Wall clock time and date at job start Tue Mar 31 2020 18:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47226 * 2 1 4 4 C 1.50708 * 109.46802 * 240.00598 * 2 1 3 5 5 H 1.08004 * 119.99758 * 245.37378 * 4 2 1 6 6 C 1.37871 * 120.00151 * 65.37407 * 4 2 1 7 7 N 1.31515 * 120.00255 * 184.88942 * 6 4 2 8 8 Si 1.86805 * 120.00036 * 5.16628 * 6 4 2 9 9 H 1.48497 * 109.47004 * 269.72193 * 8 6 4 10 10 H 1.48503 * 109.46903 * 29.72486 * 8 6 4 11 11 H 1.48498 * 109.46970 * 149.72467 * 8 6 4 12 12 N 1.46904 * 109.47076 * 120.00879 * 2 1 3 13 13 C 1.46899 * 110.99588 * 274.99504 * 12 2 1 14 14 C 1.50700 * 109.46974 * 180.02562 * 13 12 2 15 15 O 1.21277 * 119.99884 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99948 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99962 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46832 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.46696 * 179.97438 * 18 17 16 20 20 N 1.27939 * 124.23654 * 89.70335 * 19 18 17 21 21 C 1.34657 * 117.84807 * 179.81072 * 20 19 18 22 22 C 1.40967 * 129.69230 * 180.17549 * 21 20 19 23 23 C 1.36172 * 120.42870 * 180.33455 * 22 21 20 24 24 C 1.38792 * 120.77932 * 359.96471 * 23 22 21 25 25 C 1.37649 * 120.06557 * 0.02562 * 24 23 22 26 26 C 1.39341 * 119.95712 * 0.02562 * 25 24 23 27 27 S 1.70645 * 124.24203 * 270.00169 * 19 18 17 28 28 H 1.09000 * 109.46670 * 294.97707 * 1 2 3 29 29 H 1.09000 * 109.47265 * 54.97579 * 1 2 3 30 30 H 1.08997 * 109.47139 * 174.97824 * 1 2 3 31 31 H 0.97000 * 119.99720 * 355.27241 * 7 6 4 32 32 H 1.00907 * 110.99831 * 151.04769 * 12 2 1 33 33 H 1.08999 * 109.47413 * 300.00530 * 13 12 2 34 34 H 1.09001 * 109.47121 * 59.99993 * 13 12 2 35 35 H 0.97004 * 119.99697 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.46639 * 299.99956 * 17 16 14 37 37 H 1.08996 * 109.46930 * 59.99918 * 17 16 14 38 38 H 1.08995 * 109.47464 * 299.99708 * 18 17 16 39 39 H 1.09002 * 109.47111 * 60.00502 * 18 17 16 40 40 H 1.08005 * 119.78314 * 0.32221 * 22 21 20 41 41 H 1.07999 * 119.61047 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.96710 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.02439 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5797 -1.6363 -1.1340 6 6 1.7930 -0.1781 -2.4797 7 7 2.1461 -0.8445 -3.5572 8 14 0.9741 1.4931 -2.6418 9 1 -0.4987 1.3177 -2.7140 10 1 1.3161 2.3282 -1.4624 11 1 1.4542 2.1617 -3.8778 12 7 2.0197 -0.6927 1.1994 13 6 2.0825 0.2223 2.3469 14 6 2.5886 -0.5219 3.5556 15 8 2.8696 -1.6985 3.4695 16 7 2.7288 0.1201 4.7324 17 6 3.2212 -0.6033 5.9073 18 6 3.2866 0.3497 7.1025 19 6 3.7926 -0.3945 8.3112 20 7 5.0279 -0.4988 8.6273 21 6 5.3362 -1.1920 9.7398 22 6 6.5954 -1.4577 10.3151 23 6 6.6908 -2.1952 11.4557 24 6 5.5542 -2.6981 12.0735 25 6 4.3113 -2.4544 11.5344 26 6 4.1944 -1.7026 10.3671 27 16 2.7902 -1.2100 9.4258 28 1 -0.3633 0.4339 0.9316 29 1 -0.3634 0.5898 -0.8416 30 1 -0.3633 -1.0237 -0.0900 31 1 2.6358 -1.6776 -3.4734 32 1 2.9174 -1.1207 1.0286 33 1 2.7589 1.0459 2.1182 34 1 1.0871 0.6161 2.5525 35 1 2.5036 1.0611 4.8013 36 1 2.5457 -1.4276 6.1359 37 1 4.2169 -0.9959 5.7013 38 1 3.9623 1.1738 6.8736 39 1 2.2910 0.7427 7.3087 40 1 7.4904 -1.0738 9.8479 41 1 7.6623 -2.3911 11.8849 42 1 5.6450 -3.2811 12.9780 43 1 3.4274 -2.8463 12.0154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:06 Heat of formation + Delta-G solvation = -8.826693 kcal Electronic energy + Delta-G solvation = -24103.290699 eV Core-core repulsion = 20466.518560 eV Total energy + Delta-G solvation = -3636.772139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43706 -40.76958 -38.35418 -37.65064 -36.34147 -34.57839 -33.11442 -32.12785 -31.58682 -29.94420 -27.64850 -26.60165 -25.46249 -24.29891 -23.29227 -21.99398 -21.61020 -21.32268 -19.79203 -19.56858 -18.06602 -17.72487 -17.41502 -17.00414 -16.57874 -16.30219 -16.16175 -15.95959 -15.64414 -15.38845 -15.05212 -14.88140 -14.61374 -14.35468 -14.18056 -13.85461 -13.52287 -13.48911 -13.35971 -13.14294 -12.96529 -12.79234 -12.54348 -12.46281 -12.26356 -11.89931 -11.86418 -11.55902 -11.19652 -10.99453 -10.81174 -10.74161 -10.62477 -10.19626 -9.69812 -9.20689 -9.16969 -8.73479 -6.41842 -0.68138 0.11959 0.17148 0.61762 1.24206 1.45355 1.55974 1.61996 1.72481 2.01460 2.50030 2.65799 2.84223 3.09129 3.50202 3.56522 3.71049 3.85832 3.94425 3.95569 4.05509 4.25954 4.29928 4.38562 4.41057 4.45552 4.60790 4.62264 4.74119 4.82187 4.85392 4.89279 4.91833 5.03832 5.09956 5.22702 5.33656 5.38450 5.59849 5.73260 5.73817 5.98048 6.21753 6.43877 6.51448 6.67735 6.69001 7.26371 7.40404 8.63642 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.001689 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.304206 B =16572.706783 C =16820.764627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.184 3.816 3 H 0.015 0.985 4 C -0.601 4.601 5 H 0.014 0.986 6 C -0.029 4.029 7 N -0.945 5.945 8 Si 1.099 2.901 9 H -0.262 1.262 10 H -0.242 1.242 11 H -0.294 1.294 12 N -0.681 5.681 13 C 0.040 3.960 14 C 0.515 3.485 15 O -0.576 6.576 16 N -0.713 5.713 17 C 0.133 3.867 18 C -0.049 4.049 19 C 0.084 3.916 20 N -0.492 5.492 21 C 0.047 3.953 22 C -0.084 4.084 23 C -0.101 4.101 24 C -0.094 4.094 25 C -0.083 4.083 26 C -0.205 4.205 27 S 0.125 5.875 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.332 0.668 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.422 0.578 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 5.855 38.319 38.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.033 0.967 4 C -0.639 4.639 5 H 0.033 0.967 6 C -0.225 4.225 7 N -0.582 5.582 8 Si 0.920 3.080 9 H -0.187 1.187 10 H -0.166 1.166 11 H -0.221 1.221 12 N -0.313 5.313 13 C -0.092 4.092 14 C 0.302 3.698 15 O -0.454 6.454 16 N -0.368 5.368 17 C 0.008 3.992 18 C -0.090 4.090 19 C -0.200 4.200 20 N -0.206 5.206 21 C -0.072 4.072 22 C -0.105 4.105 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.324 4.324 27 S 0.382 5.618 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.184 0.816 42 H 0.188 0.812 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.315 5.987 37.031 37.535 hybrid contribution 2.581 -1.172 0.505 2.879 sum 3.896 4.816 37.537 38.044 Atomic orbital electron populations 1.21940 0.96628 1.00432 1.00016 1.19543 0.93350 0.92726 0.86938 0.96702 1.22432 1.38805 1.08896 0.93813 0.96721 1.27419 0.96667 1.06938 0.91484 1.70942 1.38725 1.16950 1.31556 0.83369 0.76620 0.71207 0.76762 1.18702 1.16616 1.22125 1.60247 1.33389 1.32745 1.04925 1.21994 1.03666 0.94495 0.89092 1.20979 0.76637 0.87080 0.85075 1.90697 1.51003 1.18346 1.85335 1.45659 1.67715 1.15073 1.08377 1.21080 0.99222 0.94815 0.84120 1.20556 1.04759 0.97062 0.86652 1.26674 0.91100 1.00770 1.01501 1.66172 1.19262 1.18966 1.16169 1.19569 0.95818 0.99577 0.92252 1.20713 0.94341 0.98975 0.96472 1.21181 1.01059 0.95807 0.94070 1.21645 0.90842 0.98453 1.00612 1.20772 1.00217 0.96935 0.92609 1.24235 0.96365 1.07997 1.03768 1.83828 1.08217 1.50608 1.19145 0.91627 0.93755 0.94645 0.94234 0.85060 0.90764 0.85860 0.73981 0.92033 0.93360 0.86472 0.85287 0.84446 0.81633 0.81206 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.03 71.98 0.65 -4.83 16 2 C 0.18 8.51 2.18 44.17 0.10 8.60 16 3 H 0.02 0.68 6.30 -2.39 -0.02 0.66 16 4 C -0.60 -35.04 8.92 25.60 0.23 -34.82 16 5 H 0.01 0.96 7.90 -2.91 -0.02 0.93 16 6 C -0.03 -1.68 5.43 84.65 0.46 -1.22 16 7 N -0.95 -60.75 13.70 21.44 0.29 -60.46 16 8 Si 1.10 49.40 25.28 68.60 1.73 51.13 16 9 H -0.26 -10.84 6.82 99.48 0.68 -10.16 16 10 H -0.24 -9.32 6.35 99.48 0.63 -8.68 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 N -0.68 -29.14 5.93 -499.45 -2.96 -32.10 16 13 C 0.04 1.19 5.96 85.56 0.51 1.70 16 14 C 0.52 15.61 7.87 87.66 0.69 16.30 16 15 O -0.58 -23.83 16.20 -3.02 -0.05 -23.88 16 16 N -0.71 -13.87 5.56 -463.05 -2.57 -16.45 16 17 C 0.13 2.65 5.66 86.38 0.49 3.14 16 18 C -0.05 -0.64 5.89 29.85 0.18 -0.47 16 19 C 0.08 1.57 6.54 88.67 0.58 2.15 16 20 N -0.49 -11.41 10.57 -182.51 -1.93 -13.34 16 21 C 0.05 1.01 7.00 39.79 0.28 1.29 16 22 C -0.08 -1.37 10.05 22.46 0.23 -1.15 16 23 C -0.10 -1.01 9.94 21.92 0.22 -0.79 16 24 C -0.09 -0.81 10.04 22.26 0.22 -0.59 16 25 C -0.08 -1.03 10.07 22.40 0.23 -0.81 16 26 C -0.20 -3.74 6.56 22.94 0.15 -3.59 16 27 S 0.13 2.03 23.11 -56.49 -1.31 0.73 16 28 H 0.06 2.16 7.35 -2.39 -0.02 2.14 16 29 H 0.04 1.79 4.41 -2.39 -0.01 1.78 16 30 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.25 16.41 8.72 -92.71 -0.81 15.61 16 32 H 0.33 15.78 7.96 -89.69 -0.71 15.07 16 33 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.12 2.99 7.36 -2.39 -0.02 2.98 16 35 H 0.42 4.57 8.47 -92.71 -0.79 3.79 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -83.74 371.21 -2.17 -85.91 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.58 Total: 23.52 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.20 Total: -15.07 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -7.17 Total: -122.35 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.73 Total: 51.13 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.31 Total: 0.73 kcal Total: -83.74 -2.17 -85.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.087 kcal (2) G-P(sol) polarization free energy of solvation -83.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds