Wall clock time and date at job start Tue Mar 31 2020 17:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30273 * 126.27706 * 2 1 4 4 N 1.28666 * 109.38328 * 179.97438 * 3 2 1 5 5 C 1.30278 * 109.37837 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.28493 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47420 * 90.02126 * 6 5 4 8 8 C 1.50696 * 109.47208 * 180.02562 * 7 6 5 9 9 O 1.21291 * 120.00300 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99977 * 4.73670 * 10 8 7 12 12 C 1.50698 * 109.46833 * 269.72510 * 11 10 8 13 13 H 1.08008 * 120.00152 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00427 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99531 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47035 * 90.00147 * 16 14 12 18 18 H 1.48499 * 109.47063 * 209.99629 * 16 14 12 19 19 H 1.48493 * 109.47410 * 329.99735 * 16 14 12 20 20 C 1.40031 * 120.00256 * 184.45838 * 10 8 7 21 21 C 1.38852 * 120.04542 * 247.88432 * 20 10 8 22 22 C 1.38112 * 119.95284 * 179.71873 * 21 20 10 23 23 C 1.38476 * 120.04541 * 0.55399 * 22 21 20 24 24 F 1.35094 * 119.95504 * 179.69983 * 23 22 21 25 25 C 1.38474 * 120.08895 * 359.72333 * 23 22 21 26 26 C 1.38115 * 120.04605 * 359.97438 * 25 23 22 27 27 O 1.34355 * 126.28747 * 180.28110 * 2 1 3 28 28 H 1.09000 * 109.46501 * 89.98053 * 1 2 3 29 29 H 1.09000 * 109.46931 * 209.97724 * 1 2 3 30 30 H 1.09000 * 109.47536 * 329.97746 * 1 2 3 31 31 H 1.09006 * 109.47232 * 330.02284 * 6 5 4 32 32 H 1.09004 * 109.47573 * 210.02197 * 6 5 4 33 33 H 1.08992 * 109.46842 * 59.99842 * 7 6 5 34 34 H 1.09001 * 109.46537 * 300.00102 * 7 6 5 35 35 H 1.09002 * 109.46942 * 29.72187 * 11 10 8 36 36 H 1.08999 * 109.47184 * 149.72374 * 11 10 8 37 37 H 0.96995 * 119.99845 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.01937 * 0.02562 * 21 20 10 39 39 H 1.07999 * 119.97359 * 180.25545 * 22 21 20 40 40 H 1.08003 * 119.97676 * 179.97438 * 25 23 22 41 41 H 1.08002 * 120.02330 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5090 0.6763 0.0005 5 6 3.5655 -0.6252 0.0004 6 6 4.8177 -1.4635 0.0003 7 6 5.2412 -1.7479 1.4428 8 6 6.4938 -2.5857 1.4427 9 8 6.9980 -2.9227 0.3922 10 7 7.0533 -2.9615 2.6098 11 6 6.3886 -2.6447 3.8763 12 6 6.8685 -1.3057 4.3742 13 1 7.5962 -0.7468 3.8044 14 6 6.3786 -0.7940 5.5571 15 7 6.7978 0.3743 5.9919 16 14 5.1206 -1.7610 6.5429 17 1 5.8218 -2.6481 7.5056 18 1 4.2440 -0.8198 7.2853 19 1 4.2960 -2.5835 5.6219 20 6 8.2670 -3.6599 2.6117 21 6 8.3052 -4.9864 3.0202 22 6 9.5024 -5.6751 3.0158 23 6 10.6660 -5.0403 2.6152 24 9 11.8370 -5.7139 2.6174 25 6 10.6310 -3.7157 2.2129 26 6 9.4348 -3.0253 2.2099 27 8 2.3022 -1.0830 -0.0053 28 1 -0.3632 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 5.6149 -0.9258 -0.5131 32 1 4.6247 -2.4050 -0.5140 33 1 4.4441 -2.2856 1.9561 34 1 5.4342 -0.8065 1.9570 35 1 5.3102 -2.6096 3.7218 36 1 6.6254 -3.4124 4.6130 37 1 6.4529 0.7343 6.8238 38 1 7.3985 -5.4807 3.3365 39 1 9.5317 -6.7081 3.3296 40 1 11.5397 -3.2223 1.9012 41 1 9.4080 -1.9921 1.8964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602094725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:31 Heat of formation + Delta-G solvation = -36.471497 kcal Electronic energy + Delta-G solvation = -27764.069282 eV Core-core repulsion = 23559.885199 eV Total energy + Delta-G solvation = -4204.184083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.88370 -45.29708 -41.56803 -39.45017 -37.25173 -36.80241 -35.58036 -34.57803 -33.06955 -32.17297 -31.12140 -29.62909 -28.90561 -26.55584 -24.75410 -23.99825 -23.82444 -23.53375 -22.75818 -20.41861 -19.15107 -18.83078 -18.60419 -18.40108 -17.96887 -17.70759 -17.39227 -16.57928 -16.55919 -16.14818 -15.84265 -15.56490 -15.41755 -14.83313 -14.64785 -14.63011 -14.53829 -14.07396 -14.03353 -13.88546 -13.66271 -13.55174 -13.50949 -13.30910 -13.22216 -12.96938 -12.91082 -12.55283 -12.39180 -12.19105 -11.99564 -11.93708 -11.72699 -11.05326 -10.79657 -10.53357 -10.13264 -10.10877 -9.24961 -8.31094 -6.39351 0.04671 0.09733 0.24508 1.19861 1.28219 1.38373 1.39067 1.47925 1.52456 2.05133 2.32320 2.54830 2.82915 3.03215 3.25226 3.40234 3.60734 3.76472 3.78006 3.86733 3.90502 4.11365 4.23413 4.26879 4.37162 4.38105 4.40516 4.56135 4.58715 4.71975 4.74441 4.79147 4.81558 4.90150 4.91550 5.06627 5.08915 5.13037 5.34306 5.43357 5.58685 5.93811 6.12785 6.41149 6.66793 7.10712 7.22875 7.26744 8.85019 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.003653 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.460459 B = 7663.063164 C = 9534.265025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.169 3.831 3 N -0.333 5.333 4 N -0.321 5.321 5 C 0.174 3.826 6 C 0.003 3.997 7 C -0.128 4.128 8 C 0.529 3.471 9 O -0.567 6.567 10 N -0.557 5.557 11 C 0.216 3.784 12 C -0.541 4.541 13 H 0.032 0.968 14 C 0.019 3.981 15 N -0.941 5.941 16 Si 0.935 3.065 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.228 1.228 20 C 0.131 3.869 21 C -0.098 4.098 22 C -0.133 4.133 23 C 0.081 3.919 24 F -0.141 7.141 25 C -0.143 4.143 26 C -0.096 4.096 27 O -0.225 6.225 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -11.529 -8.524 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 N -0.179 5.179 4 N -0.166 5.166 5 C -0.038 4.038 6 C -0.036 4.036 7 C -0.168 4.168 8 C 0.319 3.681 9 O -0.447 6.447 10 N -0.283 5.283 11 C 0.096 3.904 12 C -0.579 4.579 13 H 0.051 0.949 14 C -0.180 4.180 15 N -0.580 5.580 16 Si 0.757 3.243 17 H -0.189 1.189 18 H -0.215 1.215 19 H -0.151 1.151 20 C 0.040 3.960 21 C -0.117 4.117 22 C -0.152 4.152 23 C 0.061 3.939 24 F -0.120 7.120 25 C -0.162 4.162 26 C -0.116 4.116 27 O -0.105 6.105 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.170 0.830 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.570 -10.328 -8.932 16.121 hybrid contribution -0.064 -0.477 0.879 1.002 sum -8.633 -10.805 -8.053 16.004 Atomic orbital electron populations 1.20747 0.76110 1.07358 1.07138 1.29173 0.99573 0.78739 0.96761 1.74324 0.96227 1.27398 1.19989 1.74368 1.13192 1.10648 1.18429 1.28101 0.85831 0.91202 0.98712 1.19908 0.86820 0.99404 0.97486 1.21558 0.96134 1.01669 0.97454 1.20590 0.86004 0.78983 0.82480 1.90656 1.65592 1.57090 1.31324 1.45558 1.20642 1.54362 1.07775 1.19845 0.94040 0.95355 0.81191 1.21453 1.25546 1.03640 1.07283 0.94933 1.25785 0.98414 0.95592 0.98228 1.70052 1.45285 1.19969 1.22742 0.85907 0.79429 0.79096 0.79852 1.18889 1.21474 1.15090 1.17928 0.85784 0.91796 1.00495 1.21282 0.99358 0.91834 0.99241 1.21234 0.90139 1.02187 1.01641 1.17759 0.81918 0.90903 1.03296 1.91475 1.46021 1.80004 1.94509 1.21121 0.99136 0.93448 1.02536 1.21127 0.91721 0.99658 0.99114 1.84791 1.17246 1.38568 1.69925 0.85879 0.86567 0.86505 0.86824 0.85698 0.86526 0.88621 0.92184 0.93247 0.92357 0.82713 0.81289 0.83015 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.17 4.02 8.48 88.34 0.75 4.77 16 3 N -0.33 -10.78 12.22 -165.51 -2.02 -12.81 16 4 N -0.32 -11.43 12.22 -165.50 -2.02 -13.45 16 5 C 0.17 5.18 7.73 88.34 0.68 5.86 16 6 C 0.00 0.07 5.13 29.85 0.15 0.22 16 7 C -0.13 -3.99 4.34 29.85 0.13 -3.86 16 8 C 0.53 19.00 7.53 87.66 0.66 19.66 16 9 O -0.57 -21.90 15.74 -3.06 -0.05 -21.95 16 10 N -0.56 -20.83 2.51 -635.24 -1.59 -22.42 16 11 C 0.22 8.58 3.95 85.63 0.34 8.92 16 12 C -0.54 -27.68 9.74 25.60 0.25 -27.43 16 13 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 14 C 0.02 1.00 5.47 84.66 0.46 1.46 16 15 N -0.94 -55.55 13.96 21.45 0.30 -55.25 16 16 Si 0.93 38.35 27.47 68.60 1.88 40.24 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.23 -7.96 6.54 99.48 0.65 -7.31 16 20 C 0.13 4.65 4.75 38.12 0.18 4.84 16 21 C -0.10 -2.80 9.67 22.39 0.22 -2.58 16 22 C -0.13 -3.34 10.02 22.30 0.22 -3.11 16 23 C 0.08 2.25 7.30 22.38 0.16 2.41 16 24 F -0.14 -3.79 17.26 44.97 0.78 -3.02 16 25 C -0.14 -4.31 10.02 22.30 0.22 -4.09 16 26 C -0.10 -3.45 9.56 22.39 0.21 -3.23 16 27 O -0.23 -5.84 10.87 -3.59 -0.04 -5.88 16 28 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 3.20 8.10 -2.38 -0.02 3.18 16 32 H 0.12 2.82 8.10 -2.38 -0.02 2.80 16 33 H 0.12 3.14 7.26 -2.39 -0.02 3.12 16 34 H 0.10 3.56 7.94 -2.39 -0.02 3.54 16 35 H 0.06 2.16 5.52 -2.39 -0.01 2.15 16 36 H 0.05 1.85 7.28 -2.39 -0.02 1.83 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -72.90 364.44 3.64 -69.26 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.01 Total: 21.26 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.40 Total: 4.01 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -5.34 Total: -103.93 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.09 Total: -27.82 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.88 Total: 40.24 kcal Total: -72.90 3.64 -69.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.790 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds