Wall clock time and date at job start Tue Mar 31 2020 17:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46503 * 109.47471 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00087 * 264.75641 * 4 3 2 6 6 H 1.07999 * 119.99808 * 146.16278 * 5 4 3 7 7 C 1.38944 * 120.00074 * 326.15927 * 5 4 3 8 8 N 1.31413 * 119.99959 * 337.67967 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 157.68596 * 7 5 4 10 10 H 1.48497 * 109.47304 * 59.99575 * 9 7 5 11 11 H 1.48503 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46995 * 300.00081 * 9 7 5 13 13 C 1.34777 * 119.99621 * 84.74965 * 4 3 2 14 14 O 1.21284 * 120.00186 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99837 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46857 * 179.97438 * 15 13 4 17 17 C 1.46501 * 120.00056 * 269.99644 * 16 15 13 18 18 C 1.38008 * 120.00279 * 89.99712 * 16 15 13 19 19 N 1.28899 * 124.81258 * 0.02562 * 18 16 15 20 20 C 1.34815 * 117.87117 * 179.97438 * 19 18 16 21 21 C 1.41100 * 128.72803 * 179.97438 * 20 19 18 22 22 C 1.37205 * 120.43636 * 180.02562 * 21 20 19 23 23 C 1.38716 * 120.59253 * 359.97438 * 22 21 20 24 24 C 1.37717 * 119.98051 * 359.97438 * 23 22 21 25 25 C 1.39261 * 120.20188 * 0.05093 * 24 23 22 26 26 S 1.75796 * 124.82042 * 179.97438 * 18 16 15 27 27 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47205 * 299.99776 * 1 2 3 29 29 H 1.09002 * 109.47020 * 60.00142 * 1 2 3 30 30 H 1.09002 * 109.47384 * 240.00090 * 2 1 3 31 31 H 1.09002 * 109.47020 * 119.99858 * 2 1 3 32 32 H 1.09006 * 109.46865 * 60.00315 * 3 2 1 33 33 H 1.08993 * 109.47435 * 300.00309 * 3 2 1 34 34 H 0.97002 * 119.99690 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47683 * 60.00095 * 15 13 4 36 36 H 1.09003 * 109.47018 * 299.99317 * 15 13 4 37 37 H 1.08995 * 109.47378 * 270.00216 * 17 16 15 38 38 H 1.08998 * 109.46705 * 30.00473 * 17 16 15 39 39 H 1.08998 * 109.47022 * 149.99807 * 17 16 15 40 40 H 1.07997 * 119.78608 * 0.04626 * 21 20 19 41 41 H 1.07993 * 119.70526 * 179.70586 * 22 21 20 42 42 H 1.07997 * 120.00686 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.90010 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6713 2.3193 2.2184 8 7 2.8003 3.2687 1.9595 9 14 4.2124 2.0027 3.9781 10 1 5.6805 2.1977 4.0873 11 1 3.5177 2.9491 4.8875 12 1 3.8687 0.6089 4.3584 13 6 4.1793 1.3356 -1.1614 14 8 5.3921 1.3352 -1.1610 15 6 3.4262 1.2165 -2.4614 16 7 4.3786 1.1150 -3.5699 17 6 4.8548 2.3277 -4.2399 18 6 4.8274 -0.1229 -3.9830 19 7 4.4705 -1.2466 -3.4618 20 6 4.9970 -2.3757 -3.9770 21 6 4.7700 -3.7129 -3.5880 22 6 5.4034 -4.7426 -4.2370 23 6 6.2756 -4.4864 -5.2848 24 6 6.5116 -3.1891 -5.6823 25 6 5.8777 -2.1317 -5.0346 26 16 5.9657 -0.3914 -5.2954 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 2.4379 3.8046 2.6823 35 1 2.7999 2.0976 -2.6006 36 1 2.7994 0.3251 -2.4377 37 1 4.1920 2.5675 -5.0714 38 1 4.8622 3.1554 -3.5308 39 1 5.8644 2.1624 -4.6160 40 1 4.0930 -3.9275 -2.7744 41 1 5.2247 -5.7613 -3.9265 42 1 6.7694 -5.3040 -5.7887 43 1 7.1912 -2.9911 -6.4980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582250365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:30 Heat of formation + Delta-G solvation = 38.512294 kcal Electronic energy + Delta-G solvation = -26363.968825 eV Core-core repulsion = 22729.249459 eV Total energy + Delta-G solvation = -3634.719366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.98857 -38.89156 -37.30696 -35.49980 -34.87877 -32.77566 -31.22472 -30.89109 -29.38084 -28.74890 -26.17713 -25.68032 -24.38538 -23.34221 -22.13756 -21.08369 -20.62374 -18.81076 -18.36204 -16.95530 -16.67772 -16.35026 -16.26108 -15.18666 -15.06470 -14.71782 -14.50707 -14.37078 -14.04756 -13.75544 -13.73057 -13.56624 -13.44750 -12.80834 -12.46616 -12.40221 -12.21644 -11.87072 -11.77844 -11.63644 -11.60885 -11.43647 -11.15445 -10.96385 -10.70371 -10.60804 -10.37608 -10.23527 -9.93883 -9.92260 -9.57476 -9.28833 -8.95027 -8.45343 -8.00548 -7.49976 -7.32288 -6.34638 -3.94918 0.83519 1.17430 1.26518 1.82791 2.67334 2.96846 3.18639 3.24581 3.29458 3.87332 3.91000 4.14228 4.46932 4.79936 4.86774 5.00381 5.01992 5.15605 5.31318 5.37754 5.46769 5.53508 5.56004 5.60470 5.67631 5.72462 5.77270 5.87478 5.99450 6.04987 6.20214 6.23577 6.32475 6.41137 6.48144 6.49149 6.61474 6.69340 6.90945 6.94213 7.17151 7.27959 7.58646 8.11429 8.23371 8.50383 9.18063 9.39964 9.99180 10.68526 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003478 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.479429 B = 8048.384432 C = 8428.902436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.100 3.900 4 N -0.438 5.438 5 C -0.304 4.304 6 H 0.090 0.910 7 C 0.037 3.963 8 N -0.870 5.870 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.443 3.557 14 O -0.573 6.573 15 C 0.112 3.888 16 N -0.550 5.550 17 C 0.095 3.905 18 C 0.408 3.592 19 N -0.552 5.552 20 C 0.149 3.851 21 C -0.093 4.093 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.057 4.057 25 C -0.202 4.202 26 S 0.020 5.980 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.268 0.732 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 -8.085 -14.045 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.024 4.024 4 N -0.157 5.157 5 C -0.432 4.432 6 H 0.108 0.892 7 C -0.167 4.167 8 N -0.508 5.508 9 Si 0.743 3.257 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.230 3.770 14 O -0.456 6.456 15 C -0.016 4.016 16 N -0.265 5.265 17 C -0.048 4.048 18 C 0.032 3.968 19 N -0.278 5.278 20 C 0.027 3.973 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.080 4.080 25 C -0.322 4.322 26 S 0.270 5.730 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.686 -6.964 -14.126 15.764 hybrid contribution -0.017 -0.749 1.304 1.504 sum -0.703 -7.713 -12.821 14.979 Atomic orbital electron populations 1.21669 0.96327 1.00718 1.01447 1.21985 0.94862 0.99176 1.02016 1.21701 0.81978 0.94645 1.04076 1.43492 1.04575 1.62935 1.04728 1.19396 1.06783 1.28259 0.88747 0.89223 1.25290 0.97306 0.93677 1.00419 1.69905 1.31007 1.16914 1.32991 0.86160 0.79119 0.78342 0.82110 1.19787 1.20949 1.19872 1.20635 0.88508 0.82912 0.84992 1.90527 1.13884 1.54651 1.86512 1.21612 0.90521 1.04135 0.85376 1.45525 1.46017 1.00834 1.34113 1.21841 0.99307 0.86162 0.97511 1.23679 0.91983 0.89345 0.91769 1.66246 1.33118 0.96042 1.32357 1.18862 0.93654 0.92607 0.92129 1.20599 1.01309 0.88687 1.00831 1.20850 0.96535 0.98678 0.95817 1.20892 1.00465 0.95663 0.98828 1.20194 0.98316 0.90786 0.98747 1.23364 1.07676 0.96191 1.04932 1.84646 1.49931 1.00487 1.37981 0.93426 0.92769 0.93235 0.92883 0.91696 0.86671 0.93716 0.92194 0.88447 0.87855 0.92024 0.89458 0.91293 0.85191 0.85367 0.85459 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.60 6.17 -26.73 -0.16 -2.77 16 3 C 0.10 2.12 4.71 -4.04 -0.02 2.11 16 4 N -0.44 -10.99 2.56 -114.82 -0.29 -11.28 16 5 C -0.30 -8.44 8.98 -14.94 -0.13 -8.57 16 6 H 0.09 2.66 7.70 -52.49 -0.40 2.26 16 7 C 0.04 0.97 4.92 -17.47 -0.09 0.88 16 8 N -0.87 -22.90 11.33 55.50 0.63 -22.27 16 9 Si 0.92 20.64 29.61 -169.99 -5.03 15.60 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.44 10.81 7.66 -10.98 -0.08 10.72 16 14 O -0.57 -16.18 16.25 5.55 0.09 -16.09 16 15 C 0.11 2.10 4.60 -5.19 -0.02 2.07 16 16 N -0.55 -9.64 2.45 -184.18 -0.45 -10.09 16 17 C 0.09 1.29 10.41 59.85 0.62 1.91 16 18 C 0.41 7.44 7.87 -88.90 -0.70 6.74 16 19 N -0.55 -10.79 9.79 -11.16 -0.11 -10.90 16 20 C 0.15 2.59 6.94 -84.90 -0.59 2.00 16 21 C -0.09 -1.35 10.10 -38.87 -0.39 -1.75 16 22 C -0.10 -1.13 9.99 -39.78 -0.40 -1.52 16 23 C -0.14 -1.49 10.05 -39.60 -0.40 -1.89 16 24 C -0.06 -0.72 10.06 -39.39 -0.40 -1.11 16 25 C -0.20 -3.15 6.52 -38.63 -0.25 -3.40 16 26 S 0.02 0.31 21.89 -107.50 -2.35 -2.05 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.97 6.60 -51.93 -0.34 0.63 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.12 2.70 5.34 -51.93 -0.28 2.43 16 33 H 0.04 0.85 6.66 -51.93 -0.35 0.50 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.10 1.57 7.34 -51.93 -0.38 1.19 16 36 H 0.10 1.92 5.99 -51.93 -0.31 1.60 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.22 8.07 -51.93 -0.42 0.81 16 39 H 0.07 0.89 7.04 -51.93 -0.37 0.53 16 40 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -33.22 370.08 -10.38 -43.60 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.79 Total: 4.23 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.64 Total: 3.68 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.23 Total: -54.55 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.35 Total: -2.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.22 -10.38 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582250365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.110 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds