Wall clock time and date at job start Tue Mar 31 2020 18:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46919 * 180.02562 * 14 13 12 16 16 O 1.21279 * 119.99969 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.38805 * 120.00071 * 180.02562 * 17 15 14 19 19 S 1.70091 * 124.59436 * 359.69320 * 18 17 15 20 20 C 1.76339 * 92.70864 * 179.97438 * 19 18 17 21 21 C 1.33072 * 110.72646 * 0.29735 * 20 19 18 22 22 C 1.36311 * 124.60184 * 179.97438 * 18 17 15 23 23 C 1.43200 * 123.32789 * 359.93972 * 22 18 17 24 24 N 9.51904 * 107.12200 * 257.93409 * 2 1 3 25 25 C 1.52605 * 110.21160 * 179.80792 * 21 20 19 26 26 C 1.54179 * 104.91994 * 342.52600 * 25 21 20 27 27 C 1.52387 * 138.82703 * 179.97438 * 20 19 18 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 33 33 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 34 34 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 35 35 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 36 36 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 37 37 H 0.97004 * 120.00390 * 359.97438 * 17 15 14 38 38 H 1.08996 * 110.35526 * 101.38531 * 25 21 20 39 39 H 1.09000 * 110.34976 * 223.66847 * 25 21 20 40 40 H 1.09007 * 110.99809 * 268.35699 * 26 25 21 41 41 H 1.08994 * 111.03080 * 144.54181 * 26 25 21 42 42 H 1.08997 * 110.35712 * 316.59230 * 27 20 19 43 43 H 1.08999 * 110.35579 * 78.77500 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6612 0.4064 -4.7512 16 8 2.3297 1.5658 -4.6210 17 7 3.0877 -0.0422 -5.9484 18 6 3.1480 0.8228 -7.0323 19 16 2.7065 2.4647 -6.9833 20 6 3.0940 2.7060 -8.6866 21 6 3.5278 1.5742 -9.2358 22 6 3.5640 0.4704 -8.2816 23 6 3.9939 -0.8520 -8.6239 24 7 4.3325 -1.9016 -8.8962 25 6 3.8550 1.7951 -10.7099 26 6 3.1385 3.1083 -11.0832 27 6 3.0745 3.8259 -9.7199 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 2.9172 -1.1204 -1.0288 33 1 1.0871 0.6165 -2.5525 34 1 2.7588 1.0464 -2.1181 35 1 3.5917 -0.9260 -3.3683 36 1 1.9201 -1.3564 -3.8032 37 1 3.3532 -0.9693 -6.0524 38 1 4.9313 1.8981 -10.8481 39 1 3.4720 0.9703 -11.3109 40 1 2.1378 2.9115 -11.4681 41 1 3.7243 3.6833 -11.8002 42 1 2.1528 4.4018 -9.6375 43 1 3.9398 4.4760 -9.5908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:00 Heat of formation + Delta-G solvation = 23.284552 kcal Electronic energy + Delta-G solvation = -24565.792905 eV Core-core repulsion = 20930.413214 eV Total energy + Delta-G solvation = -3635.379691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75241 -39.59769 -37.13175 -36.23697 -35.79144 -33.51944 -33.05277 -30.91097 -28.76761 -28.18724 -27.19958 -25.28412 -24.65216 -23.08179 -21.41674 -21.03098 -19.88537 -19.53388 -18.65037 -18.00032 -16.63226 -16.38545 -16.24263 -15.94272 -15.89625 -14.99675 -14.62621 -14.39483 -14.05733 -13.88463 -13.50859 -13.43089 -13.18126 -13.13759 -12.78344 -12.60084 -12.45248 -12.24548 -12.18735 -11.97229 -11.68482 -11.53861 -11.37497 -11.32861 -11.06044 -10.81592 -10.78054 -10.56757 -10.29351 -10.16780 -10.12520 -9.91550 -8.87340 -8.56874 -8.50589 -8.31431 -7.38770 -6.05388 -4.12489 0.40849 0.85555 1.60474 1.70250 2.20149 2.36829 2.47164 3.20902 3.28917 3.33806 3.36010 3.81937 4.03539 4.21829 4.34650 4.42856 4.61300 4.65210 4.97945 5.09505 5.12840 5.14760 5.25795 5.29520 5.36971 5.41966 5.53977 5.56274 5.62481 5.63935 5.77727 5.88825 6.00668 6.21608 6.38870 6.62231 6.85659 7.11381 7.18778 7.27634 7.44075 7.50614 7.73598 7.85184 8.22824 8.30259 8.59091 8.96709 9.53407 11.00851 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.002017 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.102788 B =13879.864192 C =14645.297756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.690 5.690 13 C 0.074 3.926 14 C -0.132 4.132 15 C 0.512 3.488 16 O -0.492 6.492 17 N -0.637 5.637 18 C 0.066 3.934 19 S 0.351 5.649 20 C -0.277 4.277 21 C -0.068 4.068 22 C -0.112 4.112 23 C 0.277 3.723 24 N -0.429 5.429 25 C -0.060 4.060 26 C -0.118 4.118 27 C -0.038 4.038 28 H 0.031 0.969 29 H 0.081 0.919 30 H 0.005 0.995 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.420 0.580 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 5.309 -26.437 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.321 5.321 13 C -0.057 4.057 14 C -0.172 4.172 15 C 0.300 3.700 16 O -0.366 6.366 17 N -0.281 5.281 18 C -0.156 4.156 19 S 0.616 5.384 20 C -0.394 4.394 21 C -0.080 4.080 22 C -0.133 4.133 23 C -0.038 4.038 24 N -0.106 5.106 25 C -0.099 4.099 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.258 0.742 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.802 5.311 -25.483 26.307 hybrid contribution 1.705 -1.244 0.043 2.111 sum 5.507 4.067 -25.440 26.345 Atomic orbital electron populations 1.21722 0.97784 0.99336 0.99505 1.19102 0.92695 0.92434 0.85223 0.97916 1.21200 1.31732 1.12588 0.90425 0.92250 1.24933 0.95037 0.94998 0.99085 1.69889 1.36403 1.22754 1.23645 0.86566 0.79042 0.79756 0.82046 1.21282 1.20194 1.20343 1.60761 1.31960 1.33180 1.06224 1.21651 1.00936 0.93700 0.89369 1.21728 1.04751 0.98562 0.92177 1.21623 0.75184 0.89787 0.83382 1.90638 1.45621 1.18310 1.82061 1.43204 1.64105 1.13446 1.07335 1.21757 1.03663 1.00269 0.89908 1.84447 1.59788 0.94569 0.99629 1.26467 1.10625 1.00759 1.01554 1.20737 1.00735 0.90152 0.96361 1.15311 1.17726 0.88455 0.91852 1.24989 0.92942 0.91910 0.94009 1.81285 1.10927 1.11289 1.07123 1.21030 1.01098 0.98207 0.89545 1.22312 1.01338 0.95440 0.96561 1.20780 1.02802 0.94198 0.89972 0.94966 0.90042 0.97608 0.92802 0.85337 0.90733 0.95121 0.88217 0.87218 0.74175 0.89931 0.90741 0.90513 0.89976 0.90525 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.19 37.16 0.34 -2.74 16 2 C 0.21 5.29 2.60 -68.87 -0.18 5.11 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.00 8.59 -34.44 -0.30 -14.30 16 5 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.69 -13.81 6.30 -107.95 -0.68 -14.49 16 13 C 0.07 1.24 4.77 -3.82 -0.02 1.23 16 14 C -0.13 -1.55 5.96 -27.88 -0.17 -1.71 16 15 C 0.51 6.06 7.79 -10.98 -0.09 5.97 16 16 O -0.49 -7.16 13.40 5.56 0.07 -7.09 16 17 N -0.64 -6.27 5.36 -11.85 -0.06 -6.34 16 18 C 0.07 0.68 6.94 -15.08 -0.10 0.58 16 19 S 0.35 3.52 19.96 -107.50 -2.15 1.38 16 20 C -0.28 -2.35 7.30 -35.27 -0.26 -2.60 16 21 C -0.07 -0.61 6.64 -102.38 -0.68 -1.29 16 22 C -0.11 -1.14 5.89 -105.58 -0.62 -1.77 16 23 C 0.28 3.12 14.92 -22.47 -0.34 2.78 16 24 N -0.43 -5.53 18.54 41.84 0.78 -4.76 16 25 C -0.06 -0.39 6.81 -26.32 -0.18 -0.57 16 26 C -0.12 -0.56 7.13 -25.49 -0.18 -0.74 16 27 C -0.04 -0.22 6.81 -26.42 -0.18 -0.40 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 30 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.33 6.26 8.22 -39.30 -0.32 5.94 16 33 H 0.07 1.35 7.39 -51.93 -0.38 0.97 16 34 H 0.03 0.55 8.01 -51.93 -0.42 0.14 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.42 3.32 8.11 -40.82 -0.33 2.99 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -31.01 374.66 -9.73 -40.73 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.90 Total: 2.38 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.04 Total: -8.87 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.66 Total: -50.15 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.07 Total: -7.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.15 Total: 1.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.01 -9.73 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.020 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds