Wall clock time and date at job start Tue Mar 31 2020 17:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46564 * 2 1 4 4 N 1.46497 * 109.46927 * 119.99967 * 2 1 3 5 5 C 1.46503 * 120.00179 * 304.44724 * 4 2 1 6 6 C 1.50698 * 109.47112 * 263.60779 * 5 4 2 7 7 H 1.08000 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00253 * 179.97438 * 8 6 5 10 10 Si 1.86811 * 119.99716 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46992 * 89.99791 * 10 8 6 12 12 H 1.48497 * 109.46746 * 209.99679 * 10 8 6 13 13 H 1.48496 * 109.46667 * 329.99538 * 10 8 6 14 14 C 1.34776 * 119.99659 * 124.45457 * 4 2 1 15 15 O 1.21361 * 120.00040 * 354.60931 * 14 4 2 16 16 C 1.49353 * 119.99901 * 174.61252 * 14 4 2 17 17 O 1.21373 * 119.99841 * 0.61572 * 16 14 4 18 18 N 1.34778 * 120.00251 * 180.61720 * 16 14 4 19 19 C 1.39751 * 120.00287 * 184.86495 * 18 16 14 20 20 C 1.39010 * 119.98184 * 324.57718 * 19 18 16 21 21 C 1.38415 * 120.20297 * 180.02562 * 20 19 18 22 22 F 1.35100 * 119.90707 * 180.02562 * 21 20 19 23 23 C 1.38261 * 120.18304 * 359.97438 * 21 20 19 24 24 C 1.39623 * 119.96952 * 359.97438 * 23 21 20 25 25 C 1.43203 * 120.09748 * 180.02562 * 24 23 21 26 26 N 9.36905 * 138.36573 * 237.47478 * 4 1 2 27 27 C 1.38649 * 119.99019 * 144.55403 * 19 18 16 28 28 H 1.08995 * 109.46969 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.47263 * 60.00656 * 1 2 3 30 30 H 1.09006 * 109.46472 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46969 * 240.00411 * 2 1 3 32 32 H 1.09003 * 109.46938 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47506 * 299.99835 * 3 2 1 34 34 H 1.09001 * 109.47548 * 59.99958 * 3 2 1 35 35 H 1.09000 * 109.46677 * 23.60463 * 5 4 2 36 36 H 1.08999 * 109.46990 * 143.60710 * 5 4 2 37 37 H 0.97002 * 120.00293 * 180.02562 * 9 8 6 38 38 H 0.96997 * 119.99624 * 4.85749 * 18 16 14 39 39 H 1.07996 * 119.90236 * 359.71920 * 20 19 18 40 40 H 1.07998 * 120.01215 * 179.97438 * 23 21 20 41 41 H 1.08002 * 120.09031 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5859 -0.2494 2.5246 6 6 2.6232 0.6739 3.1096 7 1 3.5156 0.9084 2.5483 8 6 2.4331 1.2195 4.3615 9 7 3.3386 2.0249 4.8723 10 14 0.8899 0.8134 5.3327 11 1 1.1326 -0.3910 6.1669 12 1 0.5405 1.9602 6.2090 13 1 -0.2300 0.5481 4.3943 14 6 2.8655 -1.7317 1.0745 15 8 3.1472 -2.1595 -0.0258 16 6 3.4577 -2.3591 2.2937 17 8 3.1672 -1.9385 3.3946 18 7 4.3145 -3.3922 2.1715 19 6 4.7895 -4.0448 3.3124 20 6 5.0362 -3.3221 4.4740 21 6 5.5072 -3.9638 5.6064 22 9 5.7445 -3.2557 6.7323 23 6 5.7345 -5.3275 5.5888 24 6 5.4882 -6.0607 4.4265 25 6 5.7222 -7.4733 4.4054 26 7 5.9071 -8.5940 4.3888 27 6 5.0140 -5.4127 3.2854 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6358 0.2782 2.4407 36 1 1.4640 -1.1166 3.1735 37 1 3.2050 2.4084 5.7532 38 1 4.6014 -3.6828 1.2917 39 1 4.8646 -2.2561 4.4915 40 1 6.1024 -5.8252 6.4739 41 1 4.8219 -5.9753 2.3837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602031950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:32 Heat of formation + Delta-G solvation = -52.724453 kcal Electronic energy + Delta-G solvation = -28528.969043 eV Core-core repulsion = 24324.080179 eV Total energy + Delta-G solvation = -4204.888864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.98913 -42.20283 -40.73961 -39.39522 -37.90992 -37.53967 -35.81487 -34.71729 -33.03974 -32.20391 -31.06325 -29.78624 -28.04578 -26.52530 -25.41583 -24.51648 -23.57424 -22.27884 -20.48223 -20.25557 -19.02531 -18.88034 -18.20389 -17.69842 -17.50331 -17.21225 -16.93401 -16.71006 -16.67685 -16.15936 -15.97258 -15.23284 -15.11252 -14.95873 -14.89942 -14.72222 -14.45467 -14.33148 -13.95608 -13.90824 -13.68189 -13.37188 -13.31056 -13.05459 -12.99013 -12.94449 -12.71646 -12.55485 -12.31996 -12.14516 -11.92497 -11.69561 -11.52069 -11.47124 -10.70765 -10.31279 -9.97275 -9.62716 -9.42700 -8.19077 -6.18150 -0.50765 -0.16108 0.49540 1.23335 1.39344 1.43848 1.47942 1.52526 1.72373 2.20842 2.38482 2.41375 2.62811 2.66060 3.15796 3.19201 3.39086 3.83361 3.86922 3.93557 4.00058 4.08953 4.22525 4.39220 4.50157 4.56685 4.83357 4.84480 4.86843 4.91428 4.95869 4.99916 5.01548 5.08103 5.18792 5.36986 5.46814 5.51103 5.58055 5.65537 6.02772 6.16510 6.32347 6.42826 6.73882 6.78220 7.01714 7.42380 8.97397 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004190 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.790363 B = 6681.297274 C = 8386.787240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 C -0.148 4.148 4 N -0.556 5.556 5 C 0.209 3.791 6 C -0.492 4.492 7 H 0.031 0.969 8 C 0.025 3.975 9 N -0.947 5.947 10 Si 0.926 3.074 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.238 1.238 14 C 0.508 3.492 15 O -0.553 6.553 16 C 0.493 3.507 17 O -0.471 6.471 18 N -0.641 5.641 19 C 0.173 3.827 20 C -0.144 4.144 21 C 0.109 3.891 22 F -0.141 7.141 23 C -0.102 4.102 24 C 0.024 3.976 25 C 0.288 3.712 26 N -0.441 5.441 27 C -0.079 4.079 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.262 0.738 38 H 0.435 0.565 39 H 0.128 0.872 40 H 0.171 0.829 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -12.444 -5.952 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 C -0.206 4.206 4 N -0.287 5.287 5 C 0.088 3.912 6 C -0.530 4.530 7 H 0.049 0.951 8 C -0.173 4.173 9 N -0.588 5.588 10 Si 0.751 3.249 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.161 1.161 14 C 0.291 3.709 15 O -0.434 6.434 16 C 0.275 3.725 17 O -0.341 6.341 18 N -0.291 5.291 19 C 0.078 3.922 20 C -0.166 4.166 21 C 0.089 3.911 22 F -0.119 7.119 23 C -0.123 4.123 24 C 0.020 3.980 25 C -0.028 4.028 26 N -0.116 5.116 27 C -0.101 4.101 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.276 0.724 39 H 0.146 0.854 40 H 0.189 0.811 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.670 -13.881 -5.627 14.993 hybrid contribution -0.031 1.145 0.878 1.443 sum -0.701 -12.736 -4.749 13.611 Atomic orbital electron populations 1.22112 0.92645 1.02753 1.03618 1.21371 0.95944 0.93239 0.87066 1.22033 1.00189 0.95528 1.02880 1.48088 1.42242 1.28679 1.09657 1.19986 0.95543 0.96249 0.79441 1.21134 1.04941 1.25681 1.01269 0.95081 1.25466 0.99069 0.94596 0.98137 1.70024 1.36891 1.33946 1.17945 0.86040 0.81456 0.77620 0.79787 1.20407 1.21482 1.16106 1.19801 0.80661 0.81899 0.88560 1.90657 1.61977 1.63712 1.27080 1.20445 0.80762 0.81033 0.90231 1.90939 1.57472 1.57992 1.27744 1.42978 1.44353 1.32022 1.09716 1.17111 0.97351 0.90977 0.86729 1.21537 0.99823 1.02156 0.93120 1.17211 1.01416 0.89910 0.82521 1.91535 1.92163 1.78895 1.49353 1.21187 1.00689 0.90870 0.99591 1.15105 1.04126 0.84421 0.94315 1.25177 0.92783 0.91868 0.92927 1.81322 1.09550 1.12620 1.08153 1.21106 0.98784 0.90709 0.99539 0.92552 0.88562 0.92057 0.88208 0.94841 0.89041 0.92909 0.93597 0.92931 0.92916 0.72380 0.85407 0.81104 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.10 71.98 0.66 -3.11 16 2 C 0.13 3.86 3.25 44.99 0.15 4.01 16 3 C -0.15 -4.71 8.91 71.98 0.64 -4.06 16 4 N -0.56 -20.82 2.38 -803.83 -1.91 -22.73 16 5 C 0.21 8.96 3.18 85.63 0.27 9.24 16 6 C -0.49 -25.85 7.37 25.60 0.19 -25.66 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.02 1.38 5.47 84.66 0.46 1.84 16 9 N -0.95 -57.28 13.96 21.45 0.30 -56.98 16 10 Si 0.93 42.45 27.47 68.60 1.88 44.33 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 14 C 0.51 18.46 7.67 87.24 0.67 19.13 16 15 O -0.55 -19.51 15.82 -3.28 -0.05 -19.56 16 16 C 0.49 17.31 7.57 87.24 0.66 17.97 16 17 O -0.47 -19.91 9.56 -3.32 -0.03 -19.95 16 18 N -0.64 -16.41 5.31 -304.97 -1.62 -18.03 16 19 C 0.17 4.07 6.28 38.16 0.24 4.31 16 20 C -0.14 -4.24 8.66 22.50 0.19 -4.04 16 21 C 0.11 2.76 7.29 22.32 0.16 2.92 16 22 F -0.14 -4.15 17.26 44.97 0.78 -3.37 16 23 C -0.10 -1.79 9.73 22.61 0.22 -1.57 16 24 C 0.02 0.39 5.73 -21.39 -0.12 0.27 16 25 C 0.29 5.04 15.33 88.33 1.35 6.39 16 26 N -0.44 -9.79 18.54 19.00 0.35 -9.44 16 27 C -0.08 -1.24 9.67 22.68 0.22 -1.03 16 28 H 0.06 1.51 6.51 -2.39 -0.02 1.49 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.10 2.95 6.91 -2.39 -0.02 2.94 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.94 7.27 -2.39 -0.02 1.92 16 35 H 0.05 1.88 5.26 -2.39 -0.01 1.87 16 36 H 0.05 2.34 5.26 -2.39 -0.01 2.32 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.44 8.66 8.30 -92.71 -0.77 7.89 16 39 H 0.13 4.93 6.24 -2.91 -0.02 4.91 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -69.06 357.06 5.95 -63.11 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.28 Total: 16.01 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 5.96 Total: 26.61 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -2.88 Total: -107.18 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.08 Total: -39.51 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Total: -69.06 5.95 -63.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602031950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.385 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds