Wall clock time and date at job start Tue Mar 31 2020 18:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.46800 * 180.02562 * 18 17 16 20 20 N 1.27934 * 124.24109 * 89.70056 * 19 18 17 21 21 C 1.34662 * 117.84319 * 179.80865 * 20 19 18 22 22 C 1.40962 * 129.68388 * 180.17680 * 21 20 19 23 23 C 1.36188 * 120.42374 * 180.34275 * 22 21 20 24 24 C 1.38785 * 120.77791 * 359.95286 * 23 22 21 25 25 C 1.37656 * 120.06694 * 0.02852 * 24 23 22 26 26 C 1.39335 * 119.95254 * 359.97438 * 25 24 23 27 27 S 1.70653 * 124.23388 * 269.99697 * 19 18 17 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 33 33 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 34 34 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 35 35 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 37 37 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 38 38 H 1.09001 * 109.47283 * 299.99980 * 18 17 16 39 39 H 1.08995 * 109.47106 * 60.00335 * 18 17 16 40 40 H 1.07997 * 119.79150 * 0.31868 * 22 21 20 41 41 H 1.07994 * 119.60810 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.96503 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.01951 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2865 0.3510 -7.1025 19 6 3.7914 -0.3933 -8.3117 20 7 3.0395 -1.0085 -9.1441 21 6 3.6284 -1.6293 -10.1839 22 6 3.0502 -2.3673 -11.2365 23 6 3.8350 -2.9276 -12.1983 24 6 5.2148 -2.7831 -12.1622 25 6 5.8070 -2.0675 -11.1463 26 6 5.0200 -1.4872 -10.1537 27 16 5.4383 -0.5272 -8.7380 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 2.9172 -1.1204 -1.0288 33 1 1.0871 0.6165 -2.5525 34 1 2.7588 1.0464 -2.1181 35 1 2.5050 1.0624 -4.8007 36 1 4.2162 -0.9964 -5.7017 37 1 2.5443 -1.4255 -6.1366 38 1 2.2911 0.7448 -7.3082 39 1 3.9629 1.1745 -6.8737 40 1 1.9781 -2.4895 -11.2805 41 1 3.3781 -3.4906 -12.9986 42 1 5.8246 -3.2327 -12.9320 43 1 6.8809 -1.9559 -11.1188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:10 Heat of formation + Delta-G solvation = -5.630306 kcal Electronic energy + Delta-G solvation = -24031.712241 eV Core-core repulsion = 20395.078708 eV Total energy + Delta-G solvation = -3636.633533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42363 -40.72696 -38.33101 -37.48927 -36.30511 -34.46087 -33.05819 -32.11378 -31.04115 -29.85746 -27.63311 -26.95575 -25.48809 -24.29518 -23.27997 -22.00428 -21.75765 -21.28165 -19.58684 -18.89662 -17.80588 -17.66923 -17.29627 -16.92929 -16.61267 -16.51302 -16.05161 -15.91876 -15.71922 -15.21711 -15.09518 -14.84788 -14.50319 -14.38066 -14.18005 -13.51036 -13.50354 -13.43764 -13.11736 -12.95689 -12.81280 -12.68747 -12.53004 -12.45499 -12.28694 -12.17826 -12.00062 -11.88583 -11.18331 -11.00425 -10.84446 -10.70596 -10.55104 -10.16707 -9.68466 -9.15831 -9.05828 -8.13180 -6.26151 -0.66814 0.13316 0.18328 0.63082 1.25603 1.43016 1.45011 1.52631 1.64594 2.04248 2.43132 2.67232 2.85905 3.15371 3.54732 3.69098 3.74673 3.87457 3.96317 3.98618 4.06851 4.27263 4.31348 4.42052 4.46821 4.51023 4.62313 4.75781 4.85023 4.87267 4.90961 5.09478 5.11387 5.20441 5.24012 5.36309 5.39717 5.46433 5.66445 5.75195 5.85574 6.23137 6.42086 6.51087 6.52874 6.77244 6.95253 7.28288 7.43498 8.92078 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.001635 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.967706 B =17124.028158 C =17276.324845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.015 1.015 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.272 1.272 12 N -0.683 5.683 13 C 0.044 3.956 14 C 0.518 3.482 15 O -0.571 6.571 16 N -0.715 5.715 17 C 0.134 3.866 18 C -0.050 4.050 19 C 0.085 3.915 20 N -0.491 5.491 21 C 0.048 3.952 22 C -0.084 4.084 23 C -0.101 4.101 24 C -0.094 4.094 25 C -0.083 4.083 26 C -0.204 4.204 27 S 0.123 5.877 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.334 0.666 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.421 0.579 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 0.687 -33.172 34.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H 0.003 0.997 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.197 1.197 12 N -0.315 5.315 13 C -0.089 4.089 14 C 0.305 3.695 15 O -0.449 6.449 16 N -0.370 5.370 17 C 0.008 3.992 18 C -0.091 4.091 19 C -0.200 4.200 20 N -0.205 5.205 21 C -0.072 4.072 22 C -0.105 4.105 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.323 4.323 27 S 0.380 5.620 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.258 0.742 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.184 0.816 42 H 0.188 0.812 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.570 0.146 -32.554 33.932 hybrid contribution 0.169 0.040 0.660 0.683 sum 9.740 0.186 -31.894 33.348 Atomic orbital electron populations 1.21568 0.97469 0.98730 0.99538 1.18987 0.92910 0.91246 0.86071 0.99698 1.21526 1.31931 1.12732 0.91827 0.92938 1.25657 0.95147 0.95697 1.01745 1.69987 1.37137 1.23755 1.24292 0.85580 0.78729 0.78564 0.78536 1.20521 1.20144 1.19678 1.60376 1.33193 1.32806 1.05132 1.21875 1.02760 0.94638 0.89578 1.20898 0.76576 0.87072 0.84944 1.90679 1.50935 1.17971 1.85353 1.45681 1.67901 1.14998 1.08403 1.21088 0.99588 0.94642 0.83848 1.20554 1.05416 0.96755 0.86384 1.26647 0.93785 0.99736 0.99812 1.66174 1.39358 1.10963 1.03990 1.19568 0.89646 1.01896 0.96072 1.20718 1.01411 0.96222 0.92104 1.21184 0.94046 0.98446 0.98433 1.21645 0.95285 0.96767 0.97844 1.20771 1.00364 0.96919 0.92493 1.24227 0.97806 1.07587 1.02698 1.83842 1.08284 1.50663 1.19180 0.95992 0.92085 0.95138 0.92706 0.84825 0.87397 0.91289 0.74164 0.91933 0.93172 0.86516 0.85466 0.84406 0.81603 0.81200 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.22 11.05 2.60 44.17 0.11 11.17 16 3 H -0.01 -0.78 7.80 -2.39 -0.02 -0.80 16 4 C -0.54 -30.50 8.59 25.60 0.22 -30.28 16 5 H 0.05 2.97 7.62 -2.91 -0.02 2.95 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.68 -30.68 5.93 -499.46 -2.96 -33.64 16 13 C 0.04 1.48 5.97 85.56 0.51 1.99 16 14 C 0.52 16.68 7.87 87.66 0.69 17.37 16 15 O -0.57 -23.99 16.20 -3.04 -0.05 -24.03 16 16 N -0.71 -15.29 5.56 -463.05 -2.57 -17.87 16 17 C 0.13 2.81 5.66 86.38 0.49 3.30 16 18 C -0.05 -0.71 5.89 29.85 0.18 -0.54 16 19 C 0.09 1.64 6.54 88.68 0.58 2.22 16 20 N -0.49 -11.64 10.57 -182.52 -1.93 -13.57 16 21 C 0.05 1.03 7.00 39.78 0.28 1.31 16 22 C -0.08 -1.38 10.05 22.46 0.23 -1.16 16 23 C -0.10 -1.02 9.94 21.92 0.22 -0.80 16 24 C -0.09 -0.83 10.04 22.26 0.22 -0.60 16 25 C -0.08 -1.06 10.07 22.40 0.23 -0.83 16 26 C -0.20 -3.81 6.56 22.94 0.15 -3.66 16 27 S 0.12 2.08 23.11 -56.49 -1.31 0.78 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 30 H 0.03 1.30 7.45 -2.38 -0.02 1.28 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.33 15.63 7.92 -89.70 -0.71 14.92 16 33 H 0.11 3.33 7.44 -2.39 -0.02 3.31 16 34 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 35 H 0.42 5.66 8.47 -92.70 -0.79 4.87 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -75.76 376.87 -1.78 -77.54 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.45 Total: 20.57 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.21 Total: -4.14 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -7.22 Total: -116.85 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.78 kcal Total: -75.76 -1.78 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.909 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds