Wall clock time and date at job start Tue Mar 31 2020 17:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29949 * 126.28831 * 2 1 4 4 O 1.21303 * 110.25062 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81195 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.55010 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46889 * 269.97378 * 6 5 4 8 8 C 1.50704 * 109.46889 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99781 * 355.26484 * 10 8 7 12 12 C 1.50705 * 109.46716 * 90.00269 * 11 10 8 13 13 H 1.07999 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99794 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00066 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00092 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47176 * 59.99583 * 16 14 12 18 18 H 1.48499 * 109.47122 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46924 * 299.99474 * 16 14 12 20 20 C 1.40029 * 120.00118 * 175.26713 * 10 8 7 21 21 C 1.38850 * 120.04424 * 291.85325 * 20 10 8 22 22 C 1.38108 * 119.95043 * 179.77131 * 21 20 10 23 23 C 1.38475 * 120.04744 * 0.50176 * 22 21 20 24 24 F 1.35102 * 119.95564 * 179.72488 * 23 22 21 25 25 C 1.38472 * 120.09090 * 359.74981 * 23 22 21 26 26 C 1.38118 * 120.04282 * 359.97438 * 25 23 22 27 27 N 1.31126 * 106.90011 * 0.02562 * 5 4 3 28 28 H 1.08993 * 109.47011 * 89.97921 * 1 2 3 29 29 H 1.08997 * 109.47461 * 209.97796 * 1 2 3 30 30 H 1.08999 * 109.47012 * 329.98003 * 1 2 3 31 31 H 1.08998 * 109.47263 * 29.97302 * 6 5 4 32 32 H 1.08996 * 109.46907 * 149.97484 * 6 5 4 33 33 H 1.08998 * 109.47106 * 300.00021 * 7 6 5 34 34 H 1.08996 * 109.47260 * 60.00322 * 7 6 5 35 35 H 1.09000 * 109.47219 * 209.99968 * 11 10 8 36 36 H 1.08999 * 109.47207 * 330.00616 * 11 10 8 37 37 H 0.96995 * 119.99981 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.02106 * 0.02562 * 21 20 10 39 39 H 1.08004 * 119.97724 * 180.22890 * 22 21 20 40 40 H 1.08001 * 119.97799 * 179.97438 * 25 23 22 41 41 H 1.07995 * 120.01839 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0029 7 6 5.2263 -1.7146 -1.4392 8 6 6.4938 -2.5299 -1.4378 9 8 7.0037 -2.8563 -0.3868 10 7 7.0613 -2.8954 -2.6043 11 6 6.3924 -2.5902 -3.8716 12 6 6.8439 -1.2398 -4.3653 13 1 7.5572 -0.6661 -3.7922 14 6 6.3454 -0.7363 -5.5480 15 7 5.4762 -1.4347 -6.2456 16 14 6.9054 0.9373 -6.1604 17 1 8.3756 0.9217 -6.3685 18 1 6.2274 1.2467 -7.4448 19 1 6.5587 1.9737 -5.1550 20 6 8.2901 -3.5669 -2.6051 21 6 9.4437 -2.9059 -2.2050 22 6 10.6539 -3.5714 -2.2020 23 6 10.7189 -4.8938 -2.6076 24 9 11.9046 -5.5414 -2.6093 25 6 9.5704 -5.5533 -3.0120 26 6 8.3572 -4.8930 -3.0110 27 7 2.3030 -1.0841 0.0009 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 5.5840 -0.8849 0.5164 32 1 4.6204 -2.3814 0.5176 33 1 4.4393 -2.2667 -1.9528 34 1 5.4029 -0.7702 -1.9539 35 1 6.6476 -3.3508 -4.6095 36 1 5.3132 -2.5792 -3.7193 37 1 5.1258 -1.0806 -7.0779 38 1 9.3940 -1.8733 -1.8924 39 1 11.5509 -3.0587 -1.8874 40 1 9.6233 -6.5845 -3.3283 41 1 7.4618 -5.4076 -3.3269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561917919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:13 Heat of formation + Delta-G solvation = -5.995873 kcal Electronic energy + Delta-G solvation = -27750.872858 eV Core-core repulsion = 23548.010297 eV Total energy + Delta-G solvation = -4202.862561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -49.85382 -46.62732 -41.48601 -39.40236 -37.16591 -36.70811 -35.68363 -34.56567 -32.68092 -32.13584 -30.72609 -30.04191 -28.92403 -26.86399 -25.07756 -24.57269 -23.91970 -23.40409 -22.17876 -20.39498 -19.16442 -18.81299 -18.67517 -18.54746 -18.08904 -17.62226 -17.30177 -16.53907 -16.48199 -16.37929 -15.64803 -15.50197 -15.11676 -14.84058 -14.57987 -14.51117 -14.46665 -14.25978 -14.04754 -13.78911 -13.59552 -13.55871 -13.37340 -13.22389 -13.16411 -12.86181 -12.63305 -12.31422 -12.23153 -12.16494 -12.10407 -12.06106 -11.75037 -11.04963 -10.83738 -10.59196 -10.09006 -10.07382 -9.22747 -8.22366 -6.35660 0.04941 0.11423 0.27980 1.15704 1.41912 1.43555 1.49245 1.61344 1.71704 2.16477 2.40417 2.59810 2.68278 3.06665 3.09867 3.28383 3.62899 3.80693 3.86042 3.93466 4.03263 4.07397 4.27423 4.42540 4.45934 4.49036 4.57476 4.58338 4.61896 4.81891 4.90930 4.92643 4.94971 5.02358 5.10350 5.11727 5.16010 5.17205 5.45295 5.63049 5.71336 6.00832 6.02394 6.42544 6.75447 7.10286 7.20089 7.36929 8.83068 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.003664 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.866012 B = 7639.866008 C = 9668.896936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.163 3.837 3 N -0.411 5.411 4 O 0.065 5.935 5 C 0.199 3.801 6 C -0.002 4.002 7 C -0.123 4.123 8 C 0.528 3.472 9 O -0.569 6.569 10 N -0.561 5.561 11 C 0.253 3.747 12 C -0.543 4.543 13 H 0.059 0.941 14 C 0.026 3.974 15 N -0.918 5.918 16 Si 0.947 3.053 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.134 3.866 21 C -0.093 4.093 22 C -0.140 4.140 23 C 0.078 3.922 24 F -0.142 7.142 25 C -0.136 4.136 26 C -0.104 4.104 27 N -0.501 5.501 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.127 0.873 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -2.481 9.487 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.124 5.124 4 O 0.010 5.990 5 C -0.021 4.021 6 C -0.041 4.041 7 C -0.164 4.164 8 C 0.319 3.681 9 O -0.449 6.449 10 N -0.288 5.288 11 C 0.134 3.866 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.175 4.175 15 N -0.557 5.557 16 Si 0.773 3.227 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.195 1.195 20 C 0.043 3.957 21 C -0.113 4.113 22 C -0.159 4.159 23 C 0.059 3.941 24 F -0.121 7.121 25 C -0.155 4.155 26 C -0.123 4.123 27 N -0.236 5.236 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.861 -2.146 9.853 10.255 hybrid contribution 0.508 0.850 -0.948 1.371 sum -1.353 -1.296 8.906 9.100 Atomic orbital electron populations 1.20359 0.80178 1.05959 1.05461 1.26712 1.02272 0.83004 0.99002 1.74615 0.89671 1.24852 1.23245 1.85269 1.22441 1.25233 1.66011 1.29026 0.97267 0.81908 0.93873 1.20003 0.87508 0.99103 0.97491 1.21492 0.95532 1.02183 0.97210 1.20580 0.86131 0.78967 0.82434 1.90650 1.65953 1.57053 1.31247 1.45841 1.19405 1.55268 1.08271 1.19256 0.92781 0.95548 0.79042 1.21602 1.26190 1.03400 1.06963 0.92282 1.25550 0.94812 1.00559 0.96554 1.69984 1.30723 1.39306 1.15707 0.85761 0.78656 0.80541 0.77741 1.19755 1.21063 1.19513 1.17943 0.86027 0.91680 1.00075 1.21161 0.91144 1.00059 0.98921 1.21156 0.99179 0.93303 1.02231 1.17749 0.81291 0.91580 1.03475 1.91473 1.44646 1.81405 1.94550 1.21177 0.90385 1.02020 1.01928 1.21234 0.98786 0.92718 0.99600 1.71940 1.00151 1.29949 1.21525 0.88222 0.87595 0.88078 0.85929 0.85673 0.88024 0.87685 0.95790 0.94204 0.92379 0.85466 0.82445 0.81938 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.51 71.23 0.75 -0.30 16 2 C 0.16 4.41 8.22 138.46 1.14 5.55 16 3 N -0.41 -12.52 12.16 -60.31 -0.73 -13.26 16 4 O 0.06 1.96 11.31 74.87 0.85 2.80 16 5 C 0.20 5.61 7.77 88.38 0.69 6.30 16 6 C 0.00 -0.05 5.13 29.85 0.15 0.10 16 7 C -0.12 -3.81 4.34 29.85 0.13 -3.68 16 8 C 0.53 18.87 7.53 87.66 0.66 19.53 16 9 O -0.57 -21.53 15.75 -3.06 -0.05 -21.57 16 10 N -0.56 -21.50 2.51 -635.22 -1.59 -23.09 16 11 C 0.25 11.12 4.88 85.63 0.42 11.53 16 12 C -0.54 -26.28 9.16 25.60 0.23 -26.04 16 13 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 14 C 0.03 1.31 5.46 84.65 0.46 1.77 16 15 N -0.92 -48.71 13.29 21.45 0.28 -48.42 16 16 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 C 0.13 4.82 4.75 38.12 0.18 5.01 16 21 C -0.09 -3.12 9.56 22.39 0.21 -2.90 16 22 C -0.14 -3.96 10.02 22.30 0.22 -3.74 16 23 C 0.08 2.19 7.30 22.38 0.16 2.36 16 24 F -0.14 -3.81 17.27 44.97 0.78 -3.04 16 25 C -0.14 -3.67 10.02 22.30 0.22 -3.45 16 26 C -0.10 -3.27 9.69 22.39 0.22 -3.05 16 27 N -0.50 -14.65 11.55 -303.19 -3.50 -18.16 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.12 2.77 8.10 -2.39 -0.02 2.75 16 32 H 0.13 2.97 8.10 -2.39 -0.02 2.95 16 33 H 0.10 3.17 7.26 -2.39 -0.02 3.15 16 34 H 0.10 3.50 7.91 -2.39 -0.02 3.48 16 35 H 0.02 1.13 7.86 -2.39 -0.02 1.12 16 36 H 0.04 1.78 6.47 -2.39 -0.02 1.77 16 37 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -60.60 367.49 4.98 -55.62 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.07 Total: 17.63 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.85 Total: 8.98 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -5.54 Total: -102.93 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.80 Total: -18.77 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -60.60 4.98 -55.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561917919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.624 kcal (2) G-P(sol) polarization free energy of solvation -60.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds