Wall clock time and date at job start Tue Mar 31 2020 17:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46903 * 2 1 4 4 N 1.46497 * 109.47252 * 120.00364 * 2 1 3 5 5 C 1.46501 * 119.99838 * 327.03913 * 4 2 1 6 6 C 1.50701 * 109.46789 * 270.00018 * 5 4 2 7 7 H 1.07988 * 120.00608 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99294 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00706 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99758 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47262 * 59.99817 * 10 8 6 12 12 H 1.48495 * 109.47408 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47011 * 300.00294 * 10 8 6 14 14 C 1.34779 * 120.00129 * 147.03951 * 4 2 1 15 15 O 1.21357 * 119.99881 * 179.10441 * 14 4 2 16 16 C 1.49344 * 119.99924 * 359.38411 * 14 4 2 17 17 O 1.21378 * 120.00098 * 8.76568 * 16 14 4 18 18 N 1.34770 * 120.00193 * 188.76840 * 16 14 4 19 19 C 1.39453 * 120.00477 * 185.53762 * 18 16 14 20 20 C 1.39095 * 119.93157 * 18.42124 * 19 18 16 21 21 C 1.37711 * 120.10388 * 179.77037 * 20 19 18 22 22 C 1.39782 * 119.96457 * 0.51206 * 21 20 19 23 23 C 1.43192 * 120.06368 * 179.72560 * 22 21 20 24 24 N 9.56605 * 139.25501 * 248.18721 * 2 1 3 25 25 C 1.39764 * 119.86559 * 359.74371 * 22 21 20 26 26 C 1.37892 * 119.90170 * 0.02562 * 25 22 21 27 27 F 1.35098 * 119.98881 * 179.97438 * 26 25 22 28 28 H 1.08992 * 109.47406 * 299.54766 * 1 2 3 29 29 H 1.09001 * 109.46917 * 59.55063 * 1 2 3 30 30 H 1.09006 * 109.46718 * 179.54809 * 1 2 3 31 31 H 1.09001 * 109.47098 * 240.00599 * 2 1 3 32 32 H 1.09003 * 109.47365 * 181.25923 * 3 2 1 33 33 H 1.09002 * 109.47441 * 301.25604 * 3 2 1 34 34 H 1.09003 * 109.47196 * 61.26172 * 3 2 1 35 35 H 1.09000 * 109.47244 * 29.99909 * 5 4 2 36 36 H 1.08999 * 109.46944 * 150.00116 * 5 4 2 37 37 H 0.96995 * 119.99990 * 180.02562 * 9 8 6 38 38 H 0.97006 * 120.00011 * 5.53035 * 18 16 14 39 39 H 1.08000 * 119.95403 * 0.03116 * 20 19 18 40 40 H 1.07997 * 120.01943 * 180.26204 * 21 20 19 41 41 H 1.08005 * 120.05029 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.2589 -0.6157 2.4466 6 6 1.7274 0.5713 3.2483 7 1 2.5119 1.2065 2.8646 8 6 1.1542 0.8463 4.4718 9 7 0.1990 0.0725 4.9394 10 14 1.7342 2.3180 5.4653 11 1 1.5192 3.5605 4.6810 12 1 0.9645 2.3940 6.7330 13 1 3.1798 2.1698 5.7715 14 6 3.1664 -1.3951 1.1461 15 8 3.5793 -1.9537 2.1411 16 6 3.9334 -1.4829 -0.1323 17 8 3.6138 -0.7956 -1.0803 18 7 4.9805 -2.3253 -0.2334 19 6 5.7674 -2.3247 -1.3847 20 6 5.7326 -1.2351 -2.2486 21 6 6.5118 -1.2287 -3.3841 22 6 7.3310 -2.3234 -3.6748 23 6 8.1376 -2.3215 -4.8580 24 7 8.7775 -2.3200 -5.7967 25 6 7.3608 -3.4198 -2.8087 26 6 6.5820 -3.4183 -1.6708 27 9 6.6091 -4.4775 -0.8326 28 1 -0.3634 0.5067 0.8939 29 1 -0.3633 0.5208 -0.8859 30 1 -0.3633 -1.0277 -0.0081 31 1 1.8934 -0.5137 -0.8900 32 1 3.1298 1.4427 -0.0226 33 1 1.6584 1.9628 -0.8785 34 1 1.6952 1.9498 0.9011 35 1 0.1981 -0.5062 2.2214 36 1 1.4159 -1.5278 3.0223 37 1 -0.2044 0.2662 5.8000 38 1 5.1869 -2.9321 0.4947 39 1 5.0968 -0.3908 -2.0264 40 1 6.4869 -0.3801 -4.0516 41 1 7.9930 -4.2670 -3.0302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527353659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:24 Heat of formation + Delta-G solvation = -49.878395 kcal Electronic energy + Delta-G solvation = -28120.938745 eV Core-core repulsion = 23916.173295 eV Total energy + Delta-G solvation = -4204.765450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.02777 -42.40560 -40.63330 -39.42639 -38.09621 -37.49060 -35.98426 -34.87002 -32.52194 -31.96129 -31.35158 -29.83220 -28.04050 -26.78889 -25.18212 -24.15262 -23.73442 -22.33015 -21.00572 -20.35692 -19.19995 -18.68996 -18.50478 -17.81459 -17.47171 -17.17468 -16.94774 -16.71712 -16.56902 -16.14151 -15.49449 -15.38979 -15.13468 -14.99330 -14.93442 -14.69493 -14.47222 -14.26981 -13.87395 -13.72874 -13.58804 -13.45713 -13.33597 -13.25047 -12.99380 -12.82164 -12.71267 -12.38225 -12.26147 -12.12599 -12.08705 -11.88158 -11.71113 -11.43879 -10.58227 -10.24197 -9.99360 -9.60523 -9.30142 -8.19576 -6.31348 -0.63875 0.05729 0.37126 1.14354 1.40409 1.42688 1.50055 1.56711 1.73221 2.11447 2.37231 2.48260 2.65363 2.70297 3.07480 3.09901 3.16792 3.64525 3.89490 3.99746 4.06210 4.21045 4.32140 4.55614 4.59713 4.74994 4.85265 4.90981 4.96482 4.98585 5.05255 5.08979 5.15157 5.17495 5.21822 5.40229 5.53873 5.58935 5.65363 5.72928 5.82320 6.06983 6.35731 6.40669 6.59357 6.74297 7.00080 7.37538 8.87740 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002801 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.257713 B = 9993.830301 C =10402.166947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 C -0.145 4.145 4 N -0.556 5.556 5 C 0.251 3.749 6 C -0.533 4.533 7 H 0.055 0.945 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.485 3.515 15 O -0.559 6.559 16 C 0.526 3.474 17 O -0.478 6.478 18 N -0.635 5.635 19 C 0.143 3.857 20 C -0.125 4.125 21 C -0.033 4.033 22 C -0.024 4.024 23 C 0.286 3.714 24 N -0.456 5.456 25 C -0.065 4.065 26 C 0.061 3.939 27 F -0.135 7.135 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.132 0.868 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.005 0.995 37 H 0.266 0.734 38 H 0.430 0.570 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -3.229 -17.311 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 C -0.203 4.203 4 N -0.286 5.286 5 C 0.131 3.869 6 C -0.571 4.571 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.784 3.216 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.203 1.203 14 C 0.267 3.733 15 O -0.439 6.439 16 C 0.309 3.691 17 O -0.353 6.353 18 N -0.279 5.279 19 C 0.045 3.955 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.029 4.029 23 C -0.029 4.029 24 N -0.131 5.131 25 C -0.087 4.087 26 C 0.039 3.961 27 F -0.113 7.113 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.269 0.731 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.311 -3.052 -18.657 21.535 hybrid contribution -0.099 -0.036 2.182 2.184 sum 10.212 -3.088 -16.476 19.628 Atomic orbital electron populations 1.22115 0.94122 1.02172 1.03017 1.22076 0.95312 0.94534 0.87448 1.22028 1.00602 0.95485 1.02221 1.48379 1.20935 1.45734 1.13594 1.19087 0.91856 0.96038 0.79900 1.21566 1.20233 1.11573 1.03777 0.92664 1.25722 0.95073 0.99524 0.98337 1.70021 1.26502 1.39681 1.20300 0.85596 0.78141 0.79825 0.78048 1.18803 1.20663 1.20323 1.20090 0.83127 0.81575 0.88498 1.90745 1.67963 1.47901 1.37274 1.20101 0.80732 0.80246 0.87994 1.90498 1.64692 1.41909 1.38209 1.43039 1.27140 1.38811 1.18896 1.18333 0.93311 0.94950 0.88904 1.21663 1.01054 0.97828 0.93978 1.21384 0.91002 0.97205 0.95783 1.15648 0.99453 0.97062 0.90736 1.25468 0.92410 0.92698 0.92336 1.81329 1.10972 1.08665 1.12168 1.21033 0.97665 0.99223 0.90747 1.17041 1.02792 0.84238 0.92022 1.91536 1.95676 1.54072 1.70056 0.93429 0.88677 0.92750 0.85109 0.93510 0.89457 0.93932 0.93568 0.97648 0.92475 0.73064 0.81131 0.81283 0.81060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 8.32 71.98 0.60 -4.01 16 2 C 0.11 3.40 2.62 44.99 0.12 3.52 16 3 C -0.15 -4.40 9.15 71.98 0.66 -3.74 16 4 N -0.56 -22.39 2.39 -803.83 -1.92 -24.31 16 5 C 0.25 12.61 4.84 85.63 0.41 13.02 16 6 C -0.53 -28.84 8.68 25.60 0.22 -28.61 16 7 H 0.06 2.97 7.41 -2.92 -0.02 2.95 16 8 C 0.01 0.70 5.46 84.65 0.46 1.16 16 9 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 10 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.49 18.78 7.73 87.24 0.67 19.45 16 15 O -0.56 -25.54 16.11 -3.27 -0.05 -25.59 16 16 C 0.53 14.99 7.57 87.24 0.66 15.65 16 17 O -0.48 -12.48 9.18 -3.33 -0.03 -12.51 16 18 N -0.64 -14.84 5.31 -304.63 -1.62 -16.46 16 19 C 0.14 2.64 6.52 38.40 0.25 2.89 16 20 C -0.13 -1.97 8.78 22.35 0.20 -1.77 16 21 C -0.03 -0.36 9.74 22.52 0.22 -0.14 16 22 C -0.02 -0.28 5.74 -21.29 -0.12 -0.40 16 23 C 0.29 4.27 15.32 88.33 1.35 5.62 16 24 N -0.46 -9.33 18.54 19.00 0.35 -8.98 16 25 C -0.07 -0.74 9.72 22.56 0.22 -0.52 16 26 C 0.06 0.96 7.30 22.45 0.16 1.12 16 27 F -0.13 -2.44 16.72 44.97 0.75 -1.68 16 28 H 0.05 1.68 6.57 -2.39 -0.02 1.66 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.13 3.67 4.97 -13.16 -0.07 3.61 16 32 H 0.05 1.42 7.60 -2.39 -0.02 1.40 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.53 7.06 -2.39 -0.02 1.52 16 35 H 0.05 2.33 5.63 -2.39 -0.01 2.32 16 36 H 0.01 0.31 7.43 -2.39 -0.02 0.30 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.43 10.01 7.86 -92.70 -0.73 9.29 16 39 H 0.17 3.05 5.31 -3.19 -0.02 3.03 16 40 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -66.69 358.57 6.22 -60.48 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.33 Total: 13.70 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 6.09 Total: 23.25 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.90 Total: -102.92 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.08 Total: -38.10 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.75 Total: -1.68 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.69 6.22 -60.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527353659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.597 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds