Wall clock time and date at job start Tue Mar 31 2020 18:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46919 * 180.02562 * 14 13 12 16 16 O 1.21279 * 119.99969 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.38805 * 120.00071 * 180.02562 * 17 15 14 19 19 S 1.70091 * 124.59436 * 359.69320 * 18 17 15 20 20 C 1.76339 * 92.70864 * 179.97438 * 19 18 17 21 21 C 1.33072 * 110.72646 * 0.29735 * 20 19 18 22 22 C 1.36311 * 124.60184 * 179.97438 * 18 17 15 23 23 C 1.43200 * 123.32789 * 359.93972 * 22 18 17 24 24 N 9.51904 * 107.12200 * 257.93409 * 2 1 3 25 25 C 1.52605 * 110.21160 * 179.80792 * 21 20 19 26 26 C 1.54179 * 104.91994 * 342.52600 * 25 21 20 27 27 C 1.52387 * 138.82703 * 179.97438 * 20 19 18 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 33 33 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 34 34 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 35 35 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 36 36 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 37 37 H 0.97004 * 120.00390 * 359.97438 * 17 15 14 38 38 H 1.08996 * 110.35526 * 101.38531 * 25 21 20 39 39 H 1.09000 * 110.34976 * 223.66847 * 25 21 20 40 40 H 1.09007 * 110.99809 * 268.35699 * 26 25 21 41 41 H 1.08994 * 111.03080 * 144.54181 * 26 25 21 42 42 H 1.08997 * 110.35712 * 316.59230 * 27 20 19 43 43 H 1.08999 * 110.35579 * 78.77500 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6612 0.4064 -4.7512 16 8 2.3297 1.5658 -4.6210 17 7 3.0877 -0.0422 -5.9484 18 6 3.1480 0.8228 -7.0323 19 16 2.7065 2.4647 -6.9833 20 6 3.0940 2.7060 -8.6866 21 6 3.5278 1.5742 -9.2358 22 6 3.5640 0.4704 -8.2816 23 6 3.9939 -0.8520 -8.6239 24 7 4.3325 -1.9016 -8.8962 25 6 3.8550 1.7951 -10.7099 26 6 3.1385 3.1083 -11.0832 27 6 3.0745 3.8259 -9.7199 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 2.9172 -1.1204 -1.0288 33 1 1.0871 0.6165 -2.5525 34 1 2.7588 1.0464 -2.1181 35 1 3.5917 -0.9260 -3.3683 36 1 1.9201 -1.3564 -3.8032 37 1 3.3532 -0.9693 -6.0524 38 1 4.9313 1.8981 -10.8481 39 1 3.4720 0.9703 -11.3109 40 1 2.1378 2.9115 -11.4681 41 1 3.7243 3.6833 -11.8002 42 1 2.1528 4.4018 -9.6375 43 1 3.9398 4.4760 -9.5908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:00 Heat of formation + Delta-G solvation = 4.234697 kcal Electronic energy + Delta-G solvation = -24566.618968 eV Core-core repulsion = 20930.413214 eV Total energy + Delta-G solvation = -3636.205754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67283 -40.28164 -38.06244 -37.75511 -36.77334 -34.94158 -34.17730 -32.47537 -29.63562 -29.21520 -28.18977 -27.29089 -25.59972 -24.22412 -22.31220 -21.76773 -21.73604 -20.26836 -19.44275 -18.92219 -18.48557 -17.33597 -17.18832 -16.93413 -16.61196 -16.47125 -15.93502 -15.62871 -15.18858 -15.04134 -14.66346 -14.60559 -14.30629 -14.12191 -13.68213 -13.65115 -13.54918 -13.31219 -12.98895 -12.90246 -12.87687 -12.83746 -12.65634 -12.38277 -12.26715 -12.21277 -12.13116 -12.03545 -11.96301 -11.81709 -11.18537 -10.94725 -10.88932 -10.56381 -9.35594 -9.11876 -9.05214 -8.12501 -6.27126 -0.41318 0.09943 0.89311 0.96336 1.28415 1.43990 1.45862 1.52039 1.53446 1.57684 2.34744 2.42299 2.97878 3.15989 3.31369 3.48593 3.69680 3.73183 4.03802 4.13595 4.24126 4.25333 4.35740 4.57916 4.65157 4.75346 4.79202 4.87934 4.93628 4.95590 4.98789 5.00975 5.08377 5.20015 5.22486 5.24364 5.38194 5.42057 5.47143 5.66745 5.81195 5.86117 6.22168 6.38738 6.42882 6.60478 6.75774 7.00648 7.43266 8.93137 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.002017 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.102788 B =13879.864192 C =14645.297756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.033 1.033 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.682 5.682 13 C 0.078 3.922 14 C -0.119 4.119 15 C 0.517 3.483 16 O -0.524 6.524 17 N -0.626 5.626 18 C 0.054 3.946 19 S 0.326 5.674 20 C -0.268 4.268 21 C -0.083 4.083 22 C -0.113 4.113 23 C 0.293 3.707 24 N -0.458 5.458 25 C -0.062 4.062 26 C -0.110 4.110 27 C -0.041 4.041 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.338 0.662 33 H 0.058 0.942 34 H 0.014 0.986 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.430 0.570 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 4.755 -28.003 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.015 1.015 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.195 1.195 12 N -0.313 5.313 13 C -0.053 4.053 14 C -0.159 4.159 15 C 0.306 3.694 16 O -0.400 6.400 17 N -0.270 5.270 18 C -0.167 4.167 19 S 0.592 5.408 20 C -0.385 4.385 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.021 4.021 24 N -0.136 5.136 25 C -0.101 4.101 26 C -0.149 4.149 27 C -0.081 4.081 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.270 0.730 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.708 4.728 -27.088 27.898 hybrid contribution 1.428 -1.002 0.436 1.798 sum 6.136 3.727 -26.652 27.602 Atomic orbital electron populations 1.21552 0.97806 0.98982 0.98949 1.18904 0.92744 0.90778 0.86943 1.01531 1.21564 1.31791 1.12803 0.91386 0.91721 1.25789 0.95227 0.95704 1.02240 1.70033 1.37438 1.24089 1.24238 0.85509 0.78726 0.78623 0.78131 1.21212 1.19516 1.19490 1.60625 1.32444 1.33048 1.05219 1.21563 0.99980 0.93437 0.90281 1.21553 1.06441 0.98117 0.89770 1.21508 0.74877 0.89213 0.83846 1.90647 1.47151 1.19546 1.82696 1.42974 1.63511 1.13865 1.06690 1.21820 1.04433 1.00425 0.90027 1.84545 1.60039 0.94801 1.01464 1.26762 1.09363 1.01803 1.00567 1.21098 1.00950 0.89658 0.97666 1.15476 1.17474 0.88335 0.92156 1.25067 0.92159 0.91776 0.93138 1.81299 1.12036 1.12120 1.08168 1.21160 1.01910 0.99256 0.87728 1.22343 1.01803 0.94419 0.96286 1.20971 1.03889 0.93675 0.89523 0.94992 0.92570 0.96186 0.92865 0.84460 0.92393 0.96771 0.85597 0.85249 0.73000 0.89089 0.90665 0.90100 0.87744 0.89568 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.19 71.98 0.66 -5.07 16 2 C 0.21 10.86 2.60 44.17 0.11 10.98 16 3 H -0.03 -1.87 7.80 -2.39 -0.02 -1.89 16 4 C -0.54 -28.94 8.59 25.60 0.22 -28.72 16 5 H 0.06 3.34 7.62 -2.91 -0.02 3.31 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 9 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 N -0.68 -27.06 6.30 -495.46 -3.12 -30.18 16 13 C 0.08 2.61 4.77 86.30 0.41 3.02 16 14 C -0.12 -2.60 5.96 29.85 0.18 -2.42 16 15 C 0.52 11.84 7.79 87.66 0.68 12.52 16 16 O -0.52 -15.36 13.40 -3.03 -0.04 -15.40 16 17 N -0.63 -11.69 5.36 -309.78 -1.66 -13.35 16 18 C 0.05 1.09 6.94 83.14 0.58 1.67 16 19 S 0.33 6.45 19.96 -56.49 -1.13 5.33 16 20 C -0.27 -4.16 7.30 25.07 0.18 -3.98 16 21 C -0.08 -1.36 6.64 -18.41 -0.12 -1.48 16 22 C -0.11 -2.19 5.89 -20.48 -0.12 -2.31 16 23 C 0.29 6.33 14.92 88.33 1.32 7.64 16 24 N -0.46 -11.46 18.54 19.00 0.35 -11.10 16 25 C -0.06 -0.67 6.81 30.86 0.21 -0.46 16 26 C -0.11 -0.73 7.13 31.40 0.22 -0.51 16 27 C -0.04 -0.38 6.81 30.80 0.21 -0.17 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 30 H 0.02 0.89 7.45 -2.38 -0.02 0.87 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.34 12.49 8.22 -89.70 -0.74 11.75 16 33 H 0.06 2.13 7.39 -2.39 -0.02 2.12 16 34 H 0.01 0.52 8.01 -2.39 -0.02 0.50 16 35 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.43 6.16 8.11 -92.70 -0.75 5.40 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -67.60 374.66 1.44 -66.15 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -0.42 Total: 14.71 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.20 Total: -8.31 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.19 Total: -107.41 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.04 Total: -15.40 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -1.13 Total: 5.33 kcal Total: -67.60 1.44 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.389 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds