Wall clock time and date at job start Tue Mar 31 2020 18:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 N 1.46900 * 109.46834 * 119.99652 * 2 1 3 5 5 C 1.46898 * 111.00124 * 272.85580 * 4 2 1 6 6 H 1.09001 * 109.47235 * 33.13094 * 5 4 2 7 7 C 1.52998 * 109.47527 * 153.13548 * 5 4 2 8 8 C 1.50705 * 109.46769 * 273.13303 * 5 4 2 9 9 H 1.07994 * 120.00458 * 359.97438 * 8 5 4 10 10 C 1.37881 * 119.99852 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99946 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00009 * 179.97438 * 10 8 5 13 13 H 1.48509 * 109.46843 * 90.00104 * 12 10 8 14 14 H 1.48497 * 109.47218 * 210.00338 * 12 10 8 15 15 H 1.48505 * 109.47051 * 330.00356 * 12 10 8 16 16 C 1.50698 * 109.47203 * 239.99212 * 2 1 3 17 17 O 1.21280 * 120.00437 * 240.00626 * 16 2 1 18 18 N 1.34777 * 119.99622 * 60.00206 * 16 2 1 19 19 C 1.38799 * 120.00154 * 179.97438 * 18 16 2 20 20 S 1.70093 * 124.59703 * 0.02707 * 19 18 16 21 21 C 1.76333 * 92.71198 * 179.97438 * 20 19 18 22 22 C 1.33073 * 110.72855 * 0.02562 * 21 20 19 23 23 C 1.36309 * 124.60007 * 179.71926 * 19 18 16 24 24 C 1.43208 * 123.33441 * 0.02562 * 23 19 18 25 25 N 5.76289 * 79.11327 * 285.47952 * 2 1 3 26 26 C 1.52606 * 110.21496 * 179.97438 * 22 21 20 27 27 C 1.54178 * 104.91742 * 17.47816 * 26 22 21 28 28 C 1.52386 * 138.82848 * 180.02562 * 21 20 19 29 29 H 1.08997 * 109.46853 * 303.92239 * 1 2 3 30 30 H 1.09000 * 109.46797 * 63.91941 * 1 2 3 31 31 H 1.09001 * 109.46912 * 183.92639 * 1 2 3 32 32 H 1.00904 * 111.00139 * 36.80648 * 4 2 1 33 33 H 1.08998 * 109.47008 * 59.63508 * 7 5 4 34 34 H 1.09001 * 109.47618 * 179.63541 * 7 5 4 35 35 H 1.08998 * 109.47122 * 299.63553 * 7 5 4 36 36 H 0.97004 * 119.99483 * 179.97438 * 11 10 8 37 37 H 0.97010 * 119.99864 * 0.02562 * 18 16 2 38 38 H 1.09003 * 110.34995 * 136.33135 * 26 22 21 39 39 H 1.08992 * 110.35158 * 258.50757 * 26 22 21 40 40 H 1.09004 * 110.99906 * 91.64282 * 27 26 22 41 41 H 1.08999 * 110.99655 * 215.43488 * 27 26 22 42 42 H 1.09002 * 110.35538 * 281.42092 * 28 21 20 43 43 H 1.08997 * 110.35705 * 43.71360 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.1307 0.2343 2.3339 6 1 1.3470 0.9887 2.2648 7 6 1.9775 -0.5419 3.6435 8 6 3.4792 0.9065 2.3032 9 1 4.1834 0.6687 1.5197 10 6 3.8139 1.8250 3.2754 11 7 2.9565 2.1142 4.2299 12 14 5.4856 2.6577 3.2378 13 1 5.3987 3.9066 2.4389 14 1 5.9070 2.9849 4.6237 15 1 6.4802 1.7436 2.6208 16 6 2.0324 -0.7106 -1.2303 17 8 2.7296 -1.6967 -1.1190 18 7 1.7068 -0.2502 -2.4545 19 6 2.1699 -0.9042 -3.5877 20 16 3.1518 -2.2930 -3.5679 21 6 3.2118 -2.3779 -5.3282 22 6 2.5110 -1.3858 -5.8717 23 6 1.8945 -0.5243 -4.8675 24 6 1.0843 0.6103 -5.1945 25 7 0.4416 1.5104 -5.4539 26 6 2.5713 -1.4701 -7.3943 27 6 3.0398 -2.9081 -7.6939 28 6 3.8286 -3.2511 -6.4141 29 1 -0.3633 0.5735 0.8527 30 1 -0.3633 0.4518 -0.9230 31 1 -0.3633 -1.0253 0.0704 32 1 1.4291 -1.4773 1.4303 33 1 2.7573 -1.3005 3.7095 34 1 2.0664 0.1447 4.4854 35 1 0.9997 -1.0228 3.6685 36 1 3.1922 2.7602 4.9141 37 1 1.1494 0.5388 -2.5435 38 1 1.5843 -1.2960 -7.8229 39 1 3.2868 -0.7472 -7.7859 40 1 2.1890 -3.5779 -7.8196 41 1 3.6868 -2.9334 -8.5707 42 1 4.8835 -3.0081 -6.5423 43 1 3.7090 -4.3057 -6.1661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:22 Heat of formation + Delta-G solvation = 13.278606 kcal Electronic energy + Delta-G solvation = -25516.636067 eV Core-core repulsion = 21880.822486 eV Total energy + Delta-G solvation = -3635.813581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64998 -40.25144 -38.15089 -37.72335 -36.67743 -35.03322 -34.07217 -32.30081 -29.29360 -28.81148 -28.26210 -27.25971 -25.98521 -24.69395 -22.46804 -22.05809 -21.68768 -20.20677 -19.44090 -18.80825 -18.20417 -17.25701 -17.10112 -16.69395 -16.64260 -16.29374 -15.86986 -15.62348 -15.12890 -14.96821 -14.64358 -14.53175 -14.28864 -14.02240 -13.65546 -13.53993 -13.45605 -13.33152 -13.24565 -12.88655 -12.86049 -12.85429 -12.65488 -12.50829 -12.29843 -12.19201 -12.13760 -11.97480 -11.94035 -11.79828 -11.20117 -11.14362 -10.74689 -10.51005 -9.32277 -9.07858 -9.00650 -8.10210 -6.20951 -0.36316 0.13655 0.92645 1.00413 1.38667 1.39461 1.42256 1.52039 1.54570 1.60108 2.36393 2.42532 3.00613 3.16886 3.37544 3.52702 3.60288 3.72765 4.00384 4.15979 4.18171 4.27491 4.37562 4.60636 4.68203 4.72751 4.80811 4.85124 4.90931 4.96897 4.97931 5.01095 5.06499 5.10376 5.22480 5.26676 5.40300 5.42148 5.44276 5.69574 5.83944 5.84754 6.28300 6.39101 6.40206 6.73811 6.88591 6.91442 7.48544 8.93622 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002823 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.663434 B = 9917.582178 C =10076.676453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.101 0.899 4 N -0.671 5.671 5 C 0.222 3.778 6 H -0.010 1.010 7 C -0.135 4.135 8 C -0.513 4.513 9 H 0.046 0.954 10 C 0.015 3.985 11 N -0.917 5.917 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.275 1.275 16 C 0.520 3.480 17 O -0.500 6.500 18 N -0.630 5.630 19 C 0.057 3.943 20 S 0.327 5.673 21 C -0.269 4.269 22 C -0.083 4.083 23 C -0.117 4.117 24 C 0.294 3.706 25 N -0.460 5.460 26 C -0.061 4.061 27 C -0.108 4.108 28 C -0.040 4.040 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.336 0.664 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.261 0.739 37 H 0.425 0.575 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -10.880 -22.061 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.033 4.033 3 H 0.119 0.881 4 N -0.302 5.302 5 C 0.114 3.886 6 H 0.007 0.993 7 C -0.194 4.194 8 C -0.552 4.552 9 H 0.064 0.936 10 C -0.184 4.184 11 N -0.557 5.557 12 Si 0.776 3.224 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.307 3.693 17 O -0.373 6.373 18 N -0.275 5.275 19 C -0.164 4.164 20 S 0.593 5.407 21 C -0.386 4.386 22 C -0.093 4.093 23 C -0.139 4.139 24 C -0.021 4.021 25 N -0.138 5.138 26 C -0.100 4.100 27 C -0.147 4.147 28 C -0.079 4.079 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.264 0.736 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.707 -10.883 -21.064 23.771 hybrid contribution -0.874 2.136 -0.151 2.313 sum -2.581 -8.747 -21.215 23.093 Atomic orbital electron populations 1.22424 0.92676 1.03684 1.04001 1.21314 0.95329 0.98240 0.88447 0.88149 1.60123 1.55197 1.10941 1.03986 1.18968 0.94643 0.88908 0.86051 0.99280 1.21788 0.97643 0.99120 1.00806 1.21425 1.01343 1.21913 1.10475 0.93599 1.25585 1.00109 0.97417 0.95255 1.69973 1.36397 1.34620 1.14754 0.85687 0.80770 0.78720 0.77239 1.20256 1.20766 1.20009 1.21569 0.79237 0.84368 0.84114 1.90572 1.35891 1.26125 1.84752 1.43059 1.50919 1.30861 1.02663 1.21862 1.03381 1.02381 0.88811 1.84513 1.42815 1.16630 0.96789 1.26798 1.07372 1.04550 0.99893 1.21084 0.97642 0.93498 0.97123 1.15494 1.09906 0.98133 0.90368 1.25105 0.92008 0.91878 0.93132 1.81271 1.12392 1.12120 1.08055 1.21159 1.02691 0.99356 0.86799 1.22342 1.00642 0.94271 0.97448 1.20971 0.99703 0.98172 0.89082 0.91343 0.89959 0.90820 0.84484 0.95041 0.91616 0.94559 0.92944 0.73628 0.90639 0.89249 0.89931 0.87733 0.88879 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 9.10 71.98 0.66 -3.58 16 2 C 0.08 2.67 2.79 44.17 0.12 2.79 16 3 H 0.10 3.65 7.68 -2.39 -0.02 3.63 16 4 N -0.67 -26.83 5.55 -477.15 -2.65 -29.47 16 5 C 0.22 10.55 2.41 44.17 0.11 10.65 16 6 H -0.01 -0.52 7.31 -2.39 -0.02 -0.54 16 7 C -0.14 -6.24 8.94 71.98 0.64 -5.59 16 8 C -0.51 -27.81 8.60 25.60 0.22 -27.59 16 9 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 10 C 0.02 0.81 5.30 84.66 0.45 1.26 16 11 N -0.92 -51.24 11.32 21.45 0.24 -50.99 16 12 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 C 0.52 16.20 7.19 87.66 0.63 16.83 16 17 O -0.50 -18.02 13.85 -3.03 -0.04 -18.06 16 18 N -0.63 -16.14 5.23 -309.79 -1.62 -17.76 16 19 C 0.06 1.43 6.94 83.14 0.58 2.01 16 20 S 0.33 7.73 19.96 -56.49 -1.13 6.60 16 21 C -0.27 -4.94 7.30 25.07 0.18 -4.76 16 22 C -0.08 -1.61 6.64 -18.40 -0.12 -1.73 16 23 C -0.12 -2.74 5.89 -20.48 -0.12 -2.86 16 24 C 0.29 7.50 14.93 88.33 1.32 8.81 16 25 N -0.46 -13.21 18.54 19.01 0.35 -12.86 16 26 C -0.06 -0.80 6.81 30.86 0.21 -0.59 16 27 C -0.11 -0.91 7.13 31.40 0.22 -0.68 16 28 C -0.04 -0.45 6.81 30.80 0.21 -0.24 16 29 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 30 H 0.08 1.62 7.46 -2.39 -0.02 1.61 16 31 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 32 H 0.34 12.16 7.98 -89.69 -0.72 11.45 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 3.39 6.06 -2.39 -0.01 3.37 16 35 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 36 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.42 9.36 7.48 -92.70 -0.69 8.67 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -65.00 373.01 2.15 -62.85 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.34 Total: 19.23 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.31 Total: -5.27 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.67 Total: -111.08 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.04 Total: -18.06 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.13 Total: 6.60 kcal Total: -65.00 2.15 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.131 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds