Wall clock time and date at job start Tue Mar 31 2020 18:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47158 * 2 1 4 4 C 1.50698 * 109.47306 * 119.99697 * 2 1 3 5 5 H 1.08001 * 120.00278 * 119.99553 * 4 2 1 6 6 C 1.37875 * 120.00133 * 300.00648 * 4 2 1 7 7 N 1.31525 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00366 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46743 * 59.99609 * 8 6 4 10 10 H 1.48493 * 109.47386 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47008 * 300.00002 * 8 6 4 12 12 N 1.46901 * 109.47342 * 240.00032 * 2 1 3 13 13 C 1.46902 * 110.99865 * 85.00233 * 12 2 1 14 14 H 1.09000 * 109.47263 * 324.99752 * 13 12 2 15 15 C 1.52997 * 109.47489 * 85.00085 * 13 12 2 16 16 C 1.50706 * 109.46577 * 204.99952 * 13 12 2 17 17 O 1.21279 * 120.00072 * 359.97438 * 16 13 12 18 18 N 1.34777 * 119.99762 * 179.97438 * 16 13 12 19 19 C 1.38795 * 120.00089 * 179.97438 * 18 16 13 20 20 S 1.70088 * 124.59769 * 359.70612 * 19 18 16 21 21 C 1.76331 * 92.71375 * 179.97438 * 20 19 18 22 22 C 1.33075 * 110.72699 * 0.29451 * 21 20 19 23 23 C 1.36312 * 124.59941 * 180.02562 * 19 18 16 24 24 C 1.43201 * 123.33294 * 359.94891 * 23 19 18 25 25 N 8.07356 * 94.56958 * 287.36524 * 2 1 3 26 26 C 1.52604 * 110.21626 * 179.81599 * 22 21 20 27 27 C 1.54187 * 104.91935 * 342.53260 * 26 22 21 28 28 C 1.52387 * 138.83116 * 180.02562 * 21 20 19 29 29 H 1.08999 * 109.47606 * 300.00097 * 1 2 3 30 30 H 1.09006 * 109.46736 * 60.00219 * 1 2 3 31 31 H 1.08995 * 109.47268 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00177 * 180.02562 * 7 6 4 33 33 H 1.00903 * 110.99792 * 321.04537 * 12 2 1 34 34 H 1.08992 * 109.47280 * 179.97438 * 15 13 12 35 35 H 1.09002 * 109.46777 * 300.00164 * 15 13 12 36 36 H 1.09000 * 109.47140 * 59.99592 * 15 13 12 37 37 H 0.96999 * 120.00047 * 0.02562 * 18 16 13 38 38 H 1.09002 * 110.35181 * 101.38682 * 26 22 21 39 39 H 1.08993 * 110.35650 * 223.66913 * 26 22 21 40 40 H 1.08997 * 110.99140 * 268.35142 * 27 26 22 41 41 H 1.08995 * 111.02509 * 144.53592 * 27 26 22 42 42 H 1.09005 * 110.35362 * 316.57112 * 28 21 20 43 43 H 1.08999 * 110.36089 * 78.75838 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1207 4.0082 10 1 1.8268 -0.4198 5.2204 11 1 1.8259 -2.5200 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.2577 0.9330 -2.2907 15 6 3.4111 0.9810 -2.3223 16 6 1.9787 -0.5677 -3.6259 17 8 1.8642 -1.7744 -3.5855 18 7 2.0132 0.0666 -4.8146 19 6 1.9181 -0.6613 -5.9925 20 16 1.7624 -2.3531 -6.0725 21 6 1.7187 -2.3497 -7.8353 22 6 1.8259 -1.1098 -8.3066 23 6 1.9431 -0.1178 -7.2424 24 6 2.0711 1.2874 -7.4870 25 7 2.1732 2.4020 -7.6811 26 6 1.7913 -1.1208 -9.8323 27 6 2.0935 -2.5807 -10.2257 28 6 1.5990 -3.3464 -8.9818 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7092 1.1618 3.4844 33 1 1.4496 -1.4979 -1.4100 34 1 3.4579 1.6596 -3.1739 35 1 3.4862 1.5525 -1.3972 36 1 4.2360 0.2706 -2.3785 37 1 2.1051 1.0317 -4.8469 38 1 0.8046 -0.8281 -10.1912 39 1 2.5547 -0.4543 -10.2336 40 1 3.1623 -2.7309 -10.3777 41 1 1.5303 -2.8713 -11.1125 42 1 2.2300 -4.2156 -8.7959 43 1 0.5610 -3.6530 -9.1110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:18 Heat of formation + Delta-G solvation = 12.431412 kcal Electronic energy + Delta-G solvation = -25377.492296 eV Core-core repulsion = 21741.641978 eV Total energy + Delta-G solvation = -3635.850318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83545 -40.30380 -38.17212 -37.71900 -36.76846 -35.00571 -34.13436 -32.25117 -29.30631 -28.88651 -28.36132 -27.25085 -26.00153 -24.75191 -22.68866 -21.79748 -21.49136 -20.27029 -19.59930 -19.09619 -18.19193 -17.34956 -17.03939 -16.99853 -16.61307 -16.45004 -16.04718 -15.55161 -15.07066 -14.65967 -14.64157 -14.53683 -14.30889 -13.76583 -13.71265 -13.58349 -13.45336 -13.29315 -13.24305 -12.99467 -12.90150 -12.86788 -12.80893 -12.65561 -12.36045 -12.22735 -12.13687 -12.05702 -11.94872 -11.81210 -11.18755 -11.08773 -10.84610 -10.46883 -9.34569 -9.14433 -9.03521 -8.09934 -6.19622 -0.42176 0.09996 0.89673 0.96169 1.22591 1.45004 1.46012 1.49492 1.53861 1.55628 2.34438 2.45017 2.97752 3.19428 3.32171 3.45216 3.48700 3.70959 4.04971 4.14108 4.15685 4.26906 4.33654 4.63875 4.65369 4.73592 4.75260 4.82141 4.85592 4.89470 4.95026 5.00310 5.07617 5.20468 5.25136 5.25699 5.35230 5.39241 5.43638 5.68729 5.72918 5.80930 6.24560 6.38356 6.52002 6.57256 6.71884 6.92449 7.49639 8.95567 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002495 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.013628 B =11220.339957 C =11961.155374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 H 0.018 0.982 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.671 5.671 13 C 0.073 3.927 14 H 0.077 0.923 15 C -0.131 4.131 16 C 0.519 3.481 17 O -0.509 6.509 18 N -0.624 5.624 19 C 0.052 3.948 20 S 0.331 5.669 21 C -0.266 4.266 22 C -0.083 4.083 23 C -0.111 4.111 24 C 0.292 3.708 25 N -0.458 5.458 26 C -0.061 4.061 27 C -0.109 4.109 28 C -0.040 4.040 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.340 0.660 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.427 0.573 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -6.256 -26.068 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.041 4.041 14 H 0.095 0.905 15 C -0.189 4.189 16 C 0.307 3.693 17 O -0.383 6.383 18 N -0.268 5.268 19 C -0.169 4.169 20 S 0.597 5.403 21 C -0.384 4.384 22 C -0.093 4.093 23 C -0.133 4.133 24 C -0.023 4.023 25 N -0.136 5.136 26 C -0.100 4.100 27 C -0.148 4.148 28 C -0.080 4.080 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.267 0.733 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.573 -6.319 -24.809 25.650 hybrid contribution -0.711 1.504 0.258 1.683 sum 0.863 -4.815 -24.551 25.034 Atomic orbital electron populations 1.22303 1.00166 0.99248 1.00325 1.19011 0.89792 0.93332 0.86763 0.96392 1.21351 1.30493 1.12493 0.90914 0.92865 1.25645 0.95471 0.95872 1.01677 1.69978 1.37891 1.24091 1.24072 0.85618 0.78679 0.78652 0.78688 1.19920 1.21049 1.19911 1.60789 1.58927 1.08751 1.02039 1.21520 1.00923 0.94717 0.86928 0.90532 1.21755 0.94570 0.99521 1.03024 1.21370 0.74287 0.88426 0.85206 1.90593 1.47410 1.14849 1.85487 1.42885 1.69981 1.11790 1.02184 1.21843 1.05279 1.01564 0.88201 1.84480 1.67698 0.91995 0.96149 1.26783 1.10622 1.00764 1.00191 1.21088 1.01595 0.89990 0.96670 1.15496 1.21395 0.85698 0.90737 1.25095 0.92175 0.91780 0.93214 1.81287 1.12096 1.12320 1.07870 1.21164 1.03150 0.99246 0.86470 1.22347 1.02723 0.92121 0.97610 1.20980 1.03249 0.95573 0.88172 0.91566 0.95488 0.95253 0.92973 0.84055 0.89801 0.91981 0.91913 0.73312 0.89096 0.90668 0.90055 0.87697 0.89452 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.92 71.98 0.64 -6.85 16 2 C 0.22 10.57 2.38 44.17 0.11 10.68 16 3 H 0.02 0.94 7.11 -2.39 -0.02 0.92 16 4 C -0.51 -27.94 8.84 25.60 0.23 -27.71 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -51.70 11.32 21.45 0.24 -51.46 16 8 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.67 -27.46 5.92 -477.15 -2.82 -30.28 16 13 C 0.07 2.30 2.84 44.17 0.13 2.42 16 14 H 0.08 2.36 7.11 -2.39 -0.02 2.34 16 15 C -0.13 -3.69 9.30 71.98 0.67 -3.02 16 16 C 0.52 14.83 7.14 87.66 0.63 15.46 16 17 O -0.51 -16.64 13.07 -3.03 -0.04 -16.68 16 18 N -0.62 -14.41 5.26 -309.79 -1.63 -16.04 16 19 C 0.05 1.19 6.94 83.14 0.58 1.76 16 20 S 0.33 7.05 19.96 -56.49 -1.13 5.93 16 21 C -0.27 -4.41 7.30 25.07 0.18 -4.23 16 22 C -0.08 -1.46 6.64 -18.40 -0.12 -1.58 16 23 C -0.11 -2.38 5.89 -20.48 -0.12 -2.50 16 24 C 0.29 6.92 14.92 88.33 1.32 8.24 16 25 N -0.46 -12.37 18.54 19.00 0.35 -12.02 16 26 C -0.06 -0.72 6.81 30.86 0.21 -0.51 16 27 C -0.11 -0.79 7.13 31.41 0.22 -0.57 16 28 C -0.04 -0.39 6.81 30.80 0.21 -0.18 16 29 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 30 H 0.03 1.08 7.43 -2.38 -0.02 1.06 16 31 H 0.03 1.32 8.13 -2.39 -0.02 1.31 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.34 14.09 7.19 -89.69 -0.64 13.45 16 34 H 0.08 1.73 7.56 -2.39 -0.02 1.71 16 35 H 0.06 2.00 7.43 -2.39 -0.02 1.98 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.43 8.35 7.53 -92.71 -0.70 7.65 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -63.71 370.75 2.05 -61.66 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.27 Total: 20.85 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.32 Total: -7.50 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.86 Total: -109.80 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.04 Total: -16.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.13 Total: 5.93 kcal Total: -63.71 2.05 -61.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.089 kcal (2) G-P(sol) polarization free energy of solvation -63.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds