Wall clock time and date at job start Tue Mar 31 2020 17:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46503 * 109.47471 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00087 * 264.75641 * 4 3 2 6 6 H 1.07999 * 119.99808 * 146.16278 * 5 4 3 7 7 C 1.38944 * 120.00074 * 326.15927 * 5 4 3 8 8 N 1.31413 * 119.99959 * 337.67967 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 157.68596 * 7 5 4 10 10 H 1.48497 * 109.47304 * 59.99575 * 9 7 5 11 11 H 1.48503 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46995 * 300.00081 * 9 7 5 13 13 C 1.34777 * 119.99621 * 84.74965 * 4 3 2 14 14 O 1.21284 * 120.00186 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99837 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46857 * 179.97438 * 15 13 4 17 17 C 1.46501 * 120.00056 * 269.99644 * 16 15 13 18 18 C 1.38008 * 120.00279 * 89.99712 * 16 15 13 19 19 N 1.28899 * 124.81258 * 0.02562 * 18 16 15 20 20 C 1.34815 * 117.87117 * 179.97438 * 19 18 16 21 21 C 1.41100 * 128.72803 * 179.97438 * 20 19 18 22 22 C 1.37205 * 120.43636 * 180.02562 * 21 20 19 23 23 C 1.38716 * 120.59253 * 359.97438 * 22 21 20 24 24 C 1.37717 * 119.98051 * 359.97438 * 23 22 21 25 25 C 1.39261 * 120.20188 * 0.05093 * 24 23 22 26 26 S 1.75796 * 124.82042 * 179.97438 * 18 16 15 27 27 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47205 * 299.99776 * 1 2 3 29 29 H 1.09002 * 109.47020 * 60.00142 * 1 2 3 30 30 H 1.09002 * 109.47384 * 240.00090 * 2 1 3 31 31 H 1.09002 * 109.47020 * 119.99858 * 2 1 3 32 32 H 1.09006 * 109.46865 * 60.00315 * 3 2 1 33 33 H 1.08993 * 109.47435 * 300.00309 * 3 2 1 34 34 H 0.97002 * 119.99690 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47683 * 60.00095 * 15 13 4 36 36 H 1.09003 * 109.47018 * 299.99317 * 15 13 4 37 37 H 1.08995 * 109.47378 * 270.00216 * 17 16 15 38 38 H 1.08998 * 109.46705 * 30.00473 * 17 16 15 39 39 H 1.08998 * 109.47022 * 149.99807 * 17 16 15 40 40 H 1.07997 * 119.78608 * 0.04626 * 21 20 19 41 41 H 1.07993 * 119.70526 * 179.70586 * 22 21 20 42 42 H 1.07997 * 120.00686 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.90010 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6713 2.3193 2.2184 8 7 2.8003 3.2687 1.9595 9 14 4.2124 2.0027 3.9781 10 1 5.6805 2.1977 4.0873 11 1 3.5177 2.9491 4.8875 12 1 3.8687 0.6089 4.3584 13 6 4.1793 1.3356 -1.1614 14 8 5.3921 1.3352 -1.1610 15 6 3.4262 1.2165 -2.4614 16 7 4.3786 1.1150 -3.5699 17 6 4.8548 2.3277 -4.2399 18 6 4.8274 -0.1229 -3.9830 19 7 4.4705 -1.2466 -3.4618 20 6 4.9970 -2.3757 -3.9770 21 6 4.7700 -3.7129 -3.5880 22 6 5.4034 -4.7426 -4.2370 23 6 6.2756 -4.4864 -5.2848 24 6 6.5116 -3.1891 -5.6823 25 6 5.8777 -2.1317 -5.0346 26 16 5.9657 -0.3914 -5.2954 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 2.4379 3.8046 2.6823 35 1 2.7999 2.0976 -2.6006 36 1 2.7994 0.3251 -2.4377 37 1 4.1920 2.5675 -5.0714 38 1 4.8622 3.1554 -3.5308 39 1 5.8644 2.1624 -4.6160 40 1 4.0930 -3.9275 -2.7744 41 1 5.2247 -5.7613 -3.9265 42 1 6.7694 -5.3040 -5.7887 43 1 7.1912 -2.9911 -6.4980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582250365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:29 Heat of formation + Delta-G solvation = 19.783515 kcal Electronic energy + Delta-G solvation = -26364.780966 eV Core-core repulsion = 22729.249459 eV Total energy + Delta-G solvation = -3635.531507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19762 -40.55128 -38.63221 -37.13321 -36.30533 -34.55764 -33.03785 -31.89942 -30.51098 -30.22318 -27.65867 -27.08691 -26.12441 -24.48828 -23.24603 -22.57385 -22.03661 -20.44335 -19.48869 -18.87067 -18.12325 -17.87689 -17.45760 -16.87858 -16.31521 -16.17331 -15.91632 -15.78453 -15.41854 -15.27058 -15.19070 -14.82387 -14.62573 -14.20283 -14.05601 -13.59207 -13.43617 -13.33077 -13.25278 -13.05633 -12.91725 -12.83337 -12.69118 -12.62496 -12.23528 -12.12347 -12.00251 -11.77490 -11.54191 -11.03491 -10.91341 -10.88234 -10.55485 -10.19958 -9.47314 -9.09652 -8.58998 -8.34758 -6.05096 -0.30849 -0.01715 0.24725 0.66406 1.35142 1.38364 1.47122 1.52525 1.78369 2.01204 2.27852 2.83324 2.96702 3.07195 3.35804 3.79149 3.95660 4.01025 4.09451 4.17622 4.18405 4.30874 4.39472 4.40972 4.45832 4.52241 4.60186 4.64788 4.70049 4.74745 4.98097 4.99126 5.13761 5.20168 5.27749 5.33742 5.38711 5.44304 5.49839 5.54383 5.60384 5.87401 5.93596 6.18584 6.52278 6.90245 7.17056 7.45351 8.05089 8.64915 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003478 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.479429 B = 8048.384432 C = 8428.902436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.450 5.450 5 C -0.342 4.342 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.881 5.881 9 Si 0.974 3.026 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.268 1.268 13 C 0.431 3.569 14 O -0.624 6.624 15 C 0.130 3.870 16 N -0.561 5.561 17 C 0.091 3.909 18 C 0.377 3.623 19 N -0.587 5.587 20 C 0.104 3.896 21 C -0.115 4.115 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.064 4.064 25 C -0.222 4.222 26 S 0.058 5.942 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.275 0.725 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -9.561 -15.618 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C -0.021 4.021 4 N -0.169 5.169 5 C -0.470 4.470 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.518 5.518 9 Si 0.798 3.202 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.194 1.194 13 C 0.219 3.781 14 O -0.510 6.510 15 C 0.001 3.999 16 N -0.276 5.276 17 C -0.051 4.051 18 C 0.001 3.999 19 N -0.314 5.314 20 C -0.016 4.016 21 C -0.137 4.137 22 C -0.108 4.108 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.341 4.341 26 S 0.307 5.693 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.314 -8.447 -15.721 17.895 hybrid contribution 0.255 -0.425 1.736 1.805 sum -1.059 -8.873 -13.985 16.596 Atomic orbital electron populations 1.21614 0.92965 1.02311 1.02399 1.21866 0.97635 0.96880 1.00692 1.21795 0.79802 0.96444 1.04058 1.43761 1.06097 1.62623 1.04392 1.19232 1.06806 1.29844 0.91133 0.92830 1.25926 0.97118 0.92903 1.03300 1.69949 1.30953 1.16680 1.34249 0.85303 0.78307 0.78719 0.77882 1.20554 1.18990 1.19353 1.21630 0.88332 0.81474 0.86641 1.90471 1.16267 1.56742 1.87566 1.21375 0.90281 1.05292 0.82988 1.45684 1.46340 1.01720 1.33890 1.22052 1.00402 0.84542 0.98090 1.23987 0.93276 0.89314 0.93281 1.66213 1.34323 0.97187 1.33653 1.19235 0.95495 0.93019 0.93821 1.20857 1.02437 0.88688 1.01687 1.21315 0.95058 0.99442 0.94945 1.21456 0.98885 0.96158 0.97637 1.20667 0.98219 0.90686 0.99129 1.23730 1.08073 0.97141 1.05162 1.84277 1.48495 1.00423 1.36109 0.91544 0.92795 0.91276 0.93074 0.94172 0.88724 0.91360 0.91481 0.85579 0.87772 0.88304 0.90392 0.91078 0.85659 0.81790 0.81136 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.13 -4.91 6.17 30.59 0.19 -4.72 16 3 C 0.10 4.40 4.71 86.38 0.41 4.81 16 4 N -0.45 -23.57 2.56 -635.55 -1.63 -25.20 16 5 C -0.34 -19.98 8.98 84.04 0.75 -19.23 16 6 H 0.05 3.44 7.70 -2.91 -0.02 3.42 16 7 C 0.01 0.57 4.92 84.92 0.42 0.99 16 8 N -0.88 -46.77 11.33 21.66 0.25 -46.52 16 9 Si 0.97 43.04 29.61 68.60 2.03 45.07 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.43 22.03 7.66 87.66 0.67 22.71 16 14 O -0.62 -37.44 16.25 -3.04 -0.05 -37.49 16 15 C 0.13 4.96 4.60 85.63 0.39 5.36 16 16 N -0.56 -20.04 2.45 -736.63 -1.80 -21.85 16 17 C 0.09 2.46 10.41 127.77 1.33 3.79 16 18 C 0.38 14.13 7.87 179.75 1.41 15.55 16 19 N -0.59 -23.92 9.79 -189.23 -1.85 -25.77 16 20 C 0.10 3.69 6.94 39.76 0.28 3.97 16 21 C -0.12 -3.35 10.10 22.73 0.23 -3.12 16 22 C -0.09 -1.77 9.99 22.14 0.22 -1.55 16 23 C -0.12 -2.15 10.05 22.26 0.22 -1.92 16 24 C -0.06 -1.43 10.06 22.39 0.23 -1.21 16 25 C -0.22 -6.79 6.52 22.89 0.15 -6.64 16 26 S 0.06 1.73 21.89 -56.49 -1.24 0.49 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.90 6.60 -2.39 -0.02 1.89 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 4.51 5.34 -2.38 -0.01 4.49 16 33 H 0.07 2.56 6.66 -2.39 -0.02 2.54 16 34 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.13 3.99 7.34 -2.39 -0.02 3.98 16 36 H 0.10 3.96 5.99 -2.39 -0.01 3.94 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.22 8.07 -2.39 -0.02 2.21 16 39 H 0.07 1.85 7.04 -2.39 -0.02 1.84 16 40 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -77.86 370.08 4.35 -73.51 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.02 Total: 22.03 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.62 Total: 15.72 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.04 Total: -119.33 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.05 Total: -37.49 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.24 Total: 0.49 kcal Total: -77.86 4.35 -73.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582250365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.294 kcal (2) G-P(sol) polarization free energy of solvation -77.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds