Wall clock time and date at job start Tue Mar 31 2020 18:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 N 1.46900 * 109.46834 * 119.99652 * 2 1 3 5 5 C 1.46898 * 111.00124 * 272.85580 * 4 2 1 6 6 H 1.09001 * 109.47235 * 33.13094 * 5 4 2 7 7 C 1.52998 * 109.47527 * 153.13548 * 5 4 2 8 8 C 1.50705 * 109.46769 * 273.13303 * 5 4 2 9 9 H 1.07994 * 120.00458 * 359.97438 * 8 5 4 10 10 C 1.37881 * 119.99852 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99946 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00009 * 179.97438 * 10 8 5 13 13 H 1.48509 * 109.46843 * 90.00104 * 12 10 8 14 14 H 1.48497 * 109.47218 * 210.00338 * 12 10 8 15 15 H 1.48505 * 109.47051 * 330.00356 * 12 10 8 16 16 C 1.50698 * 109.47203 * 239.99212 * 2 1 3 17 17 O 1.21280 * 120.00437 * 240.00626 * 16 2 1 18 18 N 1.34777 * 119.99622 * 60.00206 * 16 2 1 19 19 C 1.38799 * 120.00154 * 179.97438 * 18 16 2 20 20 S 1.70093 * 124.59703 * 0.02707 * 19 18 16 21 21 C 1.76333 * 92.71198 * 179.97438 * 20 19 18 22 22 C 1.33073 * 110.72855 * 0.02562 * 21 20 19 23 23 C 1.36309 * 124.60007 * 179.71926 * 19 18 16 24 24 C 1.43208 * 123.33441 * 0.02562 * 23 19 18 25 25 N 5.76289 * 79.11327 * 285.47952 * 2 1 3 26 26 C 1.52606 * 110.21496 * 179.97438 * 22 21 20 27 27 C 1.54178 * 104.91742 * 17.47816 * 26 22 21 28 28 C 1.52386 * 138.82848 * 180.02562 * 21 20 19 29 29 H 1.08997 * 109.46853 * 303.92239 * 1 2 3 30 30 H 1.09000 * 109.46797 * 63.91941 * 1 2 3 31 31 H 1.09001 * 109.46912 * 183.92639 * 1 2 3 32 32 H 1.00904 * 111.00139 * 36.80648 * 4 2 1 33 33 H 1.08998 * 109.47008 * 59.63508 * 7 5 4 34 34 H 1.09001 * 109.47618 * 179.63541 * 7 5 4 35 35 H 1.08998 * 109.47122 * 299.63553 * 7 5 4 36 36 H 0.97004 * 119.99483 * 179.97438 * 11 10 8 37 37 H 0.97010 * 119.99864 * 0.02562 * 18 16 2 38 38 H 1.09003 * 110.34995 * 136.33135 * 26 22 21 39 39 H 1.08992 * 110.35158 * 258.50757 * 26 22 21 40 40 H 1.09004 * 110.99906 * 91.64282 * 27 26 22 41 41 H 1.08999 * 110.99655 * 215.43488 * 27 26 22 42 42 H 1.09002 * 110.35538 * 281.42092 * 28 21 20 43 43 H 1.08997 * 110.35705 * 43.71360 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.1307 0.2343 2.3339 6 1 1.3470 0.9887 2.2648 7 6 1.9775 -0.5419 3.6435 8 6 3.4792 0.9065 2.3032 9 1 4.1834 0.6687 1.5197 10 6 3.8139 1.8250 3.2754 11 7 2.9565 2.1142 4.2299 12 14 5.4856 2.6577 3.2378 13 1 5.3987 3.9066 2.4389 14 1 5.9070 2.9849 4.6237 15 1 6.4802 1.7436 2.6208 16 6 2.0324 -0.7106 -1.2303 17 8 2.7296 -1.6967 -1.1190 18 7 1.7068 -0.2502 -2.4545 19 6 2.1699 -0.9042 -3.5877 20 16 3.1518 -2.2930 -3.5679 21 6 3.2118 -2.3779 -5.3282 22 6 2.5110 -1.3858 -5.8717 23 6 1.8945 -0.5243 -4.8675 24 6 1.0843 0.6103 -5.1945 25 7 0.4416 1.5104 -5.4539 26 6 2.5713 -1.4701 -7.3943 27 6 3.0398 -2.9081 -7.6939 28 6 3.8286 -3.2511 -6.4141 29 1 -0.3633 0.5735 0.8527 30 1 -0.3633 0.4518 -0.9230 31 1 -0.3633 -1.0253 0.0704 32 1 1.4291 -1.4773 1.4303 33 1 2.7573 -1.3005 3.7095 34 1 2.0664 0.1447 4.4854 35 1 0.9997 -1.0228 3.6685 36 1 3.1922 2.7602 4.9141 37 1 1.1494 0.5388 -2.5435 38 1 1.5843 -1.2960 -7.8229 39 1 3.2868 -0.7472 -7.7859 40 1 2.1890 -3.5779 -7.8196 41 1 3.6868 -2.9334 -8.5707 42 1 4.8835 -3.0081 -6.5423 43 1 3.7090 -4.3057 -6.1661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:23 Heat of formation + Delta-G solvation = 31.098580 kcal Electronic energy + Delta-G solvation = -25515.863335 eV Core-core repulsion = 21880.822486 eV Total energy + Delta-G solvation = -3635.040849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47886 -39.40676 -36.97949 -36.33797 -35.54693 -33.45814 -32.87534 -30.64623 -28.60235 -27.70840 -27.03191 -25.24107 -24.90729 -23.60461 -21.40141 -20.75054 -20.37305 -19.32686 -18.47186 -17.61760 -16.32779 -16.14366 -15.99723 -15.78406 -15.41851 -14.82772 -14.60732 -14.14146 -13.78720 -13.72395 -13.61160 -13.31732 -13.04841 -12.78293 -12.70765 -12.53895 -12.43852 -12.24906 -12.11916 -12.00458 -11.52382 -11.45259 -11.41254 -11.27007 -10.99537 -10.90701 -10.73012 -10.42574 -10.34747 -10.25072 -10.00519 -9.58585 -9.23289 -8.46907 -8.37640 -8.08693 -7.44201 -6.05481 -4.09691 0.64495 1.06366 1.78563 1.90833 2.58013 2.59793 2.71182 3.28243 3.35561 3.39584 3.41096 4.01264 4.20714 4.36733 4.38848 4.71899 4.73196 4.81021 4.95178 5.19360 5.26491 5.27253 5.30144 5.42555 5.43129 5.49703 5.55226 5.68156 5.73340 5.78285 5.89727 5.98242 6.11738 6.15374 6.17945 6.65318 6.83582 6.89056 6.94416 7.26812 7.45884 7.64872 7.82615 7.89858 8.08595 8.25504 8.57222 8.98367 9.56396 11.00605 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002823 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.663434 B = 9917.582178 C =10076.676453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.118 0.882 4 N -0.661 5.661 5 C 0.214 3.786 6 H 0.007 0.993 7 C -0.144 4.144 8 C -0.498 4.498 9 H 0.062 0.938 10 C 0.057 3.943 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.514 3.486 17 O -0.473 6.473 18 N -0.639 5.639 19 C 0.075 3.925 20 S 0.351 5.649 21 C -0.283 4.283 22 C -0.067 4.067 23 C -0.121 4.121 24 C 0.280 3.720 25 N -0.434 5.434 26 C -0.059 4.059 27 C -0.118 4.118 28 C -0.037 4.037 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.327 0.673 33 H 0.037 0.963 34 H 0.091 0.909 35 H 0.007 0.993 36 H 0.260 0.740 37 H 0.418 0.582 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -9.995 -19.811 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 H 0.136 0.864 4 N -0.292 5.292 5 C 0.108 3.892 6 H 0.024 0.976 7 C -0.202 4.202 8 C -0.537 4.537 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.301 3.699 17 O -0.344 6.344 18 N -0.284 5.284 19 C -0.147 4.147 20 S 0.615 5.385 21 C -0.400 4.400 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.036 4.036 25 N -0.111 5.111 26 C -0.098 4.098 27 C -0.156 4.156 28 C -0.076 4.076 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.869 -10.001 -18.782 21.360 hybrid contribution -0.823 1.903 -0.737 2.200 sum -2.692 -8.098 -19.519 21.303 Atomic orbital electron populations 1.22533 0.95518 1.02768 1.03005 1.21333 0.93065 0.99491 0.89320 0.86428 1.60336 1.53765 1.11010 1.04081 1.19238 0.96746 0.88760 0.84488 0.97573 1.21952 0.96247 0.99942 1.02090 1.21197 1.00220 1.21357 1.10934 0.91939 1.24946 0.97208 0.96797 0.95439 1.69871 1.35120 1.34224 1.14384 0.86540 0.84352 0.79639 0.77173 1.20843 1.21265 1.19769 1.21916 0.79551 0.84767 0.83682 1.90572 1.34741 1.24984 1.84087 1.43368 1.51078 1.30802 1.03179 1.21778 1.02277 1.01705 0.88930 1.84456 1.42823 1.16703 0.94518 1.26475 1.08117 1.04325 1.01052 1.20701 0.97722 0.93856 0.95615 1.15288 1.10425 0.98482 0.90045 1.25001 0.92501 0.92130 0.93943 1.81260 1.11498 1.11323 1.07063 1.21015 1.02130 0.97664 0.89033 1.22307 1.00196 0.95781 0.97345 1.20757 0.99041 0.98011 0.89816 0.90473 0.92570 0.92010 0.85525 0.94379 0.89023 0.97431 0.92973 0.74479 0.90880 0.90016 0.90615 0.90107 0.90117 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.10 37.16 0.34 -1.99 16 2 C 0.08 1.36 2.79 -68.86 -0.19 1.16 16 3 H 0.12 2.08 7.68 -51.93 -0.40 1.68 16 4 N -0.66 -13.12 5.55 -102.17 -0.57 -13.68 16 5 C 0.21 5.01 2.41 -68.86 -0.17 4.85 16 6 H 0.01 0.16 7.31 -51.93 -0.38 -0.22 16 7 C -0.14 -3.30 8.94 37.16 0.33 -2.97 16 8 C -0.50 -13.26 8.60 -34.44 -0.30 -13.55 16 9 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 10 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 11 N -0.90 -24.74 11.32 55.43 0.63 -24.11 16 12 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.51 8.00 7.19 -10.99 -0.08 7.93 16 17 O -0.47 -8.46 13.85 5.56 0.08 -8.38 16 18 N -0.64 -8.30 5.23 -11.85 -0.06 -8.37 16 19 C 0.08 0.97 6.94 -15.09 -0.10 0.86 16 20 S 0.35 4.24 19.96 -107.50 -2.15 2.09 16 21 C -0.28 -2.86 7.30 -35.27 -0.26 -3.12 16 22 C -0.07 -0.72 6.64 -102.37 -0.68 -1.40 16 23 C -0.12 -1.48 5.89 -105.57 -0.62 -2.10 16 24 C 0.28 3.70 14.93 -22.47 -0.34 3.36 16 25 N -0.43 -6.39 18.54 41.84 0.78 -5.61 16 26 C -0.06 -0.47 6.81 -26.32 -0.18 -0.65 16 27 C -0.12 -0.70 7.13 -25.48 -0.18 -0.88 16 28 C -0.04 -0.26 6.81 -26.41 -0.18 -0.44 16 29 H 0.08 1.07 7.66 -51.93 -0.40 0.67 16 30 H 0.06 0.60 7.46 -51.93 -0.39 0.21 16 31 H 0.06 0.75 8.06 -51.93 -0.42 0.34 16 32 H 0.33 5.96 7.98 -39.29 -0.31 5.65 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 35 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.42 4.72 7.48 -40.82 -0.31 4.41 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -30.06 373.01 -9.23 -39.30 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.84 Total: 4.55 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.70 Total: -7.52 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.77 Total: -51.77 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.15 Total: 2.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.06 -9.23 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.395 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds