Wall clock time and date at job start Tue Mar 31 2020 17:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30273 * 126.27706 * 2 1 4 4 N 1.28666 * 109.38328 * 179.97438 * 3 2 1 5 5 C 1.30278 * 109.37837 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.28493 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47420 * 90.02126 * 6 5 4 8 8 C 1.50696 * 109.47208 * 180.02562 * 7 6 5 9 9 O 1.21291 * 120.00300 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99977 * 4.73670 * 10 8 7 12 12 C 1.50698 * 109.46833 * 269.72510 * 11 10 8 13 13 H 1.08008 * 120.00152 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00427 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99531 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47035 * 90.00147 * 16 14 12 18 18 H 1.48499 * 109.47063 * 209.99629 * 16 14 12 19 19 H 1.48493 * 109.47410 * 329.99735 * 16 14 12 20 20 C 1.40031 * 120.00256 * 184.45838 * 10 8 7 21 21 C 1.38852 * 120.04542 * 247.88432 * 20 10 8 22 22 C 1.38112 * 119.95284 * 179.71873 * 21 20 10 23 23 C 1.38476 * 120.04541 * 0.55399 * 22 21 20 24 24 F 1.35094 * 119.95504 * 179.69983 * 23 22 21 25 25 C 1.38474 * 120.08895 * 359.72333 * 23 22 21 26 26 C 1.38115 * 120.04605 * 359.97438 * 25 23 22 27 27 O 1.34355 * 126.28747 * 180.28110 * 2 1 3 28 28 H 1.09000 * 109.46501 * 89.98053 * 1 2 3 29 29 H 1.09000 * 109.46931 * 209.97724 * 1 2 3 30 30 H 1.09000 * 109.47536 * 329.97746 * 1 2 3 31 31 H 1.09006 * 109.47232 * 330.02284 * 6 5 4 32 32 H 1.09004 * 109.47573 * 210.02197 * 6 5 4 33 33 H 1.08992 * 109.46842 * 59.99842 * 7 6 5 34 34 H 1.09001 * 109.46537 * 300.00102 * 7 6 5 35 35 H 1.09002 * 109.46942 * 29.72187 * 11 10 8 36 36 H 1.08999 * 109.47184 * 149.72374 * 11 10 8 37 37 H 0.96995 * 119.99845 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.01937 * 0.02562 * 21 20 10 39 39 H 1.07999 * 119.97359 * 180.25545 * 22 21 20 40 40 H 1.08003 * 119.97676 * 179.97438 * 25 23 22 41 41 H 1.08002 * 120.02330 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5090 0.6763 0.0005 5 6 3.5655 -0.6252 0.0004 6 6 4.8177 -1.4635 0.0003 7 6 5.2412 -1.7479 1.4428 8 6 6.4938 -2.5857 1.4427 9 8 6.9980 -2.9227 0.3922 10 7 7.0533 -2.9615 2.6098 11 6 6.3886 -2.6447 3.8763 12 6 6.8685 -1.3057 4.3742 13 1 7.5962 -0.7468 3.8044 14 6 6.3786 -0.7940 5.5571 15 7 6.7978 0.3743 5.9919 16 14 5.1206 -1.7610 6.5429 17 1 5.8218 -2.6481 7.5056 18 1 4.2440 -0.8198 7.2853 19 1 4.2960 -2.5835 5.6219 20 6 8.2670 -3.6599 2.6117 21 6 8.3052 -4.9864 3.0202 22 6 9.5024 -5.6751 3.0158 23 6 10.6660 -5.0403 2.6152 24 9 11.8370 -5.7139 2.6174 25 6 10.6310 -3.7157 2.2129 26 6 9.4348 -3.0253 2.2099 27 8 2.3022 -1.0830 -0.0053 28 1 -0.3632 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 5.6149 -0.9258 -0.5131 32 1 4.6247 -2.4050 -0.5140 33 1 4.4441 -2.2856 1.9561 34 1 5.4342 -0.8065 1.9570 35 1 5.3102 -2.6096 3.7218 36 1 6.6254 -3.4124 4.6130 37 1 6.4529 0.7343 6.8238 38 1 7.3985 -5.4807 3.3365 39 1 9.5317 -6.7081 3.3296 40 1 11.5397 -3.2223 1.9012 41 1 9.4080 -1.9921 1.8964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602094725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:32 Heat of formation + Delta-G solvation = -13.960202 kcal Electronic energy + Delta-G solvation = -27763.093119 eV Core-core repulsion = 23559.885199 eV Total energy + Delta-G solvation = -4203.207920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.70884 -44.19709 -40.17810 -38.16043 -36.13136 -35.29511 -34.42056 -32.68518 -32.10691 -30.96406 -29.74756 -28.27459 -27.60041 -25.34494 -23.20268 -22.81453 -22.50622 -22.37084 -21.56003 -19.05164 -17.59911 -17.42450 -17.27092 -17.21053 -16.75963 -16.29152 -16.03822 -15.39018 -15.33029 -14.72365 -14.60332 -14.31992 -14.14088 -13.69725 -13.43297 -13.37529 -13.33892 -13.00379 -12.81799 -12.75819 -12.40706 -12.30303 -12.23601 -12.09942 -11.83194 -11.79617 -11.30450 -11.20570 -10.92837 -10.82468 -10.80519 -10.44267 -9.78357 -9.64096 -9.37965 -8.90581 -8.82805 -8.71744 -7.85765 -6.31555 -4.35165 1.13564 1.32021 1.45595 2.22627 2.40695 2.95194 3.08904 3.14054 3.18199 3.41439 3.79287 3.84061 4.16029 4.35883 4.45133 4.74499 4.90221 4.94991 4.97319 5.01002 5.01617 5.06573 5.16087 5.29983 5.41141 5.43936 5.44955 5.58873 5.66399 5.72038 5.74411 5.93416 6.06877 6.15878 6.27453 6.32316 6.39011 6.41072 6.68559 6.87197 7.26179 7.30574 7.76050 8.22019 8.33940 8.55181 8.73301 9.25474 10.80685 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.003653 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.460459 B = 7663.063164 C = 9534.265025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.151 3.849 3 N -0.288 5.288 4 N -0.281 5.281 5 C 0.175 3.825 6 C -0.008 4.008 7 C -0.136 4.136 8 C 0.531 3.469 9 O -0.552 6.552 10 N -0.554 5.554 11 C 0.209 3.791 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.081 3.919 15 N -0.883 5.883 16 Si 0.868 3.132 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.163 3.837 21 C -0.098 4.098 22 C -0.145 4.145 23 C 0.083 3.917 24 F -0.146 7.146 25 C -0.143 4.143 26 C -0.073 4.073 27 O -0.226 6.226 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -8.152 -8.645 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 N -0.135 5.135 4 N -0.127 5.127 5 C -0.036 4.036 6 C -0.047 4.047 7 C -0.176 4.176 8 C 0.320 3.680 9 O -0.431 6.431 10 N -0.281 5.281 11 C 0.089 3.911 12 C -0.585 4.585 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.520 5.520 16 Si 0.694 3.306 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.189 1.189 20 C 0.072 3.928 21 C -0.118 4.118 22 C -0.165 4.165 23 C 0.064 3.936 24 F -0.124 7.124 25 C -0.162 4.162 26 C -0.092 4.092 27 O -0.106 6.106 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.381 -6.941 -9.023 13.050 hybrid contribution -0.825 -1.549 1.000 2.020 sum -7.206 -8.491 -8.023 13.726 Atomic orbital electron populations 1.20313 0.80390 1.05669 1.04965 1.27971 0.97818 0.79847 1.00381 1.74393 0.96216 1.25708 1.17207 1.74450 1.11914 1.09230 1.17104 1.28073 0.85065 0.91686 0.98778 1.19983 0.87320 0.98656 0.98722 1.21647 0.96526 1.03326 0.96100 1.20265 0.85620 0.79245 0.82846 1.90675 1.65005 1.56466 1.30977 1.45596 1.20231 1.54044 1.08208 1.20010 0.93078 0.97828 0.80196 1.21266 1.27178 1.02066 1.07977 0.90048 1.24839 0.96004 0.94701 0.96876 1.69869 1.42827 1.17410 1.21874 0.86981 0.82039 0.80424 0.81118 1.19715 1.20688 1.18945 1.17559 0.86144 0.90410 0.98688 1.21035 0.97841 0.92935 0.99973 1.20873 0.91284 1.00824 1.03495 1.17643 0.81352 0.91082 1.03560 1.91460 1.46170 1.80227 1.94579 1.20969 0.99275 0.92949 1.02998 1.21145 0.90521 1.00071 0.97481 1.84770 1.17711 1.38339 1.69782 0.88544 0.88975 0.87615 0.86224 0.87939 0.88493 0.85908 0.94276 0.94776 0.92151 0.85028 0.84802 0.84709 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.00 16 2 C 0.15 1.91 8.48 -12.94 -0.11 1.80 16 3 N -0.29 -4.64 12.22 32.55 0.40 -4.25 16 4 N -0.28 -4.88 12.22 32.55 0.40 -4.48 16 5 C 0.17 2.63 7.73 -12.94 -0.10 2.53 16 6 C -0.01 -0.11 5.13 -27.88 -0.14 -0.25 16 7 C -0.14 -2.13 4.34 -27.88 -0.12 -2.25 16 8 C 0.53 9.54 7.53 -10.99 -0.08 9.46 16 9 O -0.55 -10.66 15.74 5.55 0.09 -10.57 16 10 N -0.55 -10.45 2.51 -114.72 -0.29 -10.74 16 11 C 0.21 4.27 3.95 -5.19 -0.02 4.25 16 12 C -0.55 -13.62 9.74 -34.44 -0.34 -13.96 16 13 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.88 -25.02 13.96 55.43 0.77 -24.24 16 16 Si 0.87 19.06 27.47 -169.99 -4.67 14.39 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 20 C 0.16 2.94 4.75 -83.66 -0.40 2.54 16 21 C -0.10 -1.53 9.67 -39.40 -0.38 -1.91 16 22 C -0.15 -2.05 10.02 -39.54 -0.40 -2.45 16 23 C 0.08 1.24 7.30 -39.41 -0.29 0.95 16 24 F -0.15 -2.12 17.26 2.25 0.04 -2.08 16 25 C -0.14 -2.17 10.02 -39.54 -0.40 -2.57 16 26 C -0.07 -1.26 9.56 -39.40 -0.38 -1.64 16 27 O -0.23 -3.11 10.87 5.40 0.06 -3.05 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.63 8.10 -51.93 -0.42 1.21 16 32 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.10 1.40 7.26 -51.93 -0.38 1.02 16 34 H 0.12 2.19 7.94 -51.93 -0.41 1.77 16 35 H 0.04 0.76 5.52 -51.93 -0.29 0.47 16 36 H 0.03 0.69 7.28 -51.93 -0.38 0.31 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -31.74 364.44 -5.42 -37.17 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.84 Total: 3.85 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.87 Total: -1.48 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 1.28 Total: -43.71 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.15 Total: -13.62 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.74 -5.42 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.205 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds