Wall clock time and date at job start Tue Mar 31 2020 17:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47222 * 2 1 4 4 N 1.46495 * 109.47002 * 119.99385 * 2 1 3 5 5 C 1.46494 * 120.00642 * 304.58689 * 4 2 1 6 6 C 1.50698 * 109.47320 * 263.13907 * 5 4 2 7 7 H 1.08007 * 119.99878 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99938 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00215 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99797 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47315 * 59.99190 * 10 8 6 12 12 H 1.48496 * 109.47361 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47145 * 299.99874 * 10 8 6 14 14 C 1.34778 * 119.99624 * 124.58775 * 4 2 1 15 15 O 1.21360 * 120.00233 * 354.66876 * 14 4 2 16 16 C 1.49351 * 120.00156 * 174.67761 * 14 4 2 17 17 O 1.21374 * 120.00047 * 0.82506 * 16 14 4 18 18 N 1.34781 * 120.00204 * 180.83036 * 16 14 4 19 19 C 1.39359 * 119.99942 * 185.42303 * 18 16 14 20 20 C 1.39242 * 119.90496 * 209.74035 * 19 18 16 21 21 C 1.37606 * 120.14121 * 179.71737 * 20 19 18 22 22 C 1.39843 * 119.95131 * 0.58181 * 21 20 19 23 23 C 1.43193 * 120.09618 * 179.71885 * 22 21 20 24 24 N 9.85603 * 150.51261 * 202.59129 * 4 1 2 25 25 C 1.40014 * 119.80417 * 359.44365 * 22 21 20 26 26 F 1.35105 * 120.06598 * 180.27714 * 25 22 21 27 27 C 1.38012 * 119.86527 * 0.25289 * 25 22 21 28 28 H 1.09006 * 109.47207 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.46811 * 60.00193 * 1 2 3 30 30 H 1.08993 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47057 * 239.99890 * 2 1 3 32 32 H 1.08998 * 109.47179 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46630 * 299.99937 * 3 2 1 34 34 H 1.08996 * 109.47523 * 59.99559 * 3 2 1 35 35 H 1.09003 * 109.47108 * 23.13852 * 5 4 2 36 36 H 1.08993 * 109.47377 * 143.13463 * 5 4 2 37 37 H 0.96999 * 120.00063 * 180.02562 * 9 8 6 38 38 H 0.96992 * 120.00317 * 5.42415 * 18 16 14 39 39 H 1.07997 * 119.92530 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.02815 * 180.30128 * 21 20 19 41 41 H 1.07997 * 119.97934 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5836 -0.2512 2.5244 6 6 2.6238 0.6646 3.1161 7 1 3.5195 0.8960 2.5587 8 6 2.4326 1.2063 4.3696 9 7 1.3423 0.9242 5.0485 10 14 3.7223 2.3411 5.1033 11 1 3.8984 3.5246 4.2238 12 1 3.2816 2.7864 6.4496 13 1 5.0124 1.6146 5.2194 14 6 2.8676 -1.7299 1.0748 15 8 3.1522 -2.1557 -0.0255 16 6 3.4585 -2.3579 2.2942 17 8 3.1623 -1.9419 3.3953 18 7 4.3208 -3.3865 2.1720 19 6 4.7846 -4.0458 3.3089 20 6 6.0486 -4.6298 3.3056 21 6 6.5137 -5.2769 4.4274 22 6 5.7107 -5.3590 5.5694 23 6 6.1892 -6.0369 6.7364 24 7 6.5689 -6.5746 7.6623 25 6 4.4399 -4.7714 5.5702 26 9 3.6619 -4.8426 6.6725 27 6 3.9837 -4.1189 4.4429 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6366 0.2818 2.4389 36 1 1.4545 -1.1197 3.1702 37 1 1.2076 1.3056 5.9301 38 1 4.6186 -3.6680 1.2929 39 1 6.6669 -4.5712 2.4220 40 1 7.4963 -5.7251 4.4244 41 1 3.0036 -3.6653 4.4414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571964086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:29 Heat of formation + Delta-G solvation = -38.445552 kcal Electronic energy + Delta-G solvation = -28519.684920 eV Core-core repulsion = 24315.415236 eV Total energy + Delta-G solvation = -4204.269685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.05297 -40.89381 -39.43659 -38.05574 -36.59930 -36.23639 -34.60793 -32.88264 -31.37701 -30.98124 -30.30616 -27.31814 -26.80416 -25.53611 -23.42100 -23.11966 -22.92026 -20.68800 -19.30701 -19.14673 -18.15353 -17.28153 -16.79015 -16.49041 -16.29499 -15.82547 -15.68817 -15.19678 -14.94943 -14.55908 -14.29185 -14.08235 -13.84268 -13.79021 -13.60071 -13.40918 -13.28247 -12.97300 -12.62993 -12.38378 -12.34073 -12.27489 -11.93210 -11.86532 -11.65808 -11.49240 -11.11329 -10.94204 -10.87390 -10.66292 -10.41228 -10.27535 -10.01787 -9.68667 -9.12515 -8.82967 -8.39515 -8.31659 -7.96197 -6.08630 -4.10252 0.41699 1.00050 1.87597 2.52051 2.55914 2.78349 3.28427 3.34081 3.35923 3.51620 3.67269 3.73956 3.82749 4.03707 4.39670 4.52003 4.78433 4.82650 5.00597 5.26836 5.28078 5.32343 5.50745 5.64264 5.66163 5.67873 5.85308 5.96668 6.00343 6.01161 6.17570 6.20533 6.28630 6.54800 6.64051 6.66868 6.84761 7.11388 7.29038 7.35294 7.35860 7.79502 7.96519 8.08757 8.15032 8.49480 8.88467 9.52281 11.00150 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.004074 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.606386 B = 6871.431752 C = 8346.960331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.551 5.551 5 C 0.227 3.773 6 C -0.512 4.512 7 H 0.053 0.947 8 C 0.072 3.928 9 N -0.889 5.889 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.509 3.491 15 O -0.561 6.561 16 C 0.486 3.514 17 O -0.415 6.415 18 N -0.660 5.660 19 C 0.228 3.772 20 C -0.166 4.166 21 C -0.017 4.017 22 C -0.098 4.098 23 C 0.262 3.738 24 N -0.419 5.419 25 C 0.177 3.823 26 F -0.123 7.123 27 C -0.169 4.169 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.263 0.737 38 H 0.423 0.577 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 -8.634 -8.345 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.281 5.281 5 C 0.109 3.891 6 C -0.551 4.551 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.527 5.527 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.291 3.709 15 O -0.443 6.443 16 C 0.268 3.732 17 O -0.281 6.281 18 N -0.307 5.307 19 C 0.130 3.870 20 C -0.187 4.187 21 C -0.039 4.039 22 C -0.104 4.104 23 C -0.053 4.053 24 N -0.095 5.095 25 C 0.155 3.845 26 F -0.101 7.101 27 C -0.190 4.190 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.261 0.739 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.839 -9.203 -6.477 12.250 hybrid contribution 0.592 0.903 0.071 1.082 sum 5.431 -8.299 -6.406 11.807 Atomic orbital electron populations 1.22135 0.94919 1.02042 1.02661 1.21062 0.94170 0.93609 0.88214 1.22091 1.01393 0.95378 1.02432 1.48396 1.41161 1.27964 1.10611 1.19934 0.96061 0.97313 0.75813 1.21116 1.05012 1.27449 1.01519 0.92833 1.24768 0.95347 0.96465 0.96521 1.69880 1.25857 1.44160 1.12843 0.86702 0.82173 0.80981 0.78400 1.20368 1.21245 1.20314 1.19587 0.81206 0.82118 0.88037 1.90659 1.62676 1.63879 1.27111 1.20610 0.80797 0.80428 0.91396 1.91029 1.53807 1.56627 1.26620 1.43341 1.46081 1.32410 1.08855 1.17639 0.91494 0.90729 0.87180 1.20835 0.94158 1.03532 1.00175 1.20742 0.98497 0.95024 0.89594 1.15937 0.95261 1.07609 0.91591 1.25331 0.93874 0.93313 0.92772 1.81224 1.08078 1.10216 1.09946 1.17335 0.87453 0.96187 0.83563 1.91570 1.73761 1.93956 1.50835 1.21209 1.03337 1.02734 0.91757 0.91163 0.91888 0.92736 0.89200 0.92767 0.92702 0.90330 0.94382 0.92069 0.92718 0.73888 0.83738 0.83683 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.10 37.16 0.34 -1.94 16 2 C 0.13 2.17 3.25 -67.93 -0.22 1.95 16 3 C -0.16 -2.46 8.92 37.16 0.33 -2.13 16 4 N -0.55 -10.60 2.38 -168.02 -0.40 -11.00 16 5 C 0.23 5.14 4.11 -5.20 -0.02 5.12 16 6 C -0.51 -12.85 6.82 -34.44 -0.23 -13.08 16 7 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 8 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 10 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.51 9.41 7.67 -11.63 -0.09 9.32 16 15 O -0.56 -10.32 15.83 5.49 0.09 -10.24 16 16 C 0.49 8.51 7.47 -11.63 -0.09 8.43 16 17 O -0.42 -8.69 9.54 5.48 0.05 -8.64 16 18 N -0.66 -8.61 5.32 -10.29 -0.05 -8.67 16 19 C 0.23 2.78 6.34 -83.77 -0.53 2.25 16 20 C -0.17 -1.46 9.93 -39.44 -0.39 -1.85 16 21 C -0.02 -0.15 9.74 -39.21 -0.38 -0.53 16 22 C -0.10 -1.13 5.75 -106.71 -0.61 -1.75 16 23 C 0.26 3.43 14.97 -22.47 -0.34 3.09 16 24 N -0.42 -6.26 18.54 41.84 0.78 -5.49 16 25 C 0.18 2.40 7.27 -39.00 -0.28 2.12 16 26 F -0.12 -1.87 16.81 2.25 0.04 -1.83 16 27 C -0.17 -2.39 8.62 -39.37 -0.34 -2.73 16 28 H 0.07 1.10 6.50 -51.93 -0.34 0.76 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.44 6.91 -51.93 -0.36 1.08 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.42 7.30 -51.93 -0.38 1.04 16 35 H 0.04 0.90 6.20 -51.93 -0.32 0.57 16 36 H 0.06 1.51 5.86 -51.93 -0.30 1.21 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.42 4.45 8.28 -40.82 -0.34 4.11 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.17 2.70 6.13 -52.49 -0.32 2.38 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -30.06 359.97 -5.76 -35.82 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.44 Total: 2.49 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.96 Total: 10.05 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 1.06 Total: -48.96 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.14 Total: -18.88 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.06 -5.76 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571964086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.623 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds