Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47548 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99600 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00584 * 180.02562 * 15 14 13 18 18 C 1.38800 * 120.00038 * 179.97438 * 17 15 14 19 19 S 1.70083 * 124.59886 * 359.69555 * 18 17 15 20 20 C 1.76337 * 92.71177 * 179.97438 * 19 18 17 21 21 C 1.33072 * 110.72627 * 0.29709 * 20 19 18 22 22 C 1.36315 * 124.59388 * 179.97438 * 18 17 15 23 23 C 1.43194 * 123.33698 * 359.93871 * 22 18 17 24 24 N 9.51903 * 107.09769 * 102.06983 * 2 1 3 25 25 C 1.52605 * 110.21258 * 179.81365 * 21 20 19 26 26 C 1.54173 * 104.92123 * 342.52833 * 25 21 20 27 27 C 1.52390 * 138.82880 * 180.02562 * 20 19 18 28 28 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 29 29 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 30 30 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 31 31 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 32 32 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 33 33 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 34 34 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 35 35 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 36 36 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 37 37 H 0.96998 * 119.99668 * 359.97438 * 17 15 14 38 38 H 1.09001 * 110.34827 * 101.39062 * 25 21 20 39 39 H 1.09002 * 110.35242 * 223.66547 * 25 21 20 40 40 H 1.09000 * 110.99722 * 268.35269 * 26 25 21 41 41 H 1.09000 * 111.02721 * 144.53235 * 26 25 21 42 42 H 1.08998 * 110.35731 * 316.57594 * 27 20 19 43 43 H 1.08997 * 110.35623 * 78.76616 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 6 2.6600 0.4062 4.7515 16 8 2.3277 1.5654 4.6214 17 7 3.0873 -0.0422 5.9485 18 6 3.1465 0.8226 7.0326 19 16 2.7167 2.4674 6.9806 20 6 3.0933 2.7060 8.6867 21 6 3.5274 1.5743 9.2359 22 6 3.5622 0.4700 8.2821 23 6 3.9905 -0.8527 8.6249 24 7 4.3286 -1.9025 8.8972 25 6 3.8539 1.7950 10.7102 26 6 3.9769 3.3240 10.8649 27 6 3.0739 3.8259 9.7200 28 1 -0.3633 0.6094 0.8274 29 1 -0.3634 0.4118 -0.9415 30 1 -0.3633 -1.0214 0.1140 31 1 2.2478 -1.8381 -3.4691 32 1 2.9173 -1.1203 1.0288 33 1 2.7587 1.0465 2.1182 34 1 1.0870 0.6165 2.5525 35 1 1.9201 -1.3563 3.8031 36 1 3.5916 -0.9259 3.3684 37 1 3.3534 -0.9691 6.0524 38 1 3.0484 1.4141 11.3380 39 1 4.7964 1.3111 10.9663 40 1 5.0073 3.6495 10.7213 41 1 3.5976 3.6509 11.8331 42 1 3.4783 4.7433 9.2924 43 1 2.0587 3.9917 10.0804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = 23.504128 kcal Electronic energy + Delta-G solvation = -24645.602134 eV Core-core repulsion = 21010.231965 eV Total energy + Delta-G solvation = -3635.370169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82502 -39.64754 -37.18838 -36.41595 -35.87904 -33.57509 -33.06990 -31.26288 -28.85665 -28.51231 -27.44076 -25.04097 -24.55308 -23.07921 -21.45238 -21.09073 -19.83402 -19.55058 -18.70215 -18.06474 -17.53411 -16.49907 -16.40135 -16.00614 -15.97336 -15.06538 -14.73497 -14.32289 -13.94717 -13.91595 -13.73910 -13.53934 -13.26569 -13.18688 -12.86603 -12.69225 -12.59123 -12.32694 -12.23046 -11.95735 -11.84543 -11.73646 -11.57664 -11.48422 -11.35830 -11.01044 -10.85136 -10.61731 -10.41675 -10.13434 -9.98397 -9.69942 -8.92620 -8.61830 -8.36822 -8.27588 -7.63876 -6.50643 -4.12348 0.35267 0.80109 1.55841 1.64831 2.12345 2.31018 2.41995 3.16628 3.37150 3.40526 3.58333 3.77333 3.98777 4.17575 4.30558 4.44996 4.57729 4.60915 4.84109 5.01767 5.04251 5.10693 5.22322 5.25515 5.32779 5.38044 5.42897 5.47831 5.52790 5.53922 5.74025 5.83687 5.96094 6.05089 6.20404 6.42668 6.55027 6.67200 6.76029 6.89926 7.23504 7.41243 7.43026 7.66768 8.01388 8.33787 8.39765 8.89604 9.56604 10.89546 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002165 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.512355 B =12927.513814 C =13848.805892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 H -0.004 1.004 4 C -0.606 4.606 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.904 5.904 8 Si 1.046 2.954 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.132 4.132 15 C 0.513 3.487 16 O -0.494 6.494 17 N -0.636 5.636 18 C 0.065 3.935 19 S 0.349 5.651 20 C -0.276 4.276 21 C -0.068 4.068 22 C -0.110 4.110 23 C 0.276 3.724 24 N -0.428 5.428 25 C -0.060 4.060 26 C -0.118 4.118 27 C -0.038 4.038 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.336 0.664 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.421 0.579 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 9.094 29.359 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 H 0.013 0.987 4 C -0.644 4.644 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.537 5.537 8 Si 0.875 3.125 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.060 4.060 14 C -0.173 4.173 15 C 0.301 3.699 16 O -0.368 6.368 17 N -0.280 5.280 18 C -0.157 4.157 19 S 0.615 5.385 20 C -0.393 4.393 21 C -0.080 4.080 22 C -0.132 4.132 23 C -0.039 4.039 24 N -0.105 5.105 25 C -0.099 4.099 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.259 0.741 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.755 10.107 27.433 29.289 hybrid contribution 1.867 -2.082 1.973 3.423 sum 3.622 8.025 29.407 30.697 Atomic orbital electron populations 1.22132 0.98220 1.00302 0.98960 1.19415 0.92210 0.92466 0.87845 0.98675 1.22064 1.40945 1.10198 0.91220 0.92191 1.25736 0.94583 1.05045 0.92061 1.70859 1.41506 1.09932 1.31436 0.84011 0.77210 0.75230 0.76058 1.21080 1.19931 1.21118 1.60608 1.32573 1.32682 1.05440 1.21711 1.01006 0.93788 0.89502 1.21703 1.04889 0.98584 0.92078 1.21572 0.75206 0.89728 0.83400 1.90638 1.45749 1.18298 1.82117 1.43172 1.64020 1.13512 1.07318 1.21745 1.03803 1.00230 0.89915 1.84407 1.60538 0.94251 0.99350 1.26463 1.10534 1.01050 1.01289 1.20748 1.00943 0.90137 0.96134 1.15320 1.17525 0.88471 0.91867 1.24984 0.92998 0.91912 0.94048 1.81290 1.10829 1.11274 1.07084 1.21034 1.02221 0.96727 0.89916 1.22316 1.00499 0.94291 0.98545 1.20789 1.00731 0.94776 0.91458 0.96252 0.92863 0.93141 0.92204 0.84653 0.94953 0.90649 0.87138 0.88091 0.74134 0.89899 0.90717 0.90499 0.89948 0.90522 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.05 37.16 0.34 -2.75 16 2 C 0.19 4.43 2.18 -68.87 -0.15 4.28 16 3 H 0.00 -0.10 6.46 -51.92 -0.34 -0.44 16 4 C -0.61 -16.62 8.83 -34.44 -0.30 -16.92 16 5 H 0.06 1.76 7.92 -52.49 -0.42 1.34 16 6 C 0.03 0.89 5.29 -17.82 -0.09 0.80 16 7 N -0.90 -27.36 13.70 55.43 0.76 -26.60 16 8 Si 1.05 24.99 26.29 -169.99 -4.47 20.52 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -6.07 5.76 56.52 0.33 -5.74 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.68 -13.21 6.30 -107.95 -0.68 -13.89 16 13 C 0.07 1.11 4.77 -3.83 -0.02 1.10 16 14 C -0.13 -1.47 5.96 -27.89 -0.17 -1.64 16 15 C 0.51 5.76 7.79 -10.99 -0.09 5.68 16 16 O -0.49 -6.81 13.40 5.54 0.07 -6.74 16 17 N -0.64 -5.99 5.36 -11.85 -0.06 -6.06 16 18 C 0.06 0.65 6.94 -15.09 -0.10 0.54 16 19 S 0.35 3.35 19.96 -107.50 -2.15 1.20 16 20 C -0.28 -2.24 7.30 -35.26 -0.26 -2.50 16 21 C -0.07 -0.59 6.64 -102.38 -0.68 -1.27 16 22 C -0.11 -1.09 5.89 -105.57 -0.62 -1.71 16 23 C 0.28 3.04 14.92 -22.47 -0.34 2.70 16 24 N -0.43 -5.43 18.54 41.84 0.78 -4.65 16 25 C -0.06 -0.37 6.81 -26.32 -0.18 -0.55 16 26 C -0.12 -0.53 7.13 -25.48 -0.18 -0.71 16 27 C -0.04 -0.21 6.81 -26.41 -0.18 -0.39 16 28 H 0.02 0.37 7.62 -51.93 -0.40 -0.02 16 29 H 0.05 1.23 4.88 -51.93 -0.25 0.98 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 32 H 0.34 6.38 8.26 -39.29 -0.32 6.06 16 33 H 0.03 0.54 8.01 -51.93 -0.42 0.13 16 34 H 0.08 1.26 7.52 -51.93 -0.39 0.86 16 35 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.42 3.18 8.11 -40.82 -0.33 2.85 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -32.14 370.61 -9.08 -41.22 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.89 Total: 2.76 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.02 Total: -13.34 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.79 Total: -51.21 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.07 Total: -6.74 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.47 Total: 20.52 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.15 Total: 1.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.14 -9.08 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.725 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds