Wall clock time and date at job start Tue Mar 31 2020 18:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47226 * 2 1 4 4 C 1.50708 * 109.46802 * 240.00598 * 2 1 3 5 5 H 1.08004 * 119.99758 * 245.37378 * 4 2 1 6 6 C 1.37871 * 120.00151 * 65.37407 * 4 2 1 7 7 N 1.31515 * 120.00255 * 184.88942 * 6 4 2 8 8 Si 1.86805 * 120.00036 * 5.16628 * 6 4 2 9 9 H 1.48497 * 109.47004 * 269.72193 * 8 6 4 10 10 H 1.48503 * 109.46903 * 29.72486 * 8 6 4 11 11 H 1.48498 * 109.46970 * 149.72467 * 8 6 4 12 12 N 1.46904 * 109.47076 * 120.00879 * 2 1 3 13 13 C 1.46899 * 110.99588 * 274.99504 * 12 2 1 14 14 C 1.50700 * 109.46974 * 180.02562 * 13 12 2 15 15 O 1.21277 * 119.99884 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99948 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99962 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46832 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.46696 * 179.97438 * 18 17 16 20 20 N 1.27939 * 124.23654 * 89.70335 * 19 18 17 21 21 C 1.34657 * 117.84807 * 179.81072 * 20 19 18 22 22 C 1.40967 * 129.69230 * 180.17549 * 21 20 19 23 23 C 1.36172 * 120.42870 * 180.33455 * 22 21 20 24 24 C 1.38792 * 120.77932 * 359.96471 * 23 22 21 25 25 C 1.37649 * 120.06557 * 0.02562 * 24 23 22 26 26 C 1.39341 * 119.95712 * 0.02562 * 25 24 23 27 27 S 1.70645 * 124.24203 * 270.00169 * 19 18 17 28 28 H 1.09000 * 109.46670 * 294.97707 * 1 2 3 29 29 H 1.09000 * 109.47265 * 54.97579 * 1 2 3 30 30 H 1.08997 * 109.47139 * 174.97824 * 1 2 3 31 31 H 0.97000 * 119.99720 * 355.27241 * 7 6 4 32 32 H 1.00907 * 110.99831 * 151.04769 * 12 2 1 33 33 H 1.08999 * 109.47413 * 300.00530 * 13 12 2 34 34 H 1.09001 * 109.47121 * 59.99993 * 13 12 2 35 35 H 0.97004 * 119.99697 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.46639 * 299.99956 * 17 16 14 37 37 H 1.08996 * 109.46930 * 59.99918 * 17 16 14 38 38 H 1.08995 * 109.47464 * 299.99708 * 18 17 16 39 39 H 1.09002 * 109.47111 * 60.00502 * 18 17 16 40 40 H 1.08005 * 119.78314 * 0.32221 * 22 21 20 41 41 H 1.07999 * 119.61047 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.96710 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.02439 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5797 -1.6363 -1.1340 6 6 1.7930 -0.1781 -2.4797 7 7 2.1461 -0.8445 -3.5572 8 14 0.9741 1.4931 -2.6418 9 1 -0.4987 1.3177 -2.7140 10 1 1.3161 2.3282 -1.4624 11 1 1.4542 2.1617 -3.8778 12 7 2.0197 -0.6927 1.1994 13 6 2.0825 0.2223 2.3469 14 6 2.5886 -0.5219 3.5556 15 8 2.8696 -1.6985 3.4695 16 7 2.7288 0.1201 4.7324 17 6 3.2212 -0.6033 5.9073 18 6 3.2866 0.3497 7.1025 19 6 3.7926 -0.3945 8.3112 20 7 5.0279 -0.4988 8.6273 21 6 5.3362 -1.1920 9.7398 22 6 6.5954 -1.4577 10.3151 23 6 6.6908 -2.1952 11.4557 24 6 5.5542 -2.6981 12.0735 25 6 4.3113 -2.4544 11.5344 26 6 4.1944 -1.7026 10.3671 27 16 2.7902 -1.2100 9.4258 28 1 -0.3633 0.4339 0.9316 29 1 -0.3634 0.5898 -0.8416 30 1 -0.3633 -1.0237 -0.0900 31 1 2.6358 -1.6776 -3.4734 32 1 2.9174 -1.1207 1.0286 33 1 2.7589 1.0459 2.1182 34 1 1.0871 0.6161 2.5525 35 1 2.5036 1.0611 4.8013 36 1 2.5457 -1.4276 6.1359 37 1 4.2169 -0.9959 5.7013 38 1 3.9623 1.1738 6.8736 39 1 2.2910 0.7427 7.3087 40 1 7.4904 -1.0738 9.8479 41 1 7.6623 -2.3911 11.8849 42 1 5.6450 -3.2811 12.9780 43 1 3.4274 -2.8463 12.0154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:07 Heat of formation + Delta-G solvation = 19.053344 kcal Electronic energy + Delta-G solvation = -24102.081730 eV Core-core repulsion = 20466.518560 eV Total energy + Delta-G solvation = -3635.563170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82885 -39.54386 -37.71377 -36.02508 -35.24556 -32.58271 -32.17378 -31.60657 -29.99180 -29.14142 -26.34649 -25.01662 -24.28346 -23.49477 -22.64571 -21.22253 -20.33301 -19.67569 -18.98573 -17.74571 -17.19189 -16.68293 -16.43107 -15.91128 -15.76446 -15.51682 -15.14350 -14.91431 -14.41281 -14.29920 -13.98232 -13.58943 -13.46379 -13.19593 -12.93089 -12.82385 -12.50494 -12.45270 -12.02723 -11.92749 -11.82634 -11.64027 -11.34000 -11.33311 -10.99038 -10.60169 -10.44930 -10.08792 -10.02911 -9.77148 -9.57423 -9.14254 -9.10094 -8.67013 -8.58599 -8.46750 -7.53433 -6.43446 -4.09286 -0.07427 0.65813 0.77401 1.26434 1.85691 2.85909 2.97711 3.22213 3.36287 3.40578 3.50360 3.56908 4.11502 4.36437 4.45215 4.46920 4.52575 4.57529 4.72031 4.82828 4.99169 5.03137 5.14002 5.16845 5.31197 5.37006 5.49631 5.63181 5.67681 5.69459 5.71007 5.72971 5.88309 6.19596 6.33467 6.39337 6.55820 6.70650 6.79524 7.16517 7.42725 7.44157 7.68670 8.06716 8.35794 8.40644 8.47762 8.94613 9.61725 10.96662 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.001689 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.304206 B =16572.706783 C =16820.764627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.596 4.596 5 H 0.062 0.938 6 C 0.027 3.973 7 N -0.912 5.912 8 Si 1.060 2.940 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.291 1.291 12 N -0.664 5.664 13 C 0.041 3.959 14 C 0.514 3.486 15 O -0.520 6.520 16 N -0.740 5.740 17 C 0.129 3.871 18 C -0.061 4.061 19 C 0.099 3.901 20 N -0.462 5.462 21 C 0.083 3.917 22 C -0.063 4.063 23 C -0.107 4.107 24 C -0.102 4.102 25 C -0.072 4.072 26 C -0.185 4.185 27 S 0.110 5.890 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.347 0.653 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 3.451 35.137 35.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 H 0.020 0.980 4 C -0.634 4.634 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.890 3.110 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.217 1.217 12 N -0.298 5.298 13 C -0.092 4.092 14 C 0.300 3.700 15 O -0.394 6.394 16 N -0.395 5.395 17 C 0.003 3.997 18 C -0.102 4.102 19 C -0.187 4.187 20 N -0.175 5.175 21 C -0.038 4.038 22 C -0.084 4.084 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.304 4.304 27 S 0.367 5.633 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.570 3.543 33.776 34.058 hybrid contribution 2.072 -0.296 1.329 2.479 sum 4.642 3.247 35.105 35.559 Atomic orbital electron populations 1.22031 0.98483 1.01178 0.97655 1.19652 0.92030 0.92952 0.88112 0.98016 1.22173 1.39777 1.10409 0.91068 0.91946 1.25761 0.96550 1.03567 0.91886 1.70796 1.36673 1.16946 1.30237 0.83785 0.76354 0.75506 0.75372 1.20992 1.20772 1.21744 1.60322 1.34078 1.31204 1.04159 1.21860 1.01348 0.95052 0.90973 1.21020 0.77107 0.87848 0.83977 1.90706 1.48263 1.15971 1.84415 1.45962 1.69677 1.14179 1.09727 1.21152 1.00974 0.94168 0.83399 1.20563 1.02800 0.98004 0.88825 1.26381 0.91145 1.00408 1.00728 1.66172 1.18146 1.17943 1.15237 1.19194 0.94513 0.98363 0.91694 1.20440 0.94806 0.97825 0.95303 1.20767 0.99361 0.97449 0.95234 1.21172 0.91686 0.99481 1.00058 1.20374 0.98630 0.97256 0.93161 1.23940 0.96444 1.07211 1.02764 1.84058 1.08689 1.50909 1.19623 0.95763 0.94124 0.92547 0.92194 0.83330 0.93087 0.88761 0.76585 0.91127 0.90821 0.87551 0.88360 0.84669 0.84643 0.84644 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.03 37.16 0.34 -2.67 16 2 C 0.18 4.34 2.18 -68.86 -0.15 4.19 16 3 H 0.00 0.06 6.30 -51.93 -0.33 -0.27 16 4 C -0.60 -16.97 8.92 -34.44 -0.31 -17.27 16 5 H 0.06 1.94 7.90 -52.48 -0.41 1.52 16 6 C 0.03 0.78 5.43 -17.82 -0.10 0.69 16 7 N -0.91 -28.34 13.70 55.43 0.76 -27.58 16 8 Si 1.06 25.45 25.28 -169.99 -4.30 21.15 16 9 H -0.28 -6.48 6.82 56.52 0.39 -6.09 16 10 H -0.28 -6.21 6.35 56.52 0.36 -5.85 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.66 -14.42 5.93 -109.22 -0.65 -15.07 16 13 C 0.04 0.67 5.96 -4.98 -0.03 0.64 16 14 C 0.51 8.11 7.87 -10.98 -0.09 8.02 16 15 O -0.52 -10.58 16.20 5.56 0.09 -10.49 16 16 N -0.74 -7.99 5.56 -60.29 -0.33 -8.33 16 17 C 0.13 1.33 5.66 -4.04 -0.02 1.30 16 18 C -0.06 -0.44 5.89 -27.88 -0.16 -0.61 16 19 C 0.10 0.93 6.54 -13.90 -0.09 0.84 16 20 N -0.46 -5.25 10.57 -9.08 -0.10 -5.34 16 21 C 0.08 0.87 7.00 -84.96 -0.59 0.28 16 22 C -0.06 -0.52 10.05 -39.29 -0.39 -0.91 16 23 C -0.11 -0.64 9.94 -40.12 -0.40 -1.04 16 24 C -0.10 -0.57 10.04 -39.59 -0.40 -0.97 16 25 C -0.07 -0.50 10.07 -39.39 -0.40 -0.90 16 26 C -0.18 -1.72 6.56 -38.54 -0.25 -1.98 16 27 S 0.11 0.93 23.11 -107.50 -2.48 -1.56 16 28 H 0.02 0.45 7.35 -51.93 -0.38 0.07 16 29 H 0.04 0.90 4.41 -51.93 -0.23 0.67 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.27 8.34 8.72 -40.82 -0.36 7.98 16 32 H 0.35 8.01 7.96 -39.29 -0.31 7.70 16 33 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 34 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 35 H 0.40 2.91 8.47 -40.82 -0.35 2.57 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -35.87 371.21 -10.29 -46.16 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.83 Total: 5.84 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.05 Total: -10.39 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.32 Total: -56.32 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.30 Total: 21.15 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.48 Total: -1.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.87 -10.29 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.217 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds