Wall clock time and date at job start Tue Mar 31 2020 17:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47182 * 2 1 4 4 N 1.46501 * 109.46866 * 119.99966 * 2 1 3 5 5 C 1.35311 * 125.86807 * 275.29433 * 4 2 1 6 6 C 1.35354 * 106.17364 * 180.19027 * 5 4 2 7 7 C 1.50696 * 126.75381 * 179.85133 * 6 5 4 8 8 S 1.81396 * 109.47460 * 269.71050 * 7 6 5 9 9 O 1.42098 * 109.46656 * 296.38821 * 8 7 6 10 10 C 1.81390 * 103.00258 * 179.97438 * 8 7 6 11 11 C 1.50700 * 109.47208 * 179.97438 * 10 8 7 12 12 C 1.38631 * 119.75477 * 269.73030 * 11 10 8 13 13 C 1.37623 * 120.25353 * 179.71997 * 12 11 10 14 14 C 1.40715 * 119.74166 * 0.57174 * 13 12 11 15 15 C 1.41392 * 120.24465 * 179.68502 * 14 13 12 16 16 H 1.08002 * 119.99743 * 155.31169 * 15 14 13 17 17 C 1.39942 * 119.99862 * 335.30592 * 15 14 13 18 18 N 1.30820 * 119.99976 * 342.23793 * 17 15 14 19 19 Si 1.86802 * 120.00033 * 162.23417 * 17 15 14 20 20 H 1.48503 * 109.46827 * 94.66600 * 19 17 15 21 21 H 1.48500 * 109.47345 * 214.66528 * 19 17 15 22 22 H 1.48499 * 109.47225 * 334.66718 * 19 17 15 23 23 C 1.40722 * 119.51314 * 359.70284 * 14 13 12 24 24 C 1.37623 * 119.73961 * 359.97438 * 23 14 13 25 25 N 1.33772 * 106.49629 * 359.58495 * 6 5 4 26 26 N 1.28639 * 108.88636 * 0.27039 * 25 6 5 27 27 H 1.09000 * 109.47348 * 300.00333 * 1 2 3 28 28 H 1.09004 * 109.47360 * 59.99768 * 1 2 3 29 29 H 1.09004 * 109.47740 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46850 * 239.99567 * 2 1 3 31 31 H 1.09000 * 109.46981 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47484 * 299.99928 * 3 2 1 33 33 H 1.08997 * 109.47581 * 60.00015 * 3 2 1 34 34 H 1.07993 * 126.91497 * 0.03545 * 5 4 2 35 35 H 1.09004 * 109.47411 * 149.70403 * 7 6 5 36 36 H 1.09007 * 109.47220 * 29.70915 * 7 6 5 37 37 H 1.08999 * 109.47685 * 299.99549 * 10 8 7 38 38 H 1.09002 * 109.47206 * 60.00175 * 10 8 7 39 39 H 1.08009 * 119.87462 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.13061 * 180.28064 * 13 12 11 41 41 H 0.97006 * 119.99778 * 180.02562 * 18 17 15 42 42 H 1.07992 * 120.13029 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.86886 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1871 -0.1357 2.4187 6 6 2.6556 -1.1217 3.2189 7 6 3.0063 -1.0071 4.6800 8 16 4.7528 -0.5468 4.8484 9 8 5.5686 -1.5821 4.3176 10 6 4.9801 -0.4585 6.6459 11 6 6.4060 -0.0807 6.9540 12 6 7.3603 -1.0727 7.1189 13 6 8.6667 -0.7390 7.3948 14 6 9.0297 0.6146 7.5213 15 6 10.3674 0.9691 7.8111 16 1 10.7422 1.9411 7.5264 17 6 11.2056 0.0605 8.4671 18 7 10.6917 -0.9529 9.1154 19 14 13.0582 0.2948 8.4170 20 1 13.4959 1.0382 9.6258 21 1 13.7242 -1.0320 8.3838 22 1 13.4271 1.0645 7.2019 23 6 8.0515 1.6129 7.3575 24 6 6.7526 1.2561 7.0754 25 7 2.7404 -2.2194 2.4591 26 7 2.3558 -1.9308 1.2660 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.9903 0.8886 2.6988 35 1 2.8338 -1.9647 5.1713 36 1 2.3828 -0.2430 5.1445 37 1 4.3073 0.2920 7.0608 38 1 4.7582 -1.4297 7.0883 39 1 7.0784 -2.1112 7.0264 40 1 9.4094 -1.5133 7.5184 41 1 11.2727 -1.5825 9.5704 42 1 8.3190 2.6548 7.4529 43 1 6.0001 2.0205 6.9497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559176228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:02 Heat of formation + Delta-G solvation = 69.656198 kcal Electronic energy + Delta-G solvation = -24756.514396 eV Core-core repulsion = 21123.145531 eV Total energy + Delta-G solvation = -3633.368865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39213 -37.61919 -36.88188 -35.17991 -33.98900 -33.00909 -31.43537 -31.23574 -29.30904 -28.29838 -27.78460 -27.33832 -24.14543 -23.95241 -21.67934 -21.01891 -20.92396 -20.04256 -17.61713 -17.32228 -17.01271 -16.53576 -15.42017 -15.34167 -15.09051 -14.89428 -14.77101 -14.31052 -14.06473 -13.75510 -13.63922 -13.49903 -13.33804 -12.94858 -12.87429 -12.55544 -12.20272 -12.07936 -11.96119 -11.89898 -11.65311 -11.61340 -11.46853 -11.09792 -11.03410 -10.81144 -10.65339 -10.57034 -10.33486 -9.98667 -9.68744 -9.41582 -9.23570 -9.00169 -7.94465 -7.46791 -7.20297 -6.78689 -4.36288 1.37673 1.69904 2.11093 2.59310 2.81968 3.02515 3.05818 3.07917 3.12112 3.27974 3.87733 3.91448 4.16632 4.20868 4.25100 4.40322 4.60646 4.68772 4.82702 4.87477 4.99637 5.07146 5.11992 5.30635 5.41193 5.49727 5.54118 5.58456 5.64240 5.73237 5.78248 6.08696 6.24960 6.34650 6.41083 6.45249 6.94388 7.04089 7.24331 7.32312 7.58572 7.80458 8.02992 8.06977 8.25932 8.45210 8.61456 8.85937 8.94294 10.15027 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.002144 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.561672 B =13056.629932 C =13257.724097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.167 4.167 4 N -0.288 5.288 5 C -0.049 4.049 6 C 0.008 3.992 7 C -0.381 4.381 8 S 1.232 4.768 9 O -0.825 6.825 10 C -0.361 4.361 11 C -0.207 4.207 12 C -0.085 4.085 13 C -0.163 4.163 14 C 0.113 3.887 15 C -0.458 4.458 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.789 5.789 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.227 4.227 24 C -0.082 4.082 25 N -0.260 5.260 26 N -0.087 5.087 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.194 0.806 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 8.495 -13.560 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 C -0.225 4.225 4 N -0.082 5.082 5 C -0.200 4.200 6 C -0.131 4.131 7 C -0.515 4.515 8 S 1.431 4.569 9 O -0.820 6.820 10 C -0.498 4.498 11 C -0.210 4.210 12 C -0.105 4.105 13 C -0.183 4.183 14 C 0.110 3.890 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.246 4.246 24 C -0.101 4.101 25 N -0.127 5.127 26 N -0.065 5.065 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.211 0.789 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.521 7.062 -14.976 24.843 hybrid contribution 0.172 -0.991 1.704 1.978 sum -18.349 6.071 -13.273 23.446 Atomic orbital electron populations 1.22227 0.92469 1.03772 1.03812 1.21713 0.95798 0.93915 0.85085 1.22237 1.02989 0.93013 1.04310 1.47574 1.42426 1.08438 1.09802 1.23235 1.09321 1.02123 0.85369 1.21016 1.05143 0.90452 0.96488 1.26274 1.23761 1.09204 0.92288 1.70837 0.81772 1.14307 0.89939 1.93163 1.57912 1.60007 1.70904 1.26187 1.01249 1.05547 1.16860 1.18255 0.91335 0.93803 1.17649 1.20577 0.94048 0.96476 0.99364 1.21305 0.94798 0.97105 1.05084 1.17672 0.92609 0.91376 0.87386 1.19632 0.95302 1.01122 1.32660 0.90215 1.25960 1.01508 0.94060 0.92887 1.69828 1.37872 1.11588 1.22088 0.86301 0.81931 0.78802 0.79728 1.19537 1.20012 1.18322 1.20957 0.92914 0.97823 1.12942 1.20380 0.95833 0.93742 1.00172 1.75150 1.16052 1.24754 0.96769 1.78313 1.16027 0.96236 1.15966 0.91371 0.89690 0.91366 0.86859 0.90812 0.89413 0.90849 0.78887 0.88249 0.85385 0.87303 0.90457 0.89691 0.86440 0.90760 0.88642 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.52 37.16 0.35 -0.32 16 2 C 0.14 0.78 3.85 -67.94 -0.26 0.51 16 3 C -0.17 -0.56 8.84 37.15 0.33 -0.23 16 4 N -0.29 -2.97 3.25 -54.77 -0.18 -3.15 16 5 C -0.05 -0.47 10.62 -17.05 -0.18 -0.65 16 6 C 0.01 0.11 6.51 -82.78 -0.54 -0.43 16 7 C -0.38 -4.55 6.49 36.00 0.23 -4.32 16 8 S 1.23 18.40 13.12 -107.50 -1.41 16.99 16 9 O -0.82 -18.58 18.14 -35.23 -0.64 -19.21 16 10 C -0.36 -5.83 6.04 36.01 0.22 -5.61 16 11 C -0.21 -4.42 5.16 -104.33 -0.54 -4.96 16 12 C -0.09 -2.12 9.67 -39.66 -0.38 -2.50 16 13 C -0.16 -4.41 8.70 -38.87 -0.34 -4.75 16 14 C 0.11 3.01 5.57 -106.82 -0.60 2.41 16 15 C -0.46 -12.09 9.05 -37.74 -0.34 -12.43 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 18 N -0.79 -20.67 10.97 55.55 0.61 -20.06 16 19 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 24 C -0.08 -1.69 9.67 -39.66 -0.38 -2.07 16 25 N -0.26 -4.49 12.41 33.29 0.41 -4.08 16 26 N -0.09 -1.29 13.17 60.35 0.79 -0.50 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.17 7.18 -51.93 -0.37 -0.20 16 34 H 0.19 0.89 7.31 -52.49 -0.38 0.51 16 35 H 0.10 1.34 8.14 -51.92 -0.42 0.91 16 36 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 37 H 0.11 1.31 8.08 -51.92 -0.42 0.90 16 38 H 0.08 1.30 8.08 -51.92 -0.42 0.88 16 39 H 0.08 2.08 8.06 -52.48 -0.42 1.65 16 40 H 0.12 3.30 6.18 -52.49 -0.32 2.98 16 41 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 42 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -38.12 378.91 -8.75 -46.87 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.12 Total: 3.04 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: -2.90 Total: -39.30 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 1.64 Total: -27.79 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.64 Total: -19.21 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: 18.40 SS G_CDS: -1.41 Total: 16.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.12 -8.75 -46.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559176228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.526 kcal (2) G-P(sol) polarization free energy of solvation -38.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds