 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.03411 * 179.97438 * 22 21 20 24 24 C 1.39881 * 119.93402 * 359.97025 * 22 21 20 25 25 C 1.43194 * 120.13230 * 179.72592 * 24 22 21 26 26 N 9.32604 * 118.35789 * 108.90423 * 2 1 3 27 27 C 1.38555 * 119.96777 * 324.53658 * 19 18 16 28 28 H 1.08993 * 109.47056 * 300.00645 * 1 2 3 29 29 H 1.09000 * 109.46608 * 60.00335 * 1 2 3 30 30 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47056 * 239.99355 * 2 1 3 32 32 H 1.08997 * 109.47526 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47336 * 299.99863 * 3 2 1 34 34 H 1.09003 * 109.47730 * 59.99568 * 3 2 1 35 35 H 1.09006 * 109.47024 * 23.60564 * 5 4 2 36 36 H 1.09000 * 109.47459 * 143.60643 * 5 4 2 37 37 H 0.96994 * 120.00143 * 180.02562 * 9 8 6 38 38 H 0.97004 * 120.00572 * 4.86275 * 18 16 14 39 39 H 1.07996 * 119.86320 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.89516 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.09968 * 0.02578 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5858 -0.2494 2.5246 6 6 2.6231 0.6739 3.1097 7 1 3.5156 0.9083 2.5484 8 6 2.4329 1.2195 4.3616 9 7 1.3460 0.9344 5.0449 10 14 3.7185 2.3645 5.0865 11 1 3.8846 3.5457 4.2019 12 1 3.2796 2.8126 6.4326 13 1 5.0130 1.6461 5.2012 14 6 2.8654 -1.7318 1.0747 15 8 3.1472 -2.1596 -0.0255 16 6 3.4574 -2.3590 2.2939 17 8 3.1669 -1.9384 3.3948 18 7 4.3141 -3.3922 2.1718 19 6 4.7894 -4.0452 3.3134 20 6 5.0144 -5.4176 3.2859 21 6 5.4833 -6.0688 4.4100 22 6 5.7319 -5.3605 5.5717 23 9 6.1900 -6.0012 6.6694 24 6 5.5087 -3.9801 5.6089 25 6 5.7592 -3.2436 6.8111 26 7 5.9597 -2.6589 7.7642 27 6 5.0362 -3.3244 4.4707 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6356 0.2783 2.4407 36 1 1.4638 -1.1166 3.1736 37 1 1.2120 1.3185 5.9254 38 1 4.6011 -3.6830 1.2920 39 1 4.8217 -5.9760 2.3819 40 1 5.6555 -7.1347 4.3821 41 1 4.8616 -2.2588 4.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526112446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:20 Heat of formation + Delta-G solvation = -56.789177 kcal Electronic energy + Delta-G solvation = -28617.949081 eV Core-core repulsion = 24412.883957 eV Total energy + Delta-G solvation = -4205.065124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.07517 -42.11651 -40.64665 -39.22646 -37.88387 -37.63014 -35.68874 -34.79498 -32.89499 -32.59832 -30.62508 -29.16862 -28.03638 -26.28849 -25.43337 -24.93370 -23.76059 -21.90975 -20.67330 -20.13774 -18.90859 -18.66087 -18.48812 -18.00024 -17.52646 -17.15070 -16.88360 -16.72372 -16.43871 -16.01739 -15.40179 -15.11221 -15.03910 -14.91331 -14.76048 -14.67170 -14.44658 -14.29570 -14.24589 -13.88038 -13.65085 -13.45887 -13.34261 -13.31004 -12.96025 -12.80114 -12.74831 -12.45321 -12.36531 -12.26195 -11.90243 -11.66749 -11.48513 -11.34026 -10.63007 -10.28036 -10.07285 -9.58900 -9.22489 -8.14150 -6.18225 -0.53012 -0.05494 0.57214 1.30166 1.32043 1.36201 1.39493 1.45097 1.70821 2.24773 2.36998 2.53336 2.61537 2.69037 3.01023 3.21341 3.43402 3.67061 3.97153 4.03213 4.06528 4.25704 4.34132 4.42050 4.64996 4.66041 4.84452 4.88713 4.93832 4.97681 5.00846 5.06737 5.15274 5.18556 5.31317 5.47419 5.50148 5.59677 5.73206 5.79302 6.11601 6.16475 6.20467 6.38770 6.81914 6.87076 7.12551 7.46160 8.93542 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.004583 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.750903 B = 6108.023621 C = 8160.979834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 C -0.148 4.148 4 N -0.560 5.560 5 C 0.248 3.752 6 C -0.497 4.497 7 H 0.046 0.954 8 C 0.027 3.973 9 N -0.920 5.920 10 Si 0.930 3.070 11 H -0.263 1.263 12 H -0.290 1.290 13 H -0.287 1.287 14 C 0.506 3.494 15 O -0.557 6.557 16 C 0.488 3.512 17 O -0.470 6.470 18 N -0.639 5.639 19 C 0.134 3.866 20 C -0.053 4.053 21 C -0.109 4.109 22 C 0.129 3.871 23 F -0.134 7.134 24 C -0.061 4.061 25 C 0.268 3.732 26 N -0.453 5.453 27 C -0.064 4.064 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.041 0.959 37 H 0.259 0.741 38 H 0.435 0.565 39 H 0.194 0.806 40 H 0.197 0.803 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -14.751 -10.891 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 C -0.206 4.206 4 N -0.291 5.291 5 C 0.128 3.872 6 C -0.536 4.536 7 H 0.064 0.936 8 C -0.172 4.172 9 N -0.560 5.560 10 Si 0.758 3.242 11 H -0.187 1.187 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.288 3.712 15 O -0.439 6.439 16 C 0.270 3.730 17 O -0.340 6.340 18 N -0.290 5.290 19 C 0.039 3.961 20 C -0.074 4.074 21 C -0.128 4.128 22 C 0.107 3.893 23 F -0.113 7.113 24 C -0.066 4.066 25 C -0.047 4.047 26 N -0.129 5.129 27 C -0.088 4.088 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.276 0.724 39 H 0.211 0.789 40 H 0.214 0.786 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.066 -13.635 -9.017 17.114 hybrid contribution 0.692 0.976 0.776 1.426 sum 5.757 -12.659 -8.240 16.165 Atomic orbital electron populations 1.22081 0.93344 1.02355 1.03213 1.21327 0.95520 0.93530 0.87271 1.22032 1.00516 0.95304 1.02779 1.48363 1.41951 1.28641 1.10105 1.19396 0.94763 0.95732 0.77289 1.21277 1.05044 1.26246 1.00990 0.93581 1.25329 0.96609 0.98016 0.97281 1.69973 1.27503 1.45617 1.12941 0.86045 0.79995 0.80278 0.77916 1.18734 1.21596 1.21304 1.19846 0.80841 0.81869 0.88603 1.90640 1.62433 1.63736 1.27064 1.20494 0.80906 0.81414 0.90229 1.91024 1.57090 1.58191 1.27726 1.42988 1.44246 1.32027 1.09719 1.17683 0.99232 0.92415 0.86766 1.21478 0.95417 0.89734 1.00743 1.21296 0.99827 1.02835 0.88798 1.17791 0.98975 0.87505 0.85052 1.91532 1.86088 1.81238 1.52416 1.15841 1.10338 0.91614 0.88795 1.25847 0.92792 0.93106 0.92925 1.81196 1.10416 1.08936 1.12341 1.21105 0.95321 1.00948 0.91387 0.93199 0.88641 0.92544 0.88201 0.94010 0.89164 0.93092 0.95557 0.94088 0.93197 0.72372 0.78928 0.78630 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.10 71.98 0.66 -3.56 16 2 C 0.13 4.03 3.25 44.99 0.15 4.18 16 3 C -0.15 -4.66 8.91 71.98 0.64 -4.02 16 4 N -0.56 -21.93 2.37 -803.86 -1.91 -23.84 16 5 C 0.25 11.80 4.11 85.63 0.35 12.15 16 6 C -0.50 -26.00 6.82 25.60 0.17 -25.82 16 7 H 0.05 2.44 7.81 -2.91 -0.02 2.41 16 8 C 0.03 1.48 5.46 84.66 0.46 1.95 16 9 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 10 Si 0.93 45.30 29.54 68.60 2.03 47.32 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 14 C 0.51 18.71 7.67 87.23 0.67 19.38 16 15 O -0.56 -19.67 15.82 -3.29 -0.05 -19.72 16 16 C 0.49 17.36 7.56 87.23 0.66 18.02 16 17 O -0.47 -20.80 9.57 -3.34 -0.03 -20.83 16 18 N -0.64 -15.78 5.32 -304.91 -1.62 -17.40 16 19 C 0.13 2.99 6.29 38.14 0.24 3.23 16 20 C -0.05 -0.63 9.95 22.45 0.22 -0.41 16 21 C -0.11 -1.25 10.00 22.26 0.22 -1.03 16 22 C 0.13 2.63 7.28 22.69 0.17 2.79 16 23 F -0.13 -2.97 16.80 44.97 0.76 -2.22 16 24 C -0.06 -1.69 5.74 -21.31 -0.12 -1.82 16 25 C 0.27 9.34 14.97 88.33 1.32 10.67 16 26 N -0.45 -17.97 18.54 19.00 0.35 -17.61 16 27 C -0.06 -1.92 8.40 22.67 0.19 -1.73 16 28 H 0.05 1.59 6.51 -2.39 -0.02 1.57 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.10 3.03 6.91 -2.39 -0.02 3.02 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.88 7.27 -2.39 -0.02 1.86 16 35 H 0.03 1.31 6.21 -2.38 -0.01 1.30 16 36 H 0.04 2.17 5.84 -2.39 -0.01 2.16 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.44 7.99 8.30 -92.71 -0.77 7.22 16 39 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.12 4.78 6.23 -2.91 -0.02 4.77 16 Total: -1.00 -71.86 360.16 6.14 -65.72 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.34 Total: 8.10 kcal Atomic # 6 Polarization: 27.98 SS G_CDS: 6.00 Total: 33.98 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -2.89 Total: -112.35 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.08 Total: -40.55 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.76 Total: -2.22 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.86 6.14 -65.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.926 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds