Wall clock time and date at job start Tue Mar 31 2020 17:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47222 * 2 1 4 4 N 1.46495 * 109.47002 * 119.99385 * 2 1 3 5 5 C 1.46494 * 120.00642 * 304.58689 * 4 2 1 6 6 C 1.50698 * 109.47320 * 263.13907 * 5 4 2 7 7 H 1.08007 * 119.99878 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99938 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00215 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99797 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47315 * 59.99190 * 10 8 6 12 12 H 1.48496 * 109.47361 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47145 * 299.99874 * 10 8 6 14 14 C 1.34778 * 119.99624 * 124.58775 * 4 2 1 15 15 O 1.21360 * 120.00233 * 354.66876 * 14 4 2 16 16 C 1.49351 * 120.00156 * 174.67761 * 14 4 2 17 17 O 1.21374 * 120.00047 * 0.82506 * 16 14 4 18 18 N 1.34781 * 120.00204 * 180.83036 * 16 14 4 19 19 C 1.39359 * 119.99942 * 185.42303 * 18 16 14 20 20 C 1.39242 * 119.90496 * 209.74035 * 19 18 16 21 21 C 1.37606 * 120.14121 * 179.71737 * 20 19 18 22 22 C 1.39843 * 119.95131 * 0.58181 * 21 20 19 23 23 C 1.43193 * 120.09618 * 179.71885 * 22 21 20 24 24 N 9.85603 * 150.51261 * 202.59129 * 4 1 2 25 25 C 1.40014 * 119.80417 * 359.44365 * 22 21 20 26 26 F 1.35105 * 120.06598 * 180.27714 * 25 22 21 27 27 C 1.38012 * 119.86527 * 0.25289 * 25 22 21 28 28 H 1.09006 * 109.47207 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.46811 * 60.00193 * 1 2 3 30 30 H 1.08993 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47057 * 239.99890 * 2 1 3 32 32 H 1.08998 * 109.47179 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46630 * 299.99937 * 3 2 1 34 34 H 1.08996 * 109.47523 * 59.99559 * 3 2 1 35 35 H 1.09003 * 109.47108 * 23.13852 * 5 4 2 36 36 H 1.08993 * 109.47377 * 143.13463 * 5 4 2 37 37 H 0.96999 * 120.00063 * 180.02562 * 9 8 6 38 38 H 0.96992 * 120.00317 * 5.42415 * 18 16 14 39 39 H 1.07997 * 119.92530 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.02815 * 180.30128 * 21 20 19 41 41 H 1.07997 * 119.97934 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5836 -0.2512 2.5244 6 6 2.6238 0.6646 3.1161 7 1 3.5195 0.8960 2.5587 8 6 2.4326 1.2063 4.3696 9 7 1.3423 0.9242 5.0485 10 14 3.7223 2.3411 5.1033 11 1 3.8984 3.5246 4.2238 12 1 3.2816 2.7864 6.4496 13 1 5.0124 1.6146 5.2194 14 6 2.8676 -1.7299 1.0748 15 8 3.1522 -2.1557 -0.0255 16 6 3.4585 -2.3579 2.2942 17 8 3.1623 -1.9419 3.3953 18 7 4.3208 -3.3865 2.1720 19 6 4.7846 -4.0458 3.3089 20 6 6.0486 -4.6298 3.3056 21 6 6.5137 -5.2769 4.4274 22 6 5.7107 -5.3590 5.5694 23 6 6.1892 -6.0369 6.7364 24 7 6.5689 -6.5746 7.6623 25 6 4.4399 -4.7714 5.5702 26 9 3.6619 -4.8426 6.6725 27 6 3.9837 -4.1189 4.4429 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6366 0.2818 2.4389 36 1 1.4545 -1.1197 3.1702 37 1 1.2076 1.3056 5.9301 38 1 4.6186 -3.6680 1.2929 39 1 6.6669 -4.5712 2.4220 40 1 7.4963 -5.7251 4.4244 41 1 3.0036 -3.6653 4.4414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571964086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:28 Heat of formation + Delta-G solvation = -56.451314 kcal Electronic energy + Delta-G solvation = -28520.465709 eV Core-core repulsion = 24315.415236 eV Total energy + Delta-G solvation = -4205.050473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.17075 -42.18631 -40.64492 -39.31082 -37.87401 -37.55915 -35.78350 -34.76873 -32.88559 -31.93405 -31.32799 -29.16648 -28.03620 -26.80250 -24.96156 -24.41413 -24.05631 -21.93211 -20.49587 -20.25616 -19.39170 -18.67078 -18.51444 -17.93415 -17.53963 -16.95810 -16.77426 -16.62367 -16.53703 -16.00069 -15.58411 -15.23836 -15.15790 -14.87503 -14.73894 -14.64587 -14.49039 -14.26898 -14.03525 -13.84218 -13.60605 -13.39649 -13.29645 -13.21091 -12.95288 -12.77298 -12.74436 -12.53902 -12.35640 -12.24595 -11.88966 -11.64955 -11.52608 -11.46162 -10.59165 -10.21546 -9.96123 -9.59865 -9.33381 -8.09772 -6.15215 -0.58596 0.09432 0.50827 1.31997 1.40002 1.42466 1.47292 1.47679 1.74311 2.24418 2.41440 2.55208 2.66422 2.71608 2.99556 3.25551 3.37626 3.69284 3.96465 4.03537 4.06653 4.25346 4.35496 4.41727 4.65583 4.70775 4.84513 4.84780 4.93482 4.96489 5.00836 5.10411 5.12370 5.15774 5.28654 5.47611 5.50691 5.58523 5.70623 5.81431 6.08253 6.17494 6.31817 6.37424 6.77014 6.87726 7.08069 7.49709 8.98168 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.004074 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.606386 B = 6871.431752 C = 8346.960331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 C -0.148 4.148 4 N -0.560 5.560 5 C 0.249 3.751 6 C -0.501 4.501 7 H 0.047 0.953 8 C 0.024 3.976 9 N -0.922 5.922 10 Si 0.939 3.061 11 H -0.266 1.266 12 H -0.289 1.289 13 H -0.281 1.281 14 C 0.506 3.494 15 O -0.557 6.557 16 C 0.487 3.513 17 O -0.459 6.459 18 N -0.639 5.639 19 C 0.213 3.787 20 C -0.137 4.137 21 C 0.005 3.995 22 C -0.094 4.094 23 C 0.280 3.720 24 N -0.453 5.453 25 C 0.156 3.844 26 F -0.142 7.142 27 C -0.186 4.186 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.026 0.974 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.437 0.563 39 H 0.190 0.810 40 H 0.190 0.810 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -9.240 -10.710 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 C -0.206 4.206 4 N -0.290 5.290 5 C 0.128 3.872 6 C -0.540 4.540 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.563 5.563 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.206 1.206 14 C 0.288 3.712 15 O -0.439 6.439 16 C 0.269 3.731 17 O -0.328 6.328 18 N -0.288 5.288 19 C 0.115 3.885 20 C -0.157 4.157 21 C -0.015 4.015 22 C -0.100 4.100 23 C -0.035 4.035 24 N -0.129 5.129 25 C 0.134 3.866 26 F -0.121 7.121 27 C -0.208 4.208 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.279 0.721 39 H 0.207 0.793 40 H 0.208 0.792 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.337 -9.840 -8.894 15.158 hybrid contribution -0.126 0.987 0.697 1.215 sum 7.211 -8.854 -8.197 14.056 Atomic orbital electron populations 1.22086 0.93393 1.02295 1.03268 1.21344 0.95489 0.93648 0.87218 1.22028 1.00600 0.95130 1.02805 1.48381 1.41747 1.28646 1.10221 1.19399 0.94900 0.95701 0.77166 1.21275 1.04774 1.26818 1.01146 0.93498 1.25408 0.96837 0.98018 0.97213 1.69988 1.27518 1.45694 1.13058 0.85905 0.79933 0.79788 0.77777 1.19143 1.21424 1.20638 1.19807 0.80951 0.81918 0.88524 1.90646 1.62518 1.63688 1.27025 1.20545 0.81068 0.81083 0.90392 1.91036 1.55655 1.58437 1.27696 1.43074 1.44664 1.30978 1.10045 1.17856 0.92816 0.91685 0.86140 1.21273 0.92331 1.00556 1.01548 1.21257 0.99397 0.93203 0.87688 1.16068 0.94580 1.07119 0.92185 1.25474 0.92935 0.92542 0.92523 1.81245 1.09406 1.11504 1.10787 1.17491 0.88396 0.97680 0.83059 1.91517 1.74532 1.94284 1.51734 1.21012 1.02821 1.03732 0.93218 0.93144 0.88591 0.92681 0.88217 0.93860 0.89160 0.93045 0.95591 0.94342 0.93094 0.72126 0.79291 0.79247 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.10 71.98 0.66 -3.55 16 2 C 0.12 3.97 3.25 44.99 0.15 4.11 16 3 C -0.15 -4.53 8.92 71.98 0.64 -3.89 16 4 N -0.56 -21.68 2.38 -803.85 -1.91 -23.59 16 5 C 0.25 11.66 4.11 85.63 0.35 12.01 16 6 C -0.50 -25.75 6.82 25.60 0.17 -25.58 16 7 H 0.05 2.43 7.81 -2.91 -0.02 2.40 16 8 C 0.02 1.32 5.46 84.66 0.46 1.78 16 9 N -0.92 -52.78 13.29 21.45 0.28 -52.49 16 10 Si 0.94 43.45 29.54 68.60 2.03 45.47 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 C 0.51 18.55 7.67 87.24 0.67 19.21 16 15 O -0.56 -19.59 15.83 -3.28 -0.05 -19.64 16 16 C 0.49 17.19 7.47 87.24 0.65 17.84 16 17 O -0.46 -20.06 9.54 -3.32 -0.03 -20.09 16 18 N -0.64 -15.76 5.32 -304.80 -1.62 -17.38 16 19 C 0.21 4.82 6.34 38.38 0.24 5.06 16 20 C -0.14 -1.78 9.93 22.36 0.22 -1.56 16 21 C 0.01 0.06 9.74 22.51 0.22 0.28 16 22 C -0.09 -1.99 5.75 -21.22 -0.12 -2.11 16 23 C 0.28 6.92 14.97 88.33 1.32 8.24 16 24 N -0.45 -13.16 18.54 19.00 0.35 -12.81 16 25 C 0.16 4.29 7.27 22.65 0.16 4.46 16 26 F -0.14 -4.59 16.81 44.97 0.76 -3.84 16 27 C -0.19 -5.42 8.62 22.41 0.19 -5.22 16 28 H 0.05 1.59 6.50 -2.38 -0.02 1.58 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 3.00 6.91 -2.39 -0.02 2.98 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.85 7.30 -2.39 -0.02 1.84 16 35 H 0.03 1.28 6.20 -2.39 -0.01 1.27 16 36 H 0.04 2.02 5.86 -2.39 -0.01 2.00 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.44 7.99 8.28 -92.71 -0.77 7.22 16 39 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.13 4.76 6.13 -2.91 -0.02 4.74 16 Total: -1.00 -69.06 359.97 6.14 -62.92 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.34 Total: 10.35 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 6.00 Total: 31.09 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -2.89 Total: -106.27 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.08 Total: -39.73 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.76 Total: -3.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.06 6.14 -62.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571964086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds