Wall clock time and date at job start Tue Mar 31 2020 18:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46894 * 111.00220 * 274.99988 * 12 2 1 14 14 H 1.09003 * 109.46882 * 35.00199 * 13 12 2 15 15 C 1.52996 * 109.47341 * 275.00061 * 13 12 2 16 16 C 1.50701 * 109.47286 * 155.00073 * 13 12 2 17 17 O 1.21290 * 120.00161 * 359.97438 * 16 13 12 18 18 N 1.34779 * 120.00046 * 180.02562 * 16 13 12 19 19 C 1.38804 * 119.99821 * 179.97438 * 18 16 13 20 20 S 1.70089 * 124.59967 * 0.03090 * 19 18 16 21 21 C 1.76337 * 92.71091 * 179.97438 * 20 19 18 22 22 C 1.33071 * 110.72824 * 0.02562 * 21 20 19 23 23 C 1.36314 * 124.59688 * 179.72221 * 19 18 16 24 24 C 1.43197 * 123.33317 * 0.02562 * 23 19 18 25 25 N 8.07488 * 94.70219 * 72.64893 * 2 1 3 26 26 C 1.52604 * 110.21566 * 180.02562 * 22 21 20 27 27 C 1.54180 * 104.91635 * 17.46870 * 26 22 21 28 28 C 1.52384 * 138.82724 * 180.02562 * 21 20 19 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 33 33 H 1.00900 * 110.99934 * 38.95495 * 12 2 1 34 34 H 1.09003 * 109.47483 * 179.97438 * 15 13 12 35 35 H 1.09003 * 109.47245 * 299.99916 * 15 13 12 36 36 H 1.09001 * 109.47260 * 59.99484 * 15 13 12 37 37 H 0.96997 * 119.99957 * 0.02562 * 18 16 13 38 38 H 1.08997 * 110.35422 * 136.33126 * 26 22 21 39 39 H 1.09004 * 110.35070 * 258.50630 * 26 22 21 40 40 H 1.09002 * 110.99648 * 91.65350 * 27 26 22 41 41 H 1.09007 * 110.99851 * 215.43928 * 27 26 22 42 42 H 1.09006 * 110.35222 * 281.37502 * 28 21 20 43 43 H 1.08996 * 110.35951 * 43.67075 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9808 2.3224 16 6 1.9787 -0.5677 3.6258 17 8 1.8632 -1.7744 3.5855 18 7 2.0131 0.0665 4.8146 19 6 1.9170 -0.6613 5.9926 20 16 1.7536 -2.3524 6.0723 21 6 1.7149 -2.3494 7.8353 22 6 1.8224 -1.1096 8.3066 23 6 1.9468 -0.1183 7.2425 24 6 2.0821 1.2861 7.4873 25 7 2.1919 2.4000 7.6815 26 6 1.7883 -1.1206 9.8322 27 6 2.0904 -2.5805 10.2254 28 6 1.5947 -3.3461 8.9817 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 0.7092 1.1618 -3.4843 33 1 1.4496 -1.4979 1.4100 34 1 3.4575 1.6602 3.1736 35 1 4.2360 0.2705 2.3785 36 1 3.4862 1.5524 1.3973 37 1 2.1043 1.0317 4.8468 38 1 2.5518 -0.4542 10.2333 39 1 0.8022 -0.8260 10.1915 40 1 3.1593 -2.7309 10.3772 41 1 1.5276 -2.8706 11.1127 42 1 0.5561 -3.6505 9.1121 43 1 2.2250 -4.2157 8.7958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:15 Heat of formation + Delta-G solvation = 29.799710 kcal Electronic energy + Delta-G solvation = -25376.790198 eV Core-core repulsion = 21741.693026 eV Total energy + Delta-G solvation = -3635.097172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71847 -39.53204 -37.09064 -36.32083 -35.68513 -33.55150 -32.88839 -30.62256 -28.67979 -27.76076 -27.13720 -25.27995 -24.92589 -23.66305 -21.54492 -20.95748 -19.93296 -19.42265 -18.62183 -17.93989 -16.53698 -16.37901 -16.05847 -15.76255 -15.66552 -14.86864 -14.79611 -14.30259 -13.88772 -13.80420 -13.41045 -13.14108 -13.02572 -12.85195 -12.65984 -12.53521 -12.22152 -12.17198 -12.09350 -12.00841 -11.73084 -11.57826 -11.49572 -11.47447 -11.10551 -10.94990 -10.80691 -10.62664 -10.47476 -10.20206 -10.03895 -9.75583 -9.09081 -8.47891 -8.41307 -8.21715 -7.47672 -6.04546 -4.07679 0.51080 0.94897 1.68893 1.79357 2.34630 2.47477 2.57958 3.30073 3.32649 3.36454 3.40198 3.91226 4.11707 4.28865 4.39117 4.55754 4.67006 4.72286 4.92610 5.18394 5.21384 5.27305 5.32492 5.35793 5.43013 5.45197 5.48683 5.61942 5.65815 5.83449 5.85169 5.98608 6.07699 6.09406 6.46999 6.55262 6.72755 6.73670 6.96235 7.18566 7.36816 7.63980 7.65387 7.79752 8.15199 8.38444 8.47917 8.99214 9.57760 11.02723 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002495 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.959021 B =11220.387354 C =11960.937631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.665 5.665 13 C 0.075 3.925 14 H 0.071 0.929 15 C -0.136 4.136 16 C 0.511 3.489 17 O -0.487 6.487 18 N -0.635 5.635 19 C 0.069 3.931 20 S 0.351 5.649 21 C -0.279 4.279 22 C -0.068 4.068 23 C -0.115 4.115 24 C 0.277 3.723 25 N -0.430 5.430 26 C -0.060 4.060 27 C -0.118 4.118 28 C -0.037 4.037 29 H 0.031 0.969 30 H 0.003 0.997 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.342 0.658 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.420 0.580 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -5.368 23.924 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.299 5.299 13 C -0.039 4.039 14 H 0.089 0.911 15 C -0.194 4.194 16 C 0.299 3.701 17 O -0.360 6.360 18 N -0.279 5.279 19 C -0.153 4.153 20 S 0.616 5.384 21 C -0.396 4.396 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.038 4.038 25 N -0.107 5.107 26 C -0.099 4.099 27 C -0.156 4.156 28 C -0.077 4.077 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.258 0.742 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.382 -5.440 22.632 23.317 hybrid contribution -0.656 1.248 0.273 1.436 sum 0.726 -4.192 22.905 23.296 Atomic orbital electron populations 1.22481 1.00608 0.99539 1.00526 1.19285 0.89618 0.94563 0.86056 0.94471 1.21048 1.30474 1.12591 0.89279 0.91769 1.24940 0.95257 0.95191 0.99077 1.69861 1.37160 1.23119 1.23604 0.86530 0.79192 0.79638 0.81852 1.20292 1.21477 1.20244 1.60959 1.59335 1.08248 1.01352 1.21494 0.99820 0.95179 0.87379 0.91121 1.21797 0.95745 0.99448 1.02433 1.21862 0.74181 0.88985 0.85040 1.90590 1.46207 1.14150 1.85020 1.43202 1.70493 1.11509 1.02687 1.21774 1.03812 1.01282 0.88406 1.84423 1.67701 0.92239 0.94057 1.26464 1.12235 0.99833 1.01088 1.20719 1.01417 0.90442 0.95342 1.15303 1.21956 0.86035 0.90308 1.24990 0.92962 0.91765 0.94083 1.81276 1.11071 1.11528 1.06851 1.21024 1.02535 0.97737 0.88567 1.22318 1.01989 0.93927 0.97408 1.20777 1.01990 0.95794 0.89115 0.95025 0.97843 0.88947 0.92927 0.83743 0.93377 0.91378 0.90091 0.74196 0.90791 0.89968 0.90535 0.90038 0.90053 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.92 37.16 0.33 -3.64 16 2 C 0.21 5.03 2.38 -68.87 -0.16 4.86 16 3 H 0.04 0.94 7.11 -51.93 -0.37 0.57 16 4 C -0.50 -13.25 8.84 -34.44 -0.30 -13.55 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.66 -13.45 5.92 -102.18 -0.60 -14.05 16 13 C 0.07 1.20 2.84 -68.87 -0.20 1.00 16 14 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16 15 C -0.14 -1.95 9.29 37.16 0.35 -1.61 16 16 C 0.51 7.43 7.14 -10.98 -0.08 7.35 16 17 O -0.49 -8.00 13.07 5.55 0.07 -7.93 16 18 N -0.63 -7.62 5.26 -11.84 -0.06 -7.69 16 19 C 0.07 0.82 6.94 -15.08 -0.10 0.71 16 20 S 0.35 3.89 19.96 -107.50 -2.15 1.75 16 21 C -0.28 -2.59 7.30 -35.27 -0.26 -2.85 16 22 C -0.07 -0.66 6.64 -102.38 -0.68 -1.34 16 23 C -0.11 -1.30 5.89 -105.57 -0.62 -1.92 16 24 C 0.28 3.44 14.92 -22.47 -0.34 3.10 16 25 N -0.43 -6.00 18.54 41.84 0.78 -5.23 16 26 C -0.06 -0.43 6.81 -26.32 -0.18 -0.61 16 27 C -0.12 -0.63 7.13 -25.47 -0.18 -0.81 16 28 C -0.04 -0.24 6.81 -26.40 -0.18 -0.42 16 29 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.00 0.05 7.43 -51.93 -0.39 -0.33 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.34 7.02 7.19 -39.29 -0.28 6.74 16 34 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.29 7.43 -51.93 -0.39 0.91 16 37 H 0.42 4.36 7.53 -40.82 -0.31 4.05 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -29.52 370.76 -9.20 -38.72 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.73 Total: 5.32 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.70 Total: -8.30 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.74 Total: -51.24 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.15 Total: 1.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.52 -9.20 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.521 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds