Wall clock time and date at job start Tue Mar 31 2020 17:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46564 * 2 1 4 4 N 1.46497 * 109.46927 * 119.99967 * 2 1 3 5 5 C 1.46503 * 120.00179 * 304.44724 * 4 2 1 6 6 C 1.50698 * 109.47112 * 263.60779 * 5 4 2 7 7 H 1.08000 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00253 * 179.97438 * 8 6 5 10 10 Si 1.86811 * 119.99716 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46992 * 89.99791 * 10 8 6 12 12 H 1.48497 * 109.46746 * 209.99679 * 10 8 6 13 13 H 1.48496 * 109.46667 * 329.99538 * 10 8 6 14 14 C 1.34776 * 119.99659 * 124.45457 * 4 2 1 15 15 O 1.21361 * 120.00040 * 354.60931 * 14 4 2 16 16 C 1.49353 * 119.99901 * 174.61252 * 14 4 2 17 17 O 1.21373 * 119.99841 * 0.61572 * 16 14 4 18 18 N 1.34778 * 120.00251 * 180.61720 * 16 14 4 19 19 C 1.39751 * 120.00287 * 184.86495 * 18 16 14 20 20 C 1.39010 * 119.98184 * 324.57718 * 19 18 16 21 21 C 1.38415 * 120.20297 * 180.02562 * 20 19 18 22 22 F 1.35100 * 119.90707 * 180.02562 * 21 20 19 23 23 C 1.38261 * 120.18304 * 359.97438 * 21 20 19 24 24 C 1.39623 * 119.96952 * 359.97438 * 23 21 20 25 25 C 1.43203 * 120.09748 * 180.02562 * 24 23 21 26 26 N 9.36905 * 138.36573 * 237.47478 * 4 1 2 27 27 C 1.38649 * 119.99019 * 144.55403 * 19 18 16 28 28 H 1.08995 * 109.46969 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.47263 * 60.00656 * 1 2 3 30 30 H 1.09006 * 109.46472 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46969 * 240.00411 * 2 1 3 32 32 H 1.09003 * 109.46938 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47506 * 299.99835 * 3 2 1 34 34 H 1.09001 * 109.47548 * 59.99958 * 3 2 1 35 35 H 1.09000 * 109.46677 * 23.60463 * 5 4 2 36 36 H 1.08999 * 109.46990 * 143.60710 * 5 4 2 37 37 H 0.97002 * 120.00293 * 180.02562 * 9 8 6 38 38 H 0.96997 * 119.99624 * 4.85749 * 18 16 14 39 39 H 1.07996 * 119.90236 * 359.71920 * 20 19 18 40 40 H 1.07998 * 120.01215 * 179.97438 * 23 21 20 41 41 H 1.08002 * 120.09031 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5859 -0.2494 2.5246 6 6 2.6232 0.6739 3.1096 7 1 3.5156 0.9084 2.5483 8 6 2.4331 1.2195 4.3615 9 7 3.3386 2.0249 4.8723 10 14 0.8899 0.8134 5.3327 11 1 1.1326 -0.3910 6.1669 12 1 0.5405 1.9602 6.2090 13 1 -0.2300 0.5481 4.3943 14 6 2.8655 -1.7317 1.0745 15 8 3.1472 -2.1595 -0.0258 16 6 3.4577 -2.3591 2.2937 17 8 3.1672 -1.9385 3.3946 18 7 4.3145 -3.3922 2.1715 19 6 4.7895 -4.0448 3.3124 20 6 5.0362 -3.3221 4.4740 21 6 5.5072 -3.9638 5.6064 22 9 5.7445 -3.2557 6.7323 23 6 5.7345 -5.3275 5.5888 24 6 5.4882 -6.0607 4.4265 25 6 5.7222 -7.4733 4.4054 26 7 5.9071 -8.5940 4.3888 27 6 5.0140 -5.4127 3.2854 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6358 0.2782 2.4407 36 1 1.4640 -1.1166 3.1735 37 1 3.2050 2.4084 5.7532 38 1 4.6014 -3.6828 1.2917 39 1 4.8646 -2.2561 4.4915 40 1 6.1024 -5.8252 6.4739 41 1 4.8219 -5.9753 2.3837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602031950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:33 Heat of formation + Delta-G solvation = -34.164391 kcal Electronic energy + Delta-G solvation = -28528.164218 eV Core-core repulsion = 24324.080179 eV Total energy + Delta-G solvation = -4204.084040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.92111 -40.90868 -39.55178 -38.15162 -36.67261 -36.34017 -34.65220 -32.81148 -31.52632 -31.21221 -30.03719 -27.97092 -26.84520 -25.25783 -24.40355 -22.70223 -22.49755 -21.05306 -19.25418 -19.08233 -17.46956 -17.04482 -16.93281 -16.64899 -16.40560 -16.13240 -15.69715 -15.60104 -15.31512 -14.79070 -14.27281 -14.09986 -13.86715 -13.75401 -13.66107 -13.45319 -13.38340 -12.88887 -12.62092 -12.56665 -12.32175 -12.21898 -12.12334 -11.90029 -11.78707 -11.70770 -11.20353 -11.01424 -10.77594 -10.57689 -10.44427 -10.33868 -10.15301 -9.53757 -9.08191 -8.84919 -8.57446 -8.44394 -8.01637 -6.11691 -4.08825 0.43874 0.81428 1.84938 2.31452 2.52848 2.69703 3.26776 3.31438 3.35711 3.43833 3.47441 3.68540 3.80415 4.20442 4.37418 4.66853 4.70551 4.71068 4.92457 5.12088 5.21040 5.26361 5.42424 5.43806 5.59087 5.78024 5.83708 5.90212 5.97015 6.03657 6.13355 6.18974 6.23117 6.47074 6.47321 6.67559 6.82936 6.87467 7.00157 7.16699 7.23380 7.51089 7.78753 8.02496 8.35453 8.48633 8.88533 9.48710 11.01163 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004190 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.790363 B = 6681.297274 C = 8386.787240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.548 5.548 5 C 0.196 3.804 6 C -0.512 4.512 7 H 0.074 0.926 8 C 0.082 3.918 9 N -0.895 5.895 10 Si 0.869 3.131 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.512 3.488 15 O -0.555 6.555 16 C 0.494 3.506 17 O -0.432 6.432 18 N -0.660 5.660 19 C 0.187 3.813 20 C -0.128 4.128 21 C 0.126 3.874 22 F -0.126 7.126 23 C -0.128 4.128 24 C 0.015 3.985 25 C 0.262 3.738 26 N -0.413 5.413 27 C -0.110 4.110 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.423 0.577 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -9.918 -4.672 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.213 4.213 4 N -0.278 5.278 5 C 0.076 3.924 6 C -0.550 4.550 7 H 0.092 0.908 8 C -0.121 4.121 9 N -0.533 5.533 10 Si 0.697 3.303 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.193 1.193 14 C 0.295 3.705 15 O -0.436 6.436 16 C 0.276 3.724 17 O -0.299 6.299 18 N -0.309 5.309 19 C 0.091 3.909 20 C -0.149 4.149 21 C 0.106 3.894 22 F -0.104 7.104 23 C -0.150 4.150 24 C 0.010 3.990 25 C -0.053 4.053 26 N -0.088 5.088 27 C -0.133 4.133 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.261 0.739 39 H 0.188 0.812 40 H 0.163 0.837 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.642 -11.312 -4.287 12.114 hybrid contribution -0.590 0.433 0.582 0.935 sum 0.052 -10.879 -3.705 11.492 Atomic orbital electron populations 1.22151 0.95053 1.02012 1.02637 1.21096 0.93997 0.93867 0.88043 1.22093 1.01776 0.95013 1.02424 1.48032 1.41751 1.28215 1.09785 1.20322 0.96616 0.97282 0.78219 1.21051 1.05837 1.26131 1.02029 0.90828 1.24706 0.96065 0.94455 0.96871 1.69871 1.34401 1.31651 1.17412 0.86963 0.84075 0.78416 0.80869 1.19789 1.21357 1.19279 1.19578 0.80903 0.81904 0.88160 1.90671 1.62163 1.63698 1.27102 1.20479 0.80388 0.80461 0.91091 1.90944 1.55671 1.56479 1.26789 1.43211 1.45732 1.33334 1.08620 1.17116 0.95997 0.90040 0.87714 1.21774 0.98114 1.03756 0.91280 1.17139 1.00061 0.88924 0.83319 1.91574 1.91860 1.78309 1.48700 1.21017 1.03002 0.92387 0.98577 1.15209 1.04426 0.84835 0.94486 1.25423 0.93730 0.92337 0.93843 1.81266 1.08568 1.11752 1.07230 1.20904 1.01701 0.92235 0.98489 0.91494 0.91625 0.92695 0.88912 0.92452 0.92663 0.90315 0.94826 0.92781 0.92602 0.73926 0.81242 0.83722 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.10 37.16 0.34 -1.84 16 2 C 0.13 2.13 3.25 -67.93 -0.22 1.91 16 3 C -0.16 -2.49 8.91 37.16 0.33 -2.16 16 4 N -0.55 -10.31 2.38 -168.01 -0.40 -10.71 16 5 C 0.20 4.18 3.18 -5.19 -0.02 4.17 16 6 C -0.51 -12.95 7.37 -34.44 -0.25 -13.20 16 7 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 10 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 14 C 0.51 9.37 7.67 -11.63 -0.09 9.28 16 15 O -0.56 -10.14 15.82 5.49 0.09 -10.05 16 16 C 0.49 8.57 7.57 -11.63 -0.09 8.48 16 17 O -0.43 -8.80 9.56 5.48 0.05 -8.75 16 18 N -0.66 -8.70 5.31 -10.34 -0.05 -8.76 16 19 C 0.19 2.30 6.28 -83.81 -0.53 1.77 16 20 C -0.13 -1.82 8.66 -39.23 -0.34 -2.16 16 21 C 0.13 1.59 7.29 -39.51 -0.29 1.31 16 22 F -0.13 -1.80 17.26 2.25 0.04 -1.76 16 23 C -0.13 -1.27 9.73 -39.06 -0.38 -1.65 16 24 C 0.01 0.14 5.73 -106.97 -0.61 -0.47 16 25 C 0.26 2.75 15.33 -22.47 -0.34 2.41 16 26 N -0.41 -5.18 18.54 41.83 0.78 -4.40 16 27 C -0.11 -1.05 9.67 -38.95 -0.38 -1.42 16 28 H 0.07 0.97 6.51 -51.93 -0.34 0.64 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.43 7.27 -51.93 -0.38 1.05 16 35 H 0.03 0.71 5.26 -51.93 -0.27 0.44 16 36 H 0.05 1.20 5.26 -51.93 -0.27 0.93 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.42 4.57 8.30 -40.82 -0.34 4.23 16 39 H 0.17 2.99 6.24 -52.49 -0.33 2.66 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -30.00 357.06 -5.39 -35.39 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.41 Total: 4.49 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.96 Total: 8.51 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 1.10 Total: -48.87 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.14 Total: -18.79 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.00 -5.39 -35.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602031950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.228 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds