Wall clock time and date at job start Tue Mar 31 2020 17:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47182 * 2 1 4 4 N 1.46501 * 109.46866 * 119.99966 * 2 1 3 5 5 C 1.35311 * 125.86807 * 275.29433 * 4 2 1 6 6 C 1.35354 * 106.17364 * 180.19027 * 5 4 2 7 7 C 1.50696 * 126.75381 * 179.85133 * 6 5 4 8 8 S 1.81396 * 109.47460 * 269.71050 * 7 6 5 9 9 O 1.42098 * 109.46656 * 296.38821 * 8 7 6 10 10 C 1.81390 * 103.00258 * 179.97438 * 8 7 6 11 11 C 1.50700 * 109.47208 * 179.97438 * 10 8 7 12 12 C 1.38631 * 119.75477 * 269.73030 * 11 10 8 13 13 C 1.37623 * 120.25353 * 179.71997 * 12 11 10 14 14 C 1.40715 * 119.74166 * 0.57174 * 13 12 11 15 15 C 1.41392 * 120.24465 * 179.68502 * 14 13 12 16 16 H 1.08002 * 119.99743 * 155.31169 * 15 14 13 17 17 C 1.39942 * 119.99862 * 335.30592 * 15 14 13 18 18 N 1.30820 * 119.99976 * 342.23793 * 17 15 14 19 19 Si 1.86802 * 120.00033 * 162.23417 * 17 15 14 20 20 H 1.48503 * 109.46827 * 94.66600 * 19 17 15 21 21 H 1.48500 * 109.47345 * 214.66528 * 19 17 15 22 22 H 1.48499 * 109.47225 * 334.66718 * 19 17 15 23 23 C 1.40722 * 119.51314 * 359.70284 * 14 13 12 24 24 C 1.37623 * 119.73961 * 359.97438 * 23 14 13 25 25 N 1.33772 * 106.49629 * 359.58495 * 6 5 4 26 26 N 1.28639 * 108.88636 * 0.27039 * 25 6 5 27 27 H 1.09000 * 109.47348 * 300.00333 * 1 2 3 28 28 H 1.09004 * 109.47360 * 59.99768 * 1 2 3 29 29 H 1.09004 * 109.47740 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46850 * 239.99567 * 2 1 3 31 31 H 1.09000 * 109.46981 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47484 * 299.99928 * 3 2 1 33 33 H 1.08997 * 109.47581 * 60.00015 * 3 2 1 34 34 H 1.07993 * 126.91497 * 0.03545 * 5 4 2 35 35 H 1.09004 * 109.47411 * 149.70403 * 7 6 5 36 36 H 1.09007 * 109.47220 * 29.70915 * 7 6 5 37 37 H 1.08999 * 109.47685 * 299.99549 * 10 8 7 38 38 H 1.09002 * 109.47206 * 60.00175 * 10 8 7 39 39 H 1.08009 * 119.87462 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.13061 * 180.28064 * 13 12 11 41 41 H 0.97006 * 119.99778 * 180.02562 * 18 17 15 42 42 H 1.07992 * 120.13029 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.86886 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1871 -0.1357 2.4187 6 6 2.6556 -1.1217 3.2189 7 6 3.0063 -1.0071 4.6800 8 16 4.7528 -0.5468 4.8484 9 8 5.5686 -1.5821 4.3176 10 6 4.9801 -0.4585 6.6459 11 6 6.4060 -0.0807 6.9540 12 6 7.3603 -1.0727 7.1189 13 6 8.6667 -0.7390 7.3948 14 6 9.0297 0.6146 7.5213 15 6 10.3674 0.9691 7.8111 16 1 10.7422 1.9411 7.5264 17 6 11.2056 0.0605 8.4671 18 7 10.6917 -0.9529 9.1154 19 14 13.0582 0.2948 8.4170 20 1 13.4959 1.0382 9.6258 21 1 13.7242 -1.0320 8.3838 22 1 13.4271 1.0645 7.2019 23 6 8.0515 1.6129 7.3575 24 6 6.7526 1.2561 7.0754 25 7 2.7404 -2.2194 2.4591 26 7 2.3558 -1.9308 1.2660 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.9903 0.8886 2.6988 35 1 2.8338 -1.9647 5.1713 36 1 2.3828 -0.2430 5.1445 37 1 4.3073 0.2920 7.0608 38 1 4.7582 -1.4297 7.0883 39 1 7.0784 -2.1112 7.0264 40 1 9.4094 -1.5133 7.5184 41 1 11.2727 -1.5825 9.5704 42 1 8.3190 2.6548 7.4529 43 1 6.0001 2.0205 6.9497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559176228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:01 Heat of formation + Delta-G solvation = 42.078945 kcal Electronic energy + Delta-G solvation = -24757.710235 eV Core-core repulsion = 21123.145531 eV Total energy + Delta-G solvation = -3634.564705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.27471 -39.44213 -37.45521 -36.69482 -35.81624 -33.88414 -32.96908 -32.19021 -31.17188 -29.42141 -28.81438 -28.08114 -25.72167 -24.83564 -22.89401 -22.64784 -21.84177 -21.52130 -19.21588 -18.51348 -17.98965 -17.42317 -17.20760 -16.41847 -16.20676 -15.95147 -15.76966 -15.65332 -15.43040 -15.18623 -14.86003 -14.38788 -14.29799 -14.08128 -13.81372 -13.65521 -13.44750 -13.22988 -13.11214 -13.04103 -12.80546 -12.65845 -12.55692 -12.41753 -12.39633 -12.24353 -12.11334 -11.73626 -11.61140 -11.44493 -11.25691 -11.04419 -10.92845 -10.20427 -9.39604 -9.27339 -8.90246 -8.63759 -6.31695 0.32444 0.69338 1.05478 1.15936 1.36038 1.47308 1.49478 1.52667 1.69444 1.94897 2.18963 2.74440 2.97836 3.30315 3.58015 3.76181 3.85202 3.90701 4.05748 4.11528 4.13469 4.32993 4.42625 4.48860 4.62769 4.65513 4.71187 4.74503 4.82859 4.84852 4.96505 4.98226 5.11029 5.16411 5.17957 5.20760 5.32285 5.37345 5.44795 5.70675 5.76565 5.96338 6.11514 6.20725 6.38267 6.71134 6.93235 7.04972 7.51716 8.31934 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.002144 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.561672 B =13056.629932 C =13257.724097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 C -0.163 4.163 4 N -0.278 5.278 5 C -0.016 4.016 6 C -0.030 4.030 7 C -0.361 4.361 8 S 1.282 4.718 9 O -0.915 6.915 10 C -0.366 4.366 11 C -0.195 4.195 12 C -0.112 4.112 13 C -0.197 4.197 14 C 0.076 3.924 15 C -0.496 4.496 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.831 5.831 19 Si 0.983 3.017 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.235 4.235 24 C -0.072 4.072 25 N -0.324 5.324 26 N -0.129 5.129 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.254 0.746 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.169 0.831 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.285 0.715 42 H 0.114 0.886 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.673 12.831 -14.282 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 C -0.221 4.221 4 N -0.073 5.073 5 C -0.169 4.169 6 C -0.170 4.170 7 C -0.499 4.499 8 S 1.485 4.515 9 O -0.911 6.911 10 C -0.503 4.503 11 C -0.197 4.197 12 C -0.131 4.131 13 C -0.217 4.217 14 C 0.073 3.927 15 C -0.526 4.526 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.457 5.457 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.254 4.254 24 C -0.091 4.091 25 N -0.190 5.190 26 N -0.107 5.107 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.270 0.730 35 H 0.100 0.900 36 H 0.211 0.789 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.855 11.398 -15.711 29.230 hybrid contribution 0.811 -2.293 1.763 3.004 sum -21.043 9.104 -13.948 26.838 Atomic orbital electron populations 1.22220 0.90868 1.02878 1.05670 1.22214 0.97007 0.95028 0.83355 1.22290 1.02152 0.91103 1.06580 1.48088 1.40366 1.07416 1.11394 1.24072 1.05538 1.03392 0.83932 1.21445 1.07246 0.90931 0.97372 1.26137 1.20909 1.10538 0.92284 1.69597 0.82329 1.12383 0.87192 1.93049 1.62584 1.62552 1.72868 1.26312 0.98874 1.06937 1.18222 1.18768 0.93204 0.93511 1.14263 1.20765 0.94529 0.97099 1.00729 1.21201 0.95332 0.97216 1.07952 1.18045 0.94025 0.91831 0.88796 1.19908 0.96258 1.02023 1.34406 0.89782 1.26878 1.06320 0.93476 0.91961 1.69916 1.39619 1.12787 1.23365 0.85187 0.75634 0.78759 0.80108 1.18158 1.19797 1.17878 1.21342 0.93768 0.98076 1.12261 1.20975 0.96010 0.94678 0.97460 1.75075 1.18050 1.27652 0.98229 1.78220 1.18206 0.98735 1.15558 0.90341 0.86963 0.93627 0.87404 0.92128 0.87005 0.88788 0.73046 0.90001 0.78941 0.81284 0.91472 0.91110 0.89433 0.90415 0.86761 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.52 71.98 0.69 -0.10 16 2 C 0.12 1.07 3.85 44.99 0.17 1.24 16 3 C -0.16 -0.37 8.84 71.98 0.64 0.27 16 4 N -0.28 -5.15 3.25 -327.19 -1.06 -6.21 16 5 C -0.02 -0.24 10.62 83.49 0.89 0.65 16 6 C -0.03 -0.74 6.51 41.60 0.27 -0.47 16 7 C -0.36 -7.28 6.49 71.23 0.46 -6.82 16 8 S 1.28 35.24 13.12 -56.49 -0.74 34.50 16 9 O -0.92 -42.36 18.14 -148.98 -2.70 -45.07 16 10 C -0.37 -10.57 6.04 71.24 0.43 -10.14 16 11 C -0.19 -8.04 5.16 -19.68 -0.10 -8.14 16 12 C -0.11 -5.83 9.67 22.22 0.21 -5.61 16 13 C -0.20 -11.40 8.70 22.73 0.20 -11.20 16 14 C 0.08 4.20 5.57 -21.29 -0.12 4.08 16 15 C -0.50 -27.37 9.05 23.46 0.21 -27.16 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 17 C 0.03 1.47 5.14 85.26 0.44 1.90 16 18 N -0.83 -46.32 10.97 21.83 0.24 -46.08 16 19 Si 0.98 39.80 29.59 68.60 2.03 41.83 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.23 -10.87 9.80 22.73 0.22 -10.64 16 24 C -0.07 -2.75 9.67 22.22 0.21 -2.53 16 25 N -0.32 -11.32 12.41 -48.60 -0.60 -11.92 16 26 N -0.13 -3.88 13.17 37.02 0.49 -3.39 16 27 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.09 -0.15 7.18 -2.39 -0.02 -0.17 16 34 H 0.25 0.39 7.31 -2.91 -0.02 0.37 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.19 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.17 2.85 8.08 -2.39 -0.02 2.83 16 38 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 39 H 0.07 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.09 5.43 6.18 -2.91 -0.02 5.41 16 41 H 0.29 14.49 8.30 -92.70 -0.77 13.72 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -96.98 378.91 3.48 -93.51 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.01 Total: 17.51 kcal Atomic # 6 Polarization: -79.50 SS G_CDS: 4.82 Total: -74.67 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.94 Total: -67.61 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -2.70 Total: -45.07 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 35.24 SS G_CDS: -0.74 Total: 34.50 kcal Total: -96.98 3.48 -93.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559176228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.584 kcal (2) G-P(sol) polarization free energy of solvation -96.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds