Wall clock time and date at job start Tue Mar 31 2020 18:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.46800 * 180.02562 * 18 17 16 20 20 N 1.27934 * 124.24109 * 89.70056 * 19 18 17 21 21 C 1.34662 * 117.84319 * 179.80865 * 20 19 18 22 22 C 1.40962 * 129.68388 * 180.17680 * 21 20 19 23 23 C 1.36188 * 120.42374 * 180.34275 * 22 21 20 24 24 C 1.38785 * 120.77791 * 359.95286 * 23 22 21 25 25 C 1.37656 * 120.06694 * 0.02852 * 24 23 22 26 26 C 1.39335 * 119.95254 * 359.97438 * 25 24 23 27 27 S 1.70653 * 124.23388 * 269.99697 * 19 18 17 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 33 33 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 34 34 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 35 35 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 37 37 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 38 38 H 1.09001 * 109.47283 * 299.99980 * 18 17 16 39 39 H 1.08995 * 109.47106 * 60.00335 * 18 17 16 40 40 H 1.07997 * 119.79150 * 0.31868 * 22 21 20 41 41 H 1.07994 * 119.60810 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.96503 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.01951 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2865 0.3510 -7.1025 19 6 3.7914 -0.3933 -8.3117 20 7 3.0395 -1.0085 -9.1441 21 6 3.6284 -1.6293 -10.1839 22 6 3.0502 -2.3673 -11.2365 23 6 3.8350 -2.9276 -12.1983 24 6 5.2148 -2.7831 -12.1622 25 6 5.8070 -2.0675 -11.1463 26 6 5.0200 -1.4872 -10.1537 27 16 5.4383 -0.5272 -8.7380 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 2.9172 -1.1204 -1.0288 33 1 1.0871 0.6165 -2.5525 34 1 2.7588 1.0464 -2.1181 35 1 2.5050 1.0624 -4.8007 36 1 4.2162 -0.9964 -5.7017 37 1 2.5443 -1.4255 -6.1366 38 1 2.2911 0.7448 -7.3082 39 1 3.9629 1.1745 -6.8737 40 1 1.9781 -2.4895 -11.2805 41 1 3.3781 -3.4906 -12.9986 42 1 5.8246 -3.2327 -12.9320 43 1 6.8809 -1.9559 -11.1188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:11 Heat of formation + Delta-G solvation = 18.578038 kcal Electronic energy + Delta-G solvation = -24030.662489 eV Core-core repulsion = 20395.078708 eV Total energy + Delta-G solvation = -3635.583780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79851 -39.43906 -37.67499 -35.81462 -35.12621 -32.55050 -32.10794 -31.58005 -29.57650 -28.80157 -26.10931 -25.20011 -24.46707 -23.49834 -22.61275 -21.17704 -20.30162 -19.71373 -18.95388 -17.26000 -17.13511 -16.38369 -15.99705 -15.86876 -15.62101 -15.47745 -15.04236 -14.80942 -14.51650 -14.24815 -13.90885 -13.53301 -13.29095 -13.09229 -12.89622 -12.76506 -12.49277 -12.41434 -11.92446 -11.86470 -11.56708 -11.30798 -11.24600 -10.89856 -10.75784 -10.57292 -10.35792 -10.13268 -10.05805 -10.04477 -9.46801 -9.07425 -9.05552 -8.83701 -8.55758 -8.46203 -7.28452 -6.02323 -4.08108 -0.04302 0.68355 0.80610 1.29638 1.88854 2.96231 3.05329 3.25109 3.33666 3.37306 3.41480 3.55826 4.14571 4.39578 4.42682 4.49984 4.56767 4.62483 4.74709 4.85615 5.03031 5.14747 5.19951 5.28150 5.39822 5.41572 5.55504 5.67019 5.72381 5.74689 5.88792 5.90356 5.90734 6.22215 6.42402 6.84252 7.11615 7.19450 7.19918 7.42860 7.59042 7.79840 7.88589 8.26803 8.37492 8.47944 8.66484 9.01754 9.57652 11.04118 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.001635 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.967706 B =17124.028158 C =17276.324845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.673 5.673 13 C 0.045 3.955 14 C 0.514 3.486 15 O -0.522 6.522 16 N -0.741 5.741 17 C 0.129 3.871 18 C -0.061 4.061 19 C 0.100 3.900 20 N -0.462 5.462 21 C 0.083 3.917 22 C -0.063 4.063 23 C -0.107 4.107 24 C -0.103 4.103 25 C -0.072 4.072 26 C -0.185 4.185 27 S 0.109 5.891 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.261 0.739 32 H 0.341 0.659 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 0.427 -31.423 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.088 4.088 14 C 0.301 3.699 15 O -0.396 6.396 16 N -0.396 5.396 17 C 0.003 3.997 18 C -0.102 4.102 19 C -0.185 4.185 20 N -0.175 5.175 21 C -0.037 4.037 22 C -0.084 4.084 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.304 4.304 27 S 0.366 5.634 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.556 -0.169 -30.758 31.927 hybrid contribution 0.462 0.140 0.289 0.562 sum 9.018 -0.029 -30.469 31.776 Atomic orbital electron populations 1.21734 0.97742 0.99565 0.99317 1.19165 0.92750 0.92300 0.85343 0.97987 1.21217 1.31528 1.12595 0.90300 0.92094 1.24912 0.95030 0.95008 0.99038 1.69885 1.36629 1.22881 1.23586 0.86549 0.79068 0.79829 0.81892 1.21321 1.20148 1.20326 1.60502 1.33440 1.31717 1.04922 1.21807 1.01276 0.94941 0.90819 1.21118 0.76939 0.87853 0.84020 1.90691 1.48421 1.15970 1.84505 1.45979 1.69785 1.14153 1.09691 1.21140 1.00778 0.94463 0.83288 1.20573 1.03980 0.97164 0.88518 1.26397 0.93155 0.99529 0.99457 1.66178 1.38083 1.10134 1.03105 1.19194 0.88720 1.00522 0.95285 1.20442 1.00728 0.95546 0.91665 1.20764 0.93777 0.99570 0.98720 1.21168 0.95083 0.98235 0.97962 1.20372 0.99359 0.96998 0.92686 1.23936 0.97798 1.06846 1.01793 1.84064 1.09196 1.50787 1.19332 0.94788 0.89973 0.97770 0.92876 0.84075 0.88827 0.93283 0.76583 0.91245 0.90816 0.87519 0.88374 0.84669 0.84665 0.84670 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.39 2.60 -68.87 -0.18 5.21 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 4 C -0.52 -14.42 8.59 -34.44 -0.30 -14.71 16 5 H 0.06 1.70 7.62 -52.49 -0.40 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.67 -15.06 5.93 -109.22 -0.65 -15.71 16 13 C 0.04 0.78 5.97 -4.97 -0.03 0.75 16 14 C 0.51 8.43 7.87 -10.99 -0.09 8.34 16 15 O -0.52 -10.81 16.20 5.55 0.09 -10.72 16 16 N -0.74 -8.45 5.56 -60.29 -0.33 -8.78 16 17 C 0.13 1.38 5.66 -4.04 -0.02 1.36 16 18 C -0.06 -0.47 5.89 -27.88 -0.16 -0.63 16 19 C 0.10 0.97 6.54 -13.90 -0.09 0.88 16 20 N -0.46 -5.35 10.57 -9.08 -0.10 -5.45 16 21 C 0.08 0.89 7.00 -84.97 -0.59 0.30 16 22 C -0.06 -0.53 10.05 -39.29 -0.39 -0.92 16 23 C -0.11 -0.65 9.94 -40.12 -0.40 -1.05 16 24 C -0.10 -0.59 10.04 -39.59 -0.40 -0.99 16 25 C -0.07 -0.51 10.07 -39.39 -0.40 -0.91 16 26 C -0.18 -1.76 6.56 -38.55 -0.25 -2.01 16 27 S 0.11 0.94 23.11 -107.50 -2.48 -1.54 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 30 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.34 7.83 7.92 -39.30 -0.31 7.52 16 33 H 0.09 1.53 7.44 -51.93 -0.39 1.15 16 34 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -34.17 376.87 -11.15 -45.32 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.91 Total: 4.98 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.06 Total: -5.56 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.45 Total: -54.65 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.48 Total: -1.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.17 -11.15 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.899 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds