Wall clock time and date at job start Tue Mar 31 2020 18:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50699 * 109.46956 * 239.99705 * 2 1 3 5 5 H 1.08006 * 120.00391 * 274.99940 * 4 2 1 6 6 C 1.37880 * 119.99801 * 95.00569 * 4 2 1 7 7 N 1.31511 * 119.99841 * 184.91336 * 6 4 2 8 8 Si 1.86798 * 119.99968 * 4.91089 * 6 4 2 9 9 H 1.48503 * 109.47218 * 84.83122 * 8 6 4 10 10 H 1.48504 * 109.46950 * 204.82888 * 8 6 4 11 11 H 1.48504 * 109.47143 * 324.83158 * 8 6 4 12 12 N 1.46908 * 109.47137 * 119.99898 * 2 1 3 13 13 C 1.46892 * 111.00083 * 275.00188 * 12 2 1 14 14 C 1.52998 * 109.47309 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.46848 * 304.99594 * 14 13 12 16 16 O 1.42896 * 109.47393 * 64.99649 * 14 13 12 17 17 C 1.52996 * 109.47249 * 184.99799 * 14 13 12 18 18 O 1.42899 * 109.47327 * 174.99641 * 17 14 13 19 19 C 1.35898 * 117.00240 * 179.97438 * 18 17 14 20 20 C 1.38756 * 120.05600 * 0.02562 * 19 18 17 21 21 C 1.38120 * 119.94084 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.06349 * 0.02562 * 21 20 19 23 23 C 1.38253 * 120.10781 * 0.02562 * 22 21 20 24 24 C 1.38158 * 120.05312 * 359.67685 * 23 22 21 25 25 C 1.50702 * 120.03003 * 180.29887 * 24 23 22 26 26 F 1.39911 * 109.46951 * 0.32157 * 25 24 23 27 27 F 1.39901 * 109.47300 * 120.31669 * 25 24 23 28 28 F 1.39897 * 109.47535 * 240.32499 * 25 24 23 29 29 H 1.09001 * 109.46898 * 175.05434 * 1 2 3 30 30 H 1.09001 * 109.46956 * 295.05621 * 1 2 3 31 31 H 1.08996 * 109.46842 * 55.05218 * 1 2 3 32 32 H 0.97004 * 120.00206 * 180.02562 * 7 6 4 33 33 H 1.00902 * 110.99927 * 151.04044 * 12 2 1 34 34 H 1.09002 * 109.46848 * 299.99836 * 13 12 2 35 35 H 1.09000 * 109.47322 * 59.99316 * 13 12 2 36 36 H 0.96705 * 113.99792 * 60.00026 * 16 14 13 37 37 H 1.08994 * 109.47546 * 294.99940 * 17 14 13 38 38 H 1.09002 * 109.47080 * 54.99779 * 17 14 13 39 39 H 1.07994 * 120.02625 * 0.02562 * 20 19 18 40 40 H 1.08007 * 119.96728 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.95009 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.96882 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1060 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 1.9709 -1.4082 3.7501 16 8 3.9446 -0.9484 3.3479 17 6 2.5440 0.3852 4.7970 18 8 2.9128 -0.3534 5.9634 19 6 2.9182 0.3198 7.1439 20 6 2.5750 1.6638 7.1790 21 6 2.5808 2.3455 8.3803 22 6 2.9286 1.6901 9.5471 23 6 3.2720 0.3513 9.5146 24 6 3.2619 -0.3367 8.3165 25 6 3.6297 -1.7978 8.2827 26 9 3.9338 -2.2322 9.5774 27 9 2.5530 -2.5383 7.7832 28 9 4.7439 -1.9792 7.4563 29 1 -0.3633 -1.0239 -0.0886 30 1 -0.3633 0.4352 0.9310 31 1 -0.3633 0.5887 -0.8423 32 1 2.9371 -0.1050 -4.2554 33 1 2.9173 -1.1206 1.0288 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6163 2.5525 36 1 4.5585 -0.2195 3.1838 37 1 3.2369 1.2150 4.6582 38 1 1.5324 0.7729 4.9172 39 1 2.3028 2.1760 6.2681 40 1 2.3133 3.3916 8.4082 41 1 2.9329 2.2250 10.4853 42 1 3.5437 -0.1583 10.4271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:18 Heat of formation + Delta-G solvation = -214.654236 kcal Electronic energy + Delta-G solvation = -28747.712801 eV Core-core repulsion = 24085.112948 eV Total energy + Delta-G solvation = -4662.599853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.19329 -47.75960 -47.59403 -40.71973 -38.51633 -37.22635 -35.43552 -32.60053 -32.43605 -31.14291 -30.37749 -28.69643 -26.18174 -25.57970 -24.74484 -22.60635 -22.43944 -21.39441 -19.73919 -19.12703 -18.51537 -18.50174 -17.91210 -17.14975 -16.76645 -16.61508 -15.78221 -15.51409 -15.46174 -15.00146 -14.74939 -14.51413 -14.45929 -14.08438 -14.01896 -13.79478 -13.79272 -13.62401 -13.54478 -13.25641 -12.94826 -12.89128 -12.59191 -12.21414 -12.09985 -11.93883 -11.53584 -11.38588 -11.09861 -11.03829 -10.79455 -10.67388 -10.42328 -10.00737 -9.79165 -9.73501 -9.07215 -8.79097 -8.65576 -7.53864 -6.16379 -4.17447 0.50970 0.85968 2.50942 2.66042 3.05720 3.17898 3.27426 3.28431 3.59464 3.85484 4.27856 4.31479 4.33399 4.35901 4.43689 4.54348 4.61260 4.80630 4.81337 4.94524 5.04796 5.10915 5.21896 5.26788 5.32572 5.55455 5.62888 5.71260 5.84823 5.89819 6.10721 6.16597 6.33449 6.57505 6.74887 6.79429 6.85997 7.34117 7.56630 7.69794 7.86634 8.33912 8.59294 8.94011 9.46798 10.96732 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002478 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.526266 B =11296.732028 C =12020.211964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.081 0.919 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.678 5.678 13 C 0.031 3.969 14 C 0.112 3.888 15 H 0.118 0.882 16 O -0.545 6.545 17 C 0.026 3.974 18 O -0.292 6.292 19 C 0.185 3.815 20 C -0.215 4.215 21 C -0.047 4.047 22 C -0.165 4.165 23 C -0.036 4.036 24 C -0.223 4.223 25 C 0.517 3.483 26 F -0.183 7.183 27 F -0.172 7.172 28 F -0.170 7.170 29 H 0.053 0.947 30 H 0.019 0.981 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.350 0.650 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 7.286 28.255 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.312 5.312 13 C -0.099 4.099 14 C 0.053 3.947 15 H 0.136 0.864 16 O -0.349 6.349 17 C -0.050 4.050 18 O -0.204 6.204 19 C 0.137 3.863 20 C -0.233 4.233 21 C -0.065 4.065 22 C -0.183 4.183 23 C -0.054 4.054 24 C -0.225 4.225 25 C 0.463 3.537 26 F -0.165 7.165 27 F -0.153 7.153 28 F -0.152 7.152 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.104 6.210 28.223 28.898 hybrid contribution 0.910 2.242 -0.511 2.473 sum 1.014 8.452 27.712 28.990 Atomic orbital electron populations 1.21859 0.98065 1.00867 0.97647 1.19582 0.92451 0.92377 0.88355 0.97947 1.21075 1.43736 0.96023 0.94974 0.90098 1.25040 0.94416 0.98157 0.95347 1.69898 1.45781 1.35814 1.01653 0.86886 0.78807 0.86623 0.77320 1.20399 1.21323 1.19099 1.60629 1.33997 1.31806 1.04738 1.22506 1.00415 0.94577 0.92426 1.22072 0.84888 0.98258 0.89523 0.86400 1.86701 1.17782 1.36954 1.93493 1.23847 1.00932 0.95880 0.84300 1.86250 1.82275 1.38560 1.13312 1.18677 0.91477 0.90770 0.85378 1.21327 1.08394 0.93234 1.00372 1.21207 0.93598 1.00002 0.91671 1.21055 1.03993 0.94252 0.99039 1.20895 0.94015 0.94527 0.95943 1.19365 1.15854 0.93025 0.94222 1.17977 0.75140 0.87278 0.73306 1.93142 1.93352 1.91274 1.38687 1.93234 1.55465 1.79163 1.87484 1.93248 1.53411 1.96094 1.72398 0.92827 0.96215 0.94005 0.92496 0.83061 0.95760 0.90774 0.78342 0.91267 0.90483 0.84249 0.84804 0.84727 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.42 37.16 0.35 -2.33 16 2 C 0.18 4.13 2.26 -68.86 -0.16 3.97 16 3 H 0.00 0.07 4.95 -51.93 -0.26 -0.19 16 4 C -0.52 -14.27 8.84 -34.44 -0.30 -14.57 16 5 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 8 Si 0.88 20.90 26.99 -169.99 -4.59 16.31 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.07 6.82 56.52 0.39 -5.69 16 12 N -0.68 -13.46 6.30 -107.95 -0.68 -14.14 16 13 C 0.03 0.47 5.16 -3.83 -0.02 0.45 16 14 C 0.11 1.49 3.49 -26.73 -0.09 1.40 16 15 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 16 O -0.55 -7.88 12.82 -40.09 -0.51 -8.40 16 17 C 0.03 0.27 4.37 37.16 0.16 0.43 16 18 O -0.29 -3.64 9.01 -24.27 -0.22 -3.86 16 19 C 0.18 2.01 6.57 -39.21 -0.26 1.75 16 20 C -0.21 -1.79 9.04 -39.43 -0.36 -2.14 16 21 C -0.05 -0.31 10.04 -39.61 -0.40 -0.70 16 22 C -0.17 -1.06 10.04 -39.56 -0.40 -1.45 16 23 C -0.04 -0.28 9.43 -39.61 -0.37 -0.66 16 24 C -0.22 -2.37 5.38 -104.47 -0.56 -2.93 16 25 C 0.52 6.23 2.99 36.01 0.11 6.34 16 26 F -0.18 -1.97 15.98 2.25 0.04 -1.93 16 27 F -0.17 -2.32 16.95 2.25 0.04 -2.29 16 28 F -0.17 -2.33 16.95 2.25 0.04 -2.29 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.35 7.35 -51.93 -0.38 -0.03 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.35 7.29 7.91 -39.29 -0.31 6.98 16 34 H 0.02 0.35 8.06 -51.93 -0.42 -0.06 16 35 H 0.07 1.05 7.36 -51.93 -0.38 0.67 16 36 H 0.37 4.06 9.05 45.56 0.41 4.47 16 37 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 39 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 40 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.87 7.16 -52.49 -0.38 0.50 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -32.05 362.85 -6.57 -38.62 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.53 Total: 7.04 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.39 Total: -8.48 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.09 Total: -40.19 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.73 Total: -12.26 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.05 -6.57 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.033 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds