Wall clock time and date at job start Tue Mar 31 2020 17:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46903 * 2 1 4 4 N 1.46497 * 109.47252 * 120.00364 * 2 1 3 5 5 C 1.46501 * 119.99838 * 327.03913 * 4 2 1 6 6 C 1.50701 * 109.46789 * 270.00018 * 5 4 2 7 7 H 1.07988 * 120.00608 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99294 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00706 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99758 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47262 * 59.99817 * 10 8 6 12 12 H 1.48495 * 109.47408 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47011 * 300.00294 * 10 8 6 14 14 C 1.34779 * 120.00129 * 147.03951 * 4 2 1 15 15 O 1.21357 * 119.99881 * 179.10441 * 14 4 2 16 16 C 1.49344 * 119.99924 * 359.38411 * 14 4 2 17 17 O 1.21378 * 120.00098 * 8.76568 * 16 14 4 18 18 N 1.34770 * 120.00193 * 188.76840 * 16 14 4 19 19 C 1.39453 * 120.00477 * 185.53762 * 18 16 14 20 20 C 1.39095 * 119.93157 * 18.42124 * 19 18 16 21 21 C 1.37711 * 120.10388 * 179.77037 * 20 19 18 22 22 C 1.39782 * 119.96457 * 0.51206 * 21 20 19 23 23 C 1.43192 * 120.06368 * 179.72560 * 22 21 20 24 24 N 9.56605 * 139.25501 * 248.18721 * 2 1 3 25 25 C 1.39764 * 119.86559 * 359.74371 * 22 21 20 26 26 C 1.37892 * 119.90170 * 0.02562 * 25 22 21 27 27 F 1.35098 * 119.98881 * 179.97438 * 26 25 22 28 28 H 1.08992 * 109.47406 * 299.54766 * 1 2 3 29 29 H 1.09001 * 109.46917 * 59.55063 * 1 2 3 30 30 H 1.09006 * 109.46718 * 179.54809 * 1 2 3 31 31 H 1.09001 * 109.47098 * 240.00599 * 2 1 3 32 32 H 1.09003 * 109.47365 * 181.25923 * 3 2 1 33 33 H 1.09002 * 109.47441 * 301.25604 * 3 2 1 34 34 H 1.09003 * 109.47196 * 61.26172 * 3 2 1 35 35 H 1.09000 * 109.47244 * 29.99909 * 5 4 2 36 36 H 1.08999 * 109.46944 * 150.00116 * 5 4 2 37 37 H 0.96995 * 119.99990 * 180.02562 * 9 8 6 38 38 H 0.97006 * 120.00011 * 5.53035 * 18 16 14 39 39 H 1.08000 * 119.95403 * 0.03116 * 20 19 18 40 40 H 1.07997 * 120.01943 * 180.26204 * 21 20 19 41 41 H 1.08005 * 120.05029 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.2589 -0.6157 2.4466 6 6 1.7274 0.5713 3.2483 7 1 2.5119 1.2065 2.8646 8 6 1.1542 0.8463 4.4718 9 7 0.1990 0.0725 4.9394 10 14 1.7342 2.3180 5.4653 11 1 1.5192 3.5605 4.6810 12 1 0.9645 2.3940 6.7330 13 1 3.1798 2.1698 5.7715 14 6 3.1664 -1.3951 1.1461 15 8 3.5793 -1.9537 2.1411 16 6 3.9334 -1.4829 -0.1323 17 8 3.6138 -0.7956 -1.0803 18 7 4.9805 -2.3253 -0.2334 19 6 5.7674 -2.3247 -1.3847 20 6 5.7326 -1.2351 -2.2486 21 6 6.5118 -1.2287 -3.3841 22 6 7.3310 -2.3234 -3.6748 23 6 8.1376 -2.3215 -4.8580 24 7 8.7775 -2.3200 -5.7967 25 6 7.3608 -3.4198 -2.8087 26 6 6.5820 -3.4183 -1.6708 27 9 6.6091 -4.4775 -0.8326 28 1 -0.3634 0.5067 0.8939 29 1 -0.3633 0.5208 -0.8859 30 1 -0.3633 -1.0277 -0.0081 31 1 1.8934 -0.5137 -0.8900 32 1 3.1298 1.4427 -0.0226 33 1 1.6584 1.9628 -0.8785 34 1 1.6952 1.9498 0.9011 35 1 0.1981 -0.5062 2.2214 36 1 1.4159 -1.5278 3.0223 37 1 -0.2044 0.2662 5.8000 38 1 5.1869 -2.9321 0.4947 39 1 5.0968 -0.3908 -2.0264 40 1 6.4869 -0.3801 -4.0516 41 1 7.9930 -4.2670 -3.0302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527353659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:25 Heat of formation + Delta-G solvation = -32.428016 kcal Electronic energy + Delta-G solvation = -28120.182040 eV Core-core repulsion = 23916.173295 eV Total energy + Delta-G solvation = -4204.008745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.29482 -41.27478 -39.59285 -38.26110 -36.88989 -36.42409 -34.96627 -32.89465 -31.27698 -31.00429 -30.53731 -28.07256 -26.69357 -25.58095 -23.87485 -23.31718 -22.36403 -21.04252 -19.90735 -19.50910 -18.13574 -17.43008 -16.79132 -16.64060 -16.44868 -16.20408 -16.03787 -15.47976 -15.17238 -14.66220 -14.41184 -14.35011 -14.24842 -13.89363 -13.81576 -13.59735 -13.44496 -12.96814 -12.73163 -12.57968 -12.46951 -12.39714 -12.12364 -11.93534 -11.67958 -11.23156 -11.16019 -11.02911 -10.96995 -10.78318 -10.54283 -10.27704 -10.12331 -9.68610 -9.41012 -8.85529 -8.50855 -8.50247 -7.91756 -6.13921 -4.18503 0.13101 0.70058 1.56128 2.28262 2.29885 2.51591 3.26655 3.31550 3.31851 3.34740 3.36734 3.51856 3.72972 3.78063 4.25798 4.36060 4.47807 4.50362 4.71412 4.98587 5.21039 5.25259 5.38775 5.49786 5.57240 5.61879 5.74552 5.81821 5.92171 6.08536 6.18016 6.31248 6.37147 6.39026 6.65291 6.71560 6.83865 6.93039 7.10547 7.21873 7.29306 7.57179 7.81430 8.07272 8.10053 8.48735 8.84795 9.46018 10.94264 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002801 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.257713 B = 9993.830301 C =10402.166947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 C -0.152 4.152 4 N -0.548 5.548 5 C 0.236 3.764 6 C -0.526 4.526 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.494 3.506 15 O -0.519 6.519 16 C 0.512 3.488 17 O -0.486 6.486 18 N -0.643 5.643 19 C 0.161 3.839 20 C -0.123 4.123 21 C -0.050 4.050 22 C -0.033 4.033 23 C 0.260 3.740 24 N -0.417 5.417 25 C -0.080 4.080 26 C 0.063 3.937 27 F -0.128 7.128 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.430 0.570 39 H 0.179 0.821 40 H 0.145 0.855 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 -4.042 -15.027 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 C -0.210 4.210 4 N -0.279 5.279 5 C 0.118 3.882 6 C -0.565 4.565 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.274 3.726 15 O -0.397 6.397 16 C 0.297 3.703 17 O -0.360 6.360 18 N -0.287 5.287 19 C 0.062 3.938 20 C -0.143 4.143 21 C -0.071 4.071 22 C -0.037 4.037 23 C -0.055 4.055 24 N -0.092 5.092 25 C -0.102 4.102 26 C 0.041 3.959 27 F -0.107 7.107 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.269 0.731 39 H 0.196 0.804 40 H 0.162 0.838 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.107 -3.868 -16.315 19.080 hybrid contribution 0.201 0.276 1.561 1.598 sum 9.308 -3.593 -14.754 17.811 Atomic orbital electron populations 1.22152 0.94918 1.02002 1.02853 1.21761 0.94588 0.94316 0.88471 1.22091 1.00776 0.95954 1.02198 1.48386 1.20655 1.44969 1.13897 1.19609 0.91490 0.98696 0.78392 1.21318 1.20669 1.11183 1.03317 0.92186 1.24911 0.94922 0.96873 0.97203 1.69909 1.25342 1.38046 1.19858 0.86564 0.78952 0.82627 0.79341 1.20173 1.21167 1.20160 1.19332 0.83392 0.82795 0.87060 1.90780 1.67002 1.46639 1.35233 1.21243 0.80157 0.79100 0.89826 1.90504 1.64534 1.41765 1.39241 1.43257 1.27738 1.39742 1.17999 1.18160 0.92641 0.93732 0.89263 1.21741 1.00565 0.98430 0.93536 1.21203 0.92554 0.96772 0.96560 1.15681 0.99804 0.96891 0.91352 1.25482 0.93287 0.93919 0.92821 1.81283 1.09651 1.07358 1.10891 1.20854 0.98552 0.98761 0.91983 1.17004 1.02630 0.84697 0.91591 1.91544 1.95615 1.53820 1.69728 0.90506 0.92132 0.92808 0.87069 0.93245 0.92746 0.90981 0.93195 0.93645 0.92540 0.73113 0.80383 0.83765 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.32 37.16 0.31 -2.13 16 2 C 0.11 1.81 2.62 -67.93 -0.18 1.63 16 3 C -0.15 -2.40 9.15 37.16 0.34 -2.06 16 4 N -0.55 -10.77 2.39 -168.01 -0.40 -11.17 16 5 C 0.24 5.65 4.84 -5.19 -0.03 5.63 16 6 C -0.53 -13.80 8.68 -34.44 -0.30 -14.10 16 7 H 0.06 1.58 7.41 -52.49 -0.39 1.19 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 10 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.49 9.33 7.73 -11.63 -0.09 9.24 16 15 O -0.52 -11.34 16.11 5.49 0.09 -11.25 16 16 C 0.51 7.45 7.57 -11.64 -0.09 7.36 16 17 O -0.49 -6.77 9.18 5.47 0.05 -6.72 16 18 N -0.64 -7.75 5.31 -10.23 -0.05 -7.81 16 19 C 0.16 1.64 6.52 -83.67 -0.55 1.10 16 20 C -0.12 -1.12 8.78 -39.46 -0.35 -1.47 16 21 C -0.05 -0.36 9.74 -39.20 -0.38 -0.74 16 22 C -0.03 -0.24 5.74 -106.83 -0.61 -0.86 16 23 C 0.26 2.33 15.32 -22.47 -0.34 1.98 16 24 N -0.42 -4.71 18.54 41.84 0.78 -3.93 16 25 C -0.08 -0.58 9.72 -39.14 -0.38 -0.96 16 26 C 0.06 0.56 7.30 -39.30 -0.29 0.28 16 27 F -0.13 -1.26 16.72 2.25 0.04 -1.22 16 28 H 0.08 1.34 6.57 -51.93 -0.34 1.00 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 1.67 4.97 -52.59 -0.26 1.41 16 32 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.31 7.06 -51.93 -0.37 0.94 16 35 H 0.05 1.20 5.63 -51.93 -0.29 0.91 16 36 H 0.05 1.23 7.43 -51.93 -0.39 0.84 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.43 5.00 7.86 -40.82 -0.32 4.68 16 39 H 0.18 1.82 5.31 -52.49 -0.28 1.54 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -29.77 358.57 -5.69 -35.46 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.28 Total: 3.21 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -3.03 Total: 6.52 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.06 Total: -47.24 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.14 Total: -17.97 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.77 -5.69 -35.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527353659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.030 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds