Wall clock time and date at job start Tue Mar 31 2020 17:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29949 * 126.28831 * 2 1 4 4 O 1.21303 * 110.25062 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81195 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.55010 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46889 * 269.97378 * 6 5 4 8 8 C 1.50704 * 109.46889 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99781 * 355.26484 * 10 8 7 12 12 C 1.50705 * 109.46716 * 90.00269 * 11 10 8 13 13 H 1.07999 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99794 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00066 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00092 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47176 * 59.99583 * 16 14 12 18 18 H 1.48499 * 109.47122 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46924 * 299.99474 * 16 14 12 20 20 C 1.40029 * 120.00118 * 175.26713 * 10 8 7 21 21 C 1.38850 * 120.04424 * 291.85325 * 20 10 8 22 22 C 1.38108 * 119.95043 * 179.77131 * 21 20 10 23 23 C 1.38475 * 120.04744 * 0.50176 * 22 21 20 24 24 F 1.35102 * 119.95564 * 179.72488 * 23 22 21 25 25 C 1.38472 * 120.09090 * 359.74981 * 23 22 21 26 26 C 1.38118 * 120.04282 * 359.97438 * 25 23 22 27 27 N 1.31126 * 106.90011 * 0.02562 * 5 4 3 28 28 H 1.08993 * 109.47011 * 89.97921 * 1 2 3 29 29 H 1.08997 * 109.47461 * 209.97796 * 1 2 3 30 30 H 1.08999 * 109.47012 * 329.98003 * 1 2 3 31 31 H 1.08998 * 109.47263 * 29.97302 * 6 5 4 32 32 H 1.08996 * 109.46907 * 149.97484 * 6 5 4 33 33 H 1.08998 * 109.47106 * 300.00021 * 7 6 5 34 34 H 1.08996 * 109.47260 * 60.00322 * 7 6 5 35 35 H 1.09000 * 109.47219 * 209.99968 * 11 10 8 36 36 H 1.08999 * 109.47207 * 330.00616 * 11 10 8 37 37 H 0.96995 * 119.99981 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.02106 * 0.02562 * 21 20 10 39 39 H 1.08004 * 119.97724 * 180.22890 * 22 21 20 40 40 H 1.08001 * 119.97799 * 179.97438 * 25 23 22 41 41 H 1.07995 * 120.01839 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0029 7 6 5.2263 -1.7146 -1.4392 8 6 6.4938 -2.5299 -1.4378 9 8 7.0037 -2.8563 -0.3868 10 7 7.0613 -2.8954 -2.6043 11 6 6.3924 -2.5902 -3.8716 12 6 6.8439 -1.2398 -4.3653 13 1 7.5572 -0.6661 -3.7922 14 6 6.3454 -0.7363 -5.5480 15 7 5.4762 -1.4347 -6.2456 16 14 6.9054 0.9373 -6.1604 17 1 8.3756 0.9217 -6.3685 18 1 6.2274 1.2467 -7.4448 19 1 6.5587 1.9737 -5.1550 20 6 8.2901 -3.5669 -2.6051 21 6 9.4437 -2.9059 -2.2050 22 6 10.6539 -3.5714 -2.2020 23 6 10.7189 -4.8938 -2.6076 24 9 11.9046 -5.5414 -2.6093 25 6 9.5704 -5.5533 -3.0120 26 6 8.3572 -4.8930 -3.0110 27 7 2.3030 -1.0841 0.0009 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 5.5840 -0.8849 0.5164 32 1 4.6204 -2.3814 0.5176 33 1 4.4393 -2.2667 -1.9528 34 1 5.4029 -0.7702 -1.9539 35 1 6.6476 -3.3508 -4.6095 36 1 5.3132 -2.5792 -3.7193 37 1 5.1258 -1.0806 -7.0779 38 1 9.3940 -1.8733 -1.8924 39 1 11.5509 -3.0587 -1.8874 40 1 9.6233 -6.5845 -3.3283 41 1 7.4618 -5.4076 -3.3269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561917919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:16 Heat of formation + Delta-G solvation = 9.324501 kcal Electronic energy + Delta-G solvation = -27750.208517 eV Core-core repulsion = 23548.010297 eV Total energy + Delta-G solvation = -4202.198220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.67203 -45.50981 -40.08146 -38.10530 -36.06345 -35.17768 -34.51883 -32.74073 -31.51681 -30.91636 -29.43961 -29.04891 -27.22273 -25.62272 -23.50491 -23.34357 -22.59343 -22.16246 -21.07259 -19.03475 -18.00096 -17.52456 -17.37646 -16.93930 -16.78554 -16.11187 -15.94122 -15.35326 -15.18978 -14.76207 -14.35306 -14.31141 -13.94355 -13.68405 -13.52967 -13.38654 -13.30866 -12.83658 -12.78523 -12.52556 -12.33975 -12.20111 -12.16267 -11.95492 -11.60408 -11.26132 -11.16339 -11.06489 -10.95438 -10.87171 -10.83697 -10.32879 -9.98997 -9.85435 -9.42968 -8.86042 -8.69147 -8.64092 -7.80754 -6.30977 -4.39397 1.18735 1.37769 1.50047 2.24773 2.84315 3.03764 3.17980 3.23632 3.26156 3.53550 3.72228 3.85814 4.06838 4.23975 4.49414 4.83866 4.99625 5.02083 5.03216 5.06089 5.13267 5.25028 5.26199 5.35709 5.50208 5.53970 5.63634 5.71612 5.81671 5.88150 5.91117 6.08469 6.11848 6.18684 6.33790 6.40702 6.60327 6.70229 6.95899 7.04230 7.40937 7.62341 7.86870 7.97110 8.21736 8.58465 8.73041 9.29153 10.75945 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.003664 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.866012 B = 7639.866008 C = 9668.896936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.390 5.390 4 O 0.078 5.922 5 C 0.197 3.803 6 C -0.013 4.013 7 C -0.132 4.132 8 C 0.528 3.472 9 O -0.558 6.558 10 N -0.559 5.559 11 C 0.237 3.763 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.167 3.833 21 C -0.078 4.078 22 C -0.144 4.144 23 C 0.080 3.920 24 F -0.147 7.147 25 C -0.144 4.144 26 C -0.095 4.095 27 N -0.484 5.484 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -2.268 8.963 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 N -0.099 5.099 4 O 0.020 5.980 5 C -0.023 4.023 6 C -0.052 4.052 7 C -0.173 4.173 8 C 0.318 3.682 9 O -0.437 6.437 10 N -0.286 5.286 11 C 0.119 3.881 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.076 3.924 21 C -0.098 4.098 22 C -0.164 4.164 23 C 0.061 3.939 24 F -0.125 7.125 25 C -0.164 4.164 26 C -0.115 4.115 27 N -0.219 5.219 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.236 -1.930 9.312 9.770 hybrid contribution 0.563 0.863 -0.814 1.313 sum -1.673 -1.067 8.498 8.727 Atomic orbital electron populations 1.20108 0.83140 1.04355 1.04318 1.25887 1.00548 0.83709 1.00677 1.74619 0.89485 1.24040 1.21778 1.85296 1.22220 1.24925 1.65559 1.28859 0.97002 0.82022 0.94450 1.20043 0.87576 0.98589 0.99035 1.21593 0.96698 1.03335 0.95632 1.20283 0.85788 0.79204 0.82942 1.90667 1.65431 1.56488 1.31121 1.45957 1.18899 1.54832 1.08952 1.19644 0.93013 0.97152 0.78272 1.21363 1.26943 1.02628 1.07233 0.91882 1.24915 0.94587 0.97849 0.96166 1.69897 1.29472 1.37952 1.15285 0.86576 0.79139 0.83703 0.78286 1.19953 1.21055 1.19915 1.17582 0.86119 0.90594 0.98153 1.21105 0.90641 0.99955 0.98088 1.20933 0.99041 0.93163 1.03215 1.17636 0.80991 0.91492 1.03783 1.91457 1.44921 1.81536 1.94626 1.20894 0.91324 1.00835 1.03316 1.21081 0.97668 0.93196 0.99564 1.71910 0.99749 1.29314 1.20881 0.89307 0.89148 0.89728 0.87304 0.86631 0.87838 0.86576 0.94088 0.93734 0.92269 0.85066 0.84890 0.84833 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 36.00 0.38 -0.19 16 2 C 0.16 2.31 8.22 -156.37 -1.28 1.02 16 3 N -0.39 -6.02 12.16 30.90 0.38 -5.64 16 4 O 0.08 1.18 11.31 18.11 0.20 1.38 16 5 C 0.20 2.81 7.77 -13.06 -0.10 2.71 16 6 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 7 C -0.13 -2.03 4.34 -27.88 -0.12 -2.15 16 8 C 0.53 9.44 7.53 -10.98 -0.08 9.35 16 9 O -0.56 -10.67 15.75 5.55 0.09 -10.59 16 10 N -0.56 -10.64 2.51 -114.71 -0.29 -10.93 16 11 C 0.24 5.13 4.88 -5.19 -0.03 5.11 16 12 C -0.54 -13.06 9.16 -34.44 -0.32 -13.37 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -23.38 13.29 55.43 0.74 -22.64 16 16 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.17 3.03 4.75 -83.66 -0.40 2.63 16 21 C -0.08 -1.33 9.56 -39.40 -0.38 -1.70 16 22 C -0.14 -2.16 10.02 -39.54 -0.40 -2.56 16 23 C 0.08 1.21 7.30 -39.41 -0.29 0.92 16 24 F -0.15 -2.15 17.27 2.25 0.04 -2.11 16 25 C -0.14 -2.09 10.02 -39.54 -0.40 -2.49 16 26 C -0.10 -1.54 9.69 -39.40 -0.38 -1.92 16 27 N -0.48 -7.26 11.55 -9.87 -0.11 -7.37 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.12 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.10 1.60 7.26 -51.93 -0.38 1.22 16 34 H 0.12 1.91 7.91 -51.93 -0.41 1.50 16 35 H 0.04 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.04 0.98 6.47 -51.93 -0.34 0.64 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -28.85 367.49 -7.35 -36.20 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.88 Total: 2.72 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.03 Total: -1.33 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.71 Total: -46.59 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.29 Total: -9.21 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.85 -7.35 -36.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561917919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.521 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds