Wall clock time and date at job start Tue Mar 31 2020 18:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50699 * 109.46956 * 239.99705 * 2 1 3 5 5 H 1.08006 * 120.00391 * 274.99940 * 4 2 1 6 6 C 1.37880 * 119.99801 * 95.00569 * 4 2 1 7 7 N 1.31511 * 119.99841 * 184.91336 * 6 4 2 8 8 Si 1.86798 * 119.99968 * 4.91089 * 6 4 2 9 9 H 1.48503 * 109.47218 * 84.83122 * 8 6 4 10 10 H 1.48504 * 109.46950 * 204.82888 * 8 6 4 11 11 H 1.48504 * 109.47143 * 324.83158 * 8 6 4 12 12 N 1.46908 * 109.47137 * 119.99898 * 2 1 3 13 13 C 1.46892 * 111.00083 * 275.00188 * 12 2 1 14 14 C 1.52998 * 109.47309 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.46848 * 304.99594 * 14 13 12 16 16 O 1.42896 * 109.47393 * 64.99649 * 14 13 12 17 17 C 1.52996 * 109.47249 * 184.99799 * 14 13 12 18 18 O 1.42899 * 109.47327 * 174.99641 * 17 14 13 19 19 C 1.35898 * 117.00240 * 179.97438 * 18 17 14 20 20 C 1.38756 * 120.05600 * 0.02562 * 19 18 17 21 21 C 1.38120 * 119.94084 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.06349 * 0.02562 * 21 20 19 23 23 C 1.38253 * 120.10781 * 0.02562 * 22 21 20 24 24 C 1.38158 * 120.05312 * 359.67685 * 23 22 21 25 25 C 1.50702 * 120.03003 * 180.29887 * 24 23 22 26 26 F 1.39911 * 109.46951 * 0.32157 * 25 24 23 27 27 F 1.39901 * 109.47300 * 120.31669 * 25 24 23 28 28 F 1.39897 * 109.47535 * 240.32499 * 25 24 23 29 29 H 1.09001 * 109.46898 * 175.05434 * 1 2 3 30 30 H 1.09001 * 109.46956 * 295.05621 * 1 2 3 31 31 H 1.08996 * 109.46842 * 55.05218 * 1 2 3 32 32 H 0.97004 * 120.00206 * 180.02562 * 7 6 4 33 33 H 1.00902 * 110.99927 * 151.04044 * 12 2 1 34 34 H 1.09002 * 109.46848 * 299.99836 * 13 12 2 35 35 H 1.09000 * 109.47322 * 59.99316 * 13 12 2 36 36 H 0.96705 * 113.99792 * 60.00026 * 16 14 13 37 37 H 1.08994 * 109.47546 * 294.99940 * 17 14 13 38 38 H 1.09002 * 109.47080 * 54.99779 * 17 14 13 39 39 H 1.07994 * 120.02625 * 0.02562 * 20 19 18 40 40 H 1.08007 * 119.96728 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.95009 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.96882 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1060 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 1.9709 -1.4082 3.7501 16 8 3.9446 -0.9484 3.3479 17 6 2.5440 0.3852 4.7970 18 8 2.9128 -0.3534 5.9634 19 6 2.9182 0.3198 7.1439 20 6 2.5750 1.6638 7.1790 21 6 2.5808 2.3455 8.3803 22 6 2.9286 1.6901 9.5471 23 6 3.2720 0.3513 9.5146 24 6 3.2619 -0.3367 8.3165 25 6 3.6297 -1.7978 8.2827 26 9 3.9338 -2.2322 9.5774 27 9 2.5530 -2.5383 7.7832 28 9 4.7439 -1.9792 7.4563 29 1 -0.3633 -1.0239 -0.0886 30 1 -0.3633 0.4352 0.9310 31 1 -0.3633 0.5887 -0.8423 32 1 2.9371 -0.1050 -4.2554 33 1 2.9173 -1.1206 1.0288 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6163 2.5525 36 1 4.5585 -0.2195 3.1838 37 1 3.2369 1.2150 4.6582 38 1 1.5324 0.7729 4.9172 39 1 2.3028 2.1760 6.2681 40 1 2.3133 3.3916 8.4082 41 1 2.9329 2.2250 10.4853 42 1 3.5437 -0.1583 10.4271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:17 Heat of formation + Delta-G solvation = -238.184544 kcal Electronic energy + Delta-G solvation = -28748.733152 eV Core-core repulsion = 24085.112948 eV Total energy + Delta-G solvation = -4663.620204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.13699 -48.68263 -48.59724 -41.41005 -39.42740 -38.22250 -36.95436 -34.42594 -33.19639 -32.34113 -31.24754 -29.94333 -27.37126 -26.94809 -26.04139 -23.48523 -23.11688 -22.38339 -21.51453 -19.89599 -19.47859 -19.40562 -19.21131 -18.55919 -17.70473 -17.58603 -17.12599 -16.46059 -16.11754 -16.00661 -15.73895 -15.56072 -15.48660 -15.37044 -15.05455 -14.94424 -14.83425 -14.78968 -14.75920 -14.59994 -14.04993 -13.82742 -13.66546 -13.63355 -13.26031 -12.87864 -12.67003 -12.61950 -12.59607 -12.27146 -12.14857 -12.04876 -11.81983 -11.73342 -11.15592 -10.98219 -10.73887 -10.31377 -9.41745 -9.09838 -8.31703 -6.38452 -0.08191 0.27994 1.31735 1.34246 1.45385 1.67258 1.89100 2.31517 2.48930 2.76871 3.01175 3.04006 3.36188 3.42295 3.47343 3.76815 3.83719 3.95719 4.02363 4.08123 4.17869 4.30435 4.32697 4.39151 4.43345 4.49872 4.70110 4.73666 4.88965 4.99049 5.03933 5.07020 5.11579 5.22712 5.38210 5.50194 5.64216 5.70469 6.02168 6.17393 6.52041 6.67931 6.77835 6.84810 7.30874 8.85469 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002478 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.526266 B =11296.732028 C =12020.211964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.184 3.816 3 H 0.010 0.990 4 C -0.526 4.526 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.288 1.288 11 H -0.242 1.242 12 N -0.689 5.689 13 C 0.033 3.967 14 C 0.119 3.881 15 H 0.095 0.905 16 O -0.569 6.569 17 C 0.033 3.967 18 O -0.321 6.321 19 C 0.159 3.841 20 C -0.217 4.217 21 C -0.042 4.042 22 C -0.157 4.157 23 C -0.042 4.042 24 C -0.244 4.244 25 C 0.512 3.488 26 F -0.178 7.178 27 F -0.186 7.186 28 F -0.186 7.186 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.339 0.661 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.384 0.616 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 11.289 30.906 32.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 H 0.028 0.972 4 C -0.564 4.564 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.214 1.214 11 H -0.165 1.165 12 N -0.321 5.321 13 C -0.096 4.096 14 C 0.059 3.941 15 H 0.113 0.887 16 O -0.375 6.375 17 C -0.043 4.043 18 O -0.234 6.234 19 C 0.112 3.888 20 C -0.236 4.236 21 C -0.059 4.059 22 C -0.174 4.174 23 C -0.060 4.060 24 C -0.246 4.246 25 C 0.458 3.542 26 F -0.160 7.160 27 F -0.168 7.168 28 F -0.167 7.167 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.174 0.826 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.626 10.219 30.917 32.568 hybrid contribution 1.160 0.891 -1.227 1.909 sum 0.534 11.109 29.690 31.704 Atomic orbital electron populations 1.21775 0.96678 1.00306 0.99372 1.19453 0.93440 0.92061 0.87476 0.97204 1.21323 1.43567 0.94113 0.97404 0.95127 1.25990 0.93995 1.04015 0.94627 1.70069 1.47739 1.38192 1.02686 0.85747 0.80030 0.79445 0.77724 1.19088 1.21393 1.16523 1.60517 1.33531 1.33032 1.05062 1.22583 1.01925 0.94119 0.91008 1.21864 0.83942 0.97853 0.90402 0.88663 1.86663 1.18680 1.38498 1.93703 1.23731 1.02787 0.95100 0.82636 1.86182 1.83067 1.39879 1.14266 1.18931 0.93208 0.91983 0.84689 1.21596 1.07874 0.92126 1.01963 1.21657 0.91992 1.01443 0.90849 1.21484 1.02005 0.93456 1.00502 1.21171 0.93942 0.95460 0.95429 1.19475 1.17653 0.91928 0.95531 1.18309 0.74392 0.88441 0.73103 1.93138 1.93280 1.91395 1.38137 1.93196 1.56072 1.79750 1.87759 1.93207 1.54213 1.96284 1.72997 0.94314 0.92658 0.94331 0.92419 0.84245 0.94246 0.89049 0.76725 0.89043 0.88433 0.82581 0.81503 0.81567 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.42 71.98 0.68 -4.33 16 2 C 0.18 8.24 2.26 44.17 0.10 8.34 16 3 H 0.01 0.45 4.95 -2.39 -0.01 0.43 16 4 C -0.53 -29.64 8.84 25.60 0.23 -29.42 16 5 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 6 C 0.01 0.66 5.47 84.66 0.46 1.13 16 7 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 8 Si 0.95 42.39 26.99 68.60 1.85 44.24 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.24 -9.81 6.82 99.48 0.68 -9.13 16 12 N -0.69 -27.02 6.30 -495.45 -3.12 -30.14 16 13 C 0.03 0.93 5.16 86.30 0.44 1.38 16 14 C 0.12 3.04 3.49 30.59 0.11 3.14 16 15 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 16 O -0.57 -16.38 12.82 -144.34 -1.85 -18.23 16 17 C 0.03 0.61 4.37 71.98 0.31 0.92 16 18 O -0.32 -7.77 9.01 -87.76 -0.79 -8.56 16 19 C 0.16 3.23 6.57 22.51 0.15 3.38 16 20 C -0.22 -2.91 9.04 22.37 0.20 -2.71 16 21 C -0.04 -0.37 10.04 22.25 0.22 -0.14 16 22 C -0.16 -1.40 10.04 22.28 0.22 -1.17 16 23 C -0.04 -0.58 9.43 22.25 0.21 -0.37 16 24 C -0.24 -5.00 5.38 -19.77 -0.11 -5.10 16 25 C 0.51 12.56 2.99 71.24 0.21 12.78 16 26 F -0.18 -3.84 15.98 44.97 0.72 -3.13 16 27 F -0.19 -5.23 16.95 44.97 0.76 -4.46 16 28 F -0.19 -5.28 16.95 44.97 0.76 -4.52 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.84 7.35 -2.39 -0.02 1.82 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.34 14.44 7.91 -89.69 -0.71 13.73 16 34 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 35 H 0.09 2.25 7.36 -2.39 -0.02 2.23 16 36 H 0.38 8.13 9.05 -74.05 -0.67 7.46 16 37 H 0.09 1.27 7.66 -2.39 -0.02 1.25 16 38 H 0.10 1.38 7.66 -2.39 -0.02 1.36 16 39 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 40 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 41 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.60 7.16 -2.91 -0.02 1.58 16 Total: -1.00 -73.38 362.85 1.75 -71.64 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.33 Total: 23.76 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 3.45 Total: -12.19 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -2.82 Total: -88.56 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.64 Total: -26.79 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 2.24 Total: -12.11 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.85 Total: 44.24 kcal Total: -73.38 1.75 -71.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.549 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds