Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47548 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99600 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00584 * 180.02562 * 15 14 13 18 18 C 1.38800 * 120.00038 * 179.97438 * 17 15 14 19 19 S 1.70083 * 124.59886 * 359.69555 * 18 17 15 20 20 C 1.76337 * 92.71177 * 179.97438 * 19 18 17 21 21 C 1.33072 * 110.72627 * 0.29709 * 20 19 18 22 22 C 1.36315 * 124.59388 * 179.97438 * 18 17 15 23 23 C 1.43194 * 123.33698 * 359.93871 * 22 18 17 24 24 N 9.51903 * 107.09769 * 102.06983 * 2 1 3 25 25 C 1.52605 * 110.21258 * 179.81365 * 21 20 19 26 26 C 1.54173 * 104.92123 * 342.52833 * 25 21 20 27 27 C 1.52390 * 138.82880 * 180.02562 * 20 19 18 28 28 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 29 29 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 30 30 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 31 31 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 32 32 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 33 33 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 34 34 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 35 35 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 36 36 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 37 37 H 0.96998 * 119.99668 * 359.97438 * 17 15 14 38 38 H 1.09001 * 110.34827 * 101.39062 * 25 21 20 39 39 H 1.09002 * 110.35242 * 223.66547 * 25 21 20 40 40 H 1.09000 * 110.99722 * 268.35269 * 26 25 21 41 41 H 1.09000 * 111.02721 * 144.53235 * 26 25 21 42 42 H 1.08998 * 110.35731 * 316.57594 * 27 20 19 43 43 H 1.08997 * 110.35623 * 78.76616 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 6 2.6600 0.4062 4.7515 16 8 2.3277 1.5654 4.6214 17 7 3.0873 -0.0422 5.9485 18 6 3.1465 0.8226 7.0326 19 16 2.7167 2.4674 6.9806 20 6 3.0933 2.7060 8.6867 21 6 3.5274 1.5743 9.2359 22 6 3.5622 0.4700 8.2821 23 6 3.9905 -0.8527 8.6249 24 7 4.3286 -1.9025 8.8972 25 6 3.8539 1.7950 10.7102 26 6 3.9769 3.3240 10.8649 27 6 3.0739 3.8259 9.7200 28 1 -0.3633 0.6094 0.8274 29 1 -0.3634 0.4118 -0.9415 30 1 -0.3633 -1.0214 0.1140 31 1 2.2478 -1.8381 -3.4691 32 1 2.9173 -1.1203 1.0288 33 1 2.7587 1.0465 2.1182 34 1 1.0870 0.6165 2.5525 35 1 1.9201 -1.3563 3.8031 36 1 3.5916 -0.9259 3.3684 37 1 3.3534 -0.9691 6.0524 38 1 3.0484 1.4141 11.3380 39 1 4.7964 1.3111 10.9663 40 1 5.0073 3.6495 10.7213 41 1 3.5976 3.6509 11.8331 42 1 3.4783 4.7433 9.2924 43 1 2.0587 3.9917 10.0804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = 2.281691 kcal Electronic energy + Delta-G solvation = -24646.522408 eV Core-core repulsion = 21010.231965 eV Total energy + Delta-G solvation = -3636.290443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.68738 -40.29034 -38.14408 -37.82144 -36.79045 -34.98615 -34.20230 -32.86050 -29.94420 -29.25657 -28.24104 -26.84382 -25.58388 -24.17703 -22.28536 -21.77879 -21.59987 -20.27983 -19.69723 -19.35163 -18.93579 -17.39852 -17.21093 -16.84650 -16.63207 -16.33618 -15.97160 -15.48568 -15.40367 -15.09150 -14.73031 -14.66987 -14.32422 -14.28008 -13.82195 -13.68153 -13.56859 -13.39890 -13.32195 -13.10073 -12.90729 -12.87232 -12.50000 -12.40589 -12.25930 -12.22371 -12.10773 -11.96828 -11.80312 -11.55871 -11.19476 -10.99542 -10.95451 -10.41497 -9.35755 -9.25359 -9.06349 -8.74191 -6.37671 -0.42606 0.08964 0.88253 0.94961 1.26308 1.46540 1.50611 1.51878 1.55992 1.71458 2.33377 2.47211 2.96742 3.05277 3.25488 3.45501 3.66649 3.69332 3.98913 4.12569 4.16274 4.24619 4.33742 4.52837 4.58513 4.64011 4.73685 4.85724 4.87337 4.88797 4.91324 4.93843 4.97594 4.98186 5.15441 5.19214 5.23676 5.37433 5.41381 5.59717 5.76957 5.79359 6.02461 6.25412 6.37466 6.56553 6.64862 6.77789 7.39922 8.63689 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002165 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.512355 B =12927.513814 C =13848.805892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.189 3.811 3 H -0.005 1.005 4 C -0.605 4.605 5 H 0.027 0.973 6 C -0.020 4.020 7 N -0.936 5.936 8 Si 1.082 2.918 9 H -0.289 1.289 10 H -0.244 1.244 11 H -0.268 1.268 12 N -0.682 5.682 13 C 0.073 3.927 14 C -0.122 4.122 15 C 0.518 3.482 16 O -0.522 6.522 17 N -0.627 5.627 18 C 0.053 3.947 19 S 0.332 5.668 20 C -0.268 4.268 21 C -0.083 4.083 22 C -0.113 4.113 23 C 0.293 3.707 24 N -0.460 5.460 25 C -0.062 4.062 26 C -0.110 4.110 27 C -0.041 4.041 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.253 0.747 32 H 0.337 0.663 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.429 0.571 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 10.923 32.014 33.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.079 3.921 3 H 0.013 0.987 4 C -0.643 4.643 5 H 0.046 0.954 6 C -0.219 4.219 7 N -0.572 5.572 8 Si 0.904 3.096 9 H -0.215 1.215 10 H -0.168 1.168 11 H -0.194 1.194 12 N -0.313 5.313 13 C -0.057 4.057 14 C -0.162 4.162 15 C 0.307 3.693 16 O -0.398 6.398 17 N -0.271 5.271 18 C -0.168 4.168 19 S 0.598 5.402 20 C -0.385 4.385 21 C -0.094 4.094 22 C -0.135 4.135 23 C -0.022 4.022 24 N -0.138 5.138 25 C -0.101 4.101 26 C -0.149 4.149 27 C -0.080 4.080 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.269 0.731 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.416 11.907 30.139 32.437 hybrid contribution 2.024 -2.686 1.247 3.587 sum 3.440 9.221 31.386 32.893 Atomic orbital electron populations 1.22027 0.97121 1.00415 0.99604 1.19292 0.93035 0.92001 0.87754 0.98724 1.22302 1.39761 1.08984 0.93239 0.95423 1.27107 0.94406 1.08360 0.91979 1.70986 1.44103 1.09581 1.32565 0.83576 0.78815 0.70873 0.76326 1.21485 1.16848 1.19363 1.60517 1.32705 1.33068 1.04993 1.21674 1.00777 0.93430 0.89820 1.21549 1.06281 0.98267 0.90086 1.21436 0.74917 0.89191 0.83750 1.90642 1.47128 1.19335 1.82677 1.42979 1.63470 1.13901 1.06770 1.21830 1.04459 1.00500 0.89982 1.84456 1.60611 0.94213 1.00938 1.26767 1.09260 1.02003 1.00457 1.21091 1.01263 0.89689 0.97384 1.15491 1.17482 0.88287 0.92276 1.25098 0.92158 0.91810 0.93120 1.81303 1.12055 1.12197 1.08208 1.21161 1.02451 0.98200 0.88301 1.22346 1.00674 0.92684 0.99186 1.20974 1.01883 0.94211 0.90953 0.93448 0.93789 0.93851 0.93798 0.84579 0.95901 0.91231 0.85442 0.86044 0.73097 0.89117 0.90769 0.90134 0.87776 0.89508 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 9.05 71.98 0.65 -5.07 16 2 C 0.19 8.63 2.18 44.17 0.10 8.73 16 3 H 0.00 -0.22 6.46 -2.38 -0.02 -0.23 16 4 C -0.60 -33.51 8.83 25.60 0.23 -33.29 16 5 H 0.03 1.67 7.92 -2.91 -0.02 1.64 16 6 C -0.02 -1.13 5.29 84.65 0.45 -0.68 16 7 N -0.94 -58.12 13.70 21.45 0.29 -57.82 16 8 Si 1.08 49.57 26.29 68.60 1.80 51.37 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 10 H -0.24 -10.00 5.76 99.48 0.57 -9.43 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.68 -25.65 6.30 -495.45 -3.12 -28.77 16 13 C 0.07 2.19 4.77 86.30 0.41 2.60 16 14 C -0.12 -2.46 5.96 29.85 0.18 -2.28 16 15 C 0.52 10.85 7.79 87.66 0.68 11.53 16 16 O -0.52 -13.79 13.40 -3.08 -0.04 -13.84 16 17 N -0.63 -10.93 5.36 -309.78 -1.66 -12.59 16 18 C 0.05 1.01 6.94 83.14 0.58 1.59 16 19 S 0.33 6.00 19.96 -56.49 -1.13 4.88 16 20 C -0.27 -3.85 7.30 25.07 0.18 -3.67 16 21 C -0.08 -1.30 6.64 -18.40 -0.12 -1.42 16 22 C -0.11 -2.11 5.89 -20.48 -0.12 -2.23 16 23 C 0.29 6.18 14.92 88.33 1.32 7.50 16 24 N -0.46 -11.38 18.54 19.00 0.35 -11.03 16 25 C -0.06 -0.64 6.81 30.86 0.21 -0.43 16 26 C -0.11 -0.66 7.13 31.40 0.22 -0.43 16 27 C -0.04 -0.33 6.81 30.80 0.21 -0.12 16 28 H 0.05 1.74 7.62 -2.39 -0.02 1.73 16 29 H 0.04 1.94 4.88 -2.39 -0.01 1.93 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 32 H 0.34 12.58 8.26 -89.69 -0.74 11.84 16 33 H 0.02 0.74 8.01 -2.39 -0.02 0.72 16 34 H 0.07 2.18 7.52 -2.39 -0.02 2.16 16 35 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.43 5.83 8.11 -92.71 -0.75 5.07 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -70.25 370.61 1.07 -69.17 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.60 Total: 16.32 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 5.17 Total: -17.68 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.14 Total: -110.22 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.04 Total: -13.84 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.80 Total: 51.37 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.13 Total: 4.88 kcal Total: -70.25 1.07 -69.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.454 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds