Wall clock time and date at job start Tue Mar 31 2020 18:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47444 * 2 1 4 4 C 1.50700 * 109.47243 * 240.00039 * 2 1 3 5 5 H 1.08000 * 120.00562 * 274.99597 * 4 2 1 6 6 C 1.37881 * 119.99880 * 94.99491 * 4 2 1 7 7 N 1.31512 * 120.00049 * 184.91222 * 6 4 2 8 8 Si 1.86807 * 119.99734 * 4.91792 * 6 4 2 9 9 H 1.48501 * 109.47051 * 84.83137 * 8 6 4 10 10 H 1.48503 * 109.46668 * 204.82834 * 8 6 4 11 11 H 1.48497 * 109.46928 * 324.82900 * 8 6 4 12 12 N 1.46898 * 109.47443 * 120.00287 * 2 1 3 13 13 C 1.46906 * 111.00077 * 275.00106 * 12 2 1 14 14 C 1.53002 * 109.47185 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.47193 * 60.00177 * 14 13 12 16 16 O 1.42899 * 109.47052 * 299.99887 * 14 13 12 17 17 C 1.53000 * 109.46797 * 180.02562 * 14 13 12 18 18 O 1.42901 * 109.46654 * 185.00079 * 17 14 13 19 19 C 1.35902 * 116.99532 * 179.97438 * 18 17 14 20 20 C 1.38751 * 120.05792 * 0.24959 * 19 18 17 21 21 C 1.38124 * 119.94253 * 180.32479 * 20 19 18 22 22 C 1.38291 * 120.05696 * 359.67565 * 21 20 19 23 23 C 1.38242 * 120.10980 * 0.02595 * 22 21 20 24 24 C 1.38162 * 120.05624 * 0.02562 * 23 22 21 25 25 C 1.50698 * 120.02696 * 179.97438 * 24 23 22 26 26 F 1.39897 * 109.47621 * 359.97438 * 25 24 23 27 27 F 1.39901 * 109.47263 * 120.00594 * 25 24 23 28 28 F 1.39906 * 109.47500 * 239.99896 * 25 24 23 29 29 H 1.08997 * 109.47347 * 295.03732 * 1 2 3 30 30 H 1.08993 * 109.47119 * 55.04493 * 1 2 3 31 31 H 1.08999 * 109.46983 * 175.04465 * 1 2 3 32 32 H 0.97007 * 119.99952 * 179.97438 * 7 6 4 33 33 H 1.00900 * 111.00412 * 38.95336 * 12 2 1 34 34 H 1.09002 * 109.46765 * 60.00112 * 13 12 2 35 35 H 1.09002 * 109.47042 * 300.00004 * 13 12 2 36 36 H 0.96697 * 114.00117 * 300.00041 * 16 14 13 37 37 H 1.08993 * 109.47347 * 64.99898 * 17 14 13 38 38 H 1.09001 * 109.46897 * 304.99914 * 17 14 13 39 39 H 1.07997 * 120.03013 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.97628 * 179.70561 * 21 20 19 41 41 H 1.08006 * 119.94311 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.97358 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3601 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5988 2.3951 -1.7821 10 1 2.1055 2.3992 -3.6928 11 1 1.1983 2.3274 -1.4450 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5333 3.5745 15 1 3.5904 -0.9273 3.3691 16 8 1.7080 -1.6128 3.8740 17 6 2.6599 0.4196 4.7697 18 8 3.2473 -0.2542 5.8847 19 6 3.3798 0.4569 7.0352 20 6 2.9484 1.7744 7.0915 21 6 3.0904 2.4970 8.2601 22 6 3.6557 1.9063 9.3754 23 6 4.0806 0.5918 9.3237 24 6 3.9418 -0.1349 8.1568 25 6 4.4057 -1.5676 8.1010 26 9 4.9376 -1.9344 9.3419 27 9 3.3218 -2.3972 7.7941 28 9 5.3891 -1.7014 7.1149 29 1 -0.3634 0.4349 0.9311 30 1 -0.3633 0.5887 -0.8422 31 1 -0.3633 -1.0238 -0.0888 32 1 2.9362 -0.1047 -4.2557 33 1 1.4496 -1.4980 1.4100 34 1 1.0870 0.6161 2.5526 35 1 2.7588 1.0462 2.1183 36 1 0.8021 -1.3353 4.0675 37 1 1.6526 0.7441 5.0307 38 1 3.2654 1.2879 4.5097 39 1 2.5065 2.2361 6.2209 40 1 2.7592 3.5241 8.3031 41 1 3.7654 2.4729 10.2883 42 1 4.5222 0.1327 10.1959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:22 Heat of formation + Delta-G solvation = -211.896487 kcal Electronic energy + Delta-G solvation = -28750.620178 eV Core-core repulsion = 24088.139910 eV Total energy + Delta-G solvation = -4662.480268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.19314 -47.76006 -47.59190 -40.72380 -38.54503 -37.28094 -35.51713 -32.59327 -32.40705 -31.18142 -30.39072 -28.62547 -26.18094 -25.38865 -24.88436 -22.61569 -22.44182 -21.41773 -20.04728 -19.13295 -18.51385 -18.50233 -17.94208 -17.13395 -16.75894 -16.62160 -15.75932 -15.51469 -15.19235 -15.10950 -14.69459 -14.50913 -14.48516 -14.09525 -14.05076 -13.89956 -13.79388 -13.79052 -13.38674 -13.08376 -12.97495 -12.85483 -12.59147 -12.30426 -12.13575 -12.01857 -11.53575 -11.43027 -11.27708 -11.09944 -10.83767 -10.76347 -10.36310 -9.97088 -9.74592 -9.73617 -9.18437 -8.79389 -8.55098 -7.46046 -6.07418 -4.04901 0.50765 0.85782 2.50831 2.65656 3.05521 3.24342 3.30651 3.32995 3.59511 3.85471 4.26761 4.31784 4.34869 4.38545 4.43516 4.53228 4.60898 4.78944 4.81157 4.94142 5.03176 5.13501 5.20910 5.25307 5.32119 5.57819 5.62677 5.71063 5.85264 5.89598 6.09492 6.15800 6.17643 6.30389 6.53483 6.71697 6.84936 7.08490 7.64077 7.65844 7.89469 8.32691 8.63725 9.01664 9.54588 11.06309 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.002491 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.260254 B =11238.694023 C =11881.785431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.180 3.820 3 H 0.035 0.965 4 C -0.492 4.492 5 H 0.077 0.923 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.668 5.668 13 C 0.030 3.970 14 C 0.113 3.887 15 H 0.120 0.880 16 O -0.545 6.545 17 C 0.026 3.974 18 O -0.292 6.292 19 C 0.185 3.815 20 C -0.215 4.215 21 C -0.047 4.047 22 C -0.165 4.165 23 C -0.036 4.036 24 C -0.222 4.222 25 C 0.517 3.483 26 F -0.183 7.183 27 F -0.171 7.171 28 F -0.172 7.172 29 H 0.018 0.982 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.337 0.663 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.368 0.632 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 7.147 28.600 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.095 0.905 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.299 5.299 13 C -0.100 4.100 14 C 0.053 3.947 15 H 0.137 0.863 16 O -0.348 6.348 17 C -0.050 4.050 18 O -0.204 6.204 19 C 0.137 3.863 20 C -0.233 4.233 21 C -0.065 4.065 22 C -0.183 4.183 23 C -0.054 4.054 24 C -0.225 4.225 25 C 0.463 3.537 26 F -0.164 7.164 27 F -0.152 7.152 28 F -0.153 7.153 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.214 0.786 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.293 6.646 28.051 28.856 hybrid contribution -1.438 1.628 0.105 2.175 sum -0.145 8.274 28.156 29.347 Atomic orbital electron populations 1.22650 1.00965 1.00929 0.98499 1.19676 0.89411 0.94575 0.89128 0.94686 1.20861 1.42724 0.95823 0.93693 0.90460 1.24990 0.94804 0.98004 0.95419 1.69891 1.46535 1.35633 1.01687 0.86902 0.78768 0.86854 0.77091 1.20173 1.21484 1.19453 1.60825 1.58619 1.08594 1.01869 1.22517 0.98914 0.96693 0.91915 1.22088 0.96362 0.87048 0.89227 0.86270 1.86711 1.22833 1.33501 1.91791 1.23843 0.98167 0.97228 0.85723 1.86253 1.76152 1.39841 1.18140 1.18675 0.91507 0.90435 0.85689 1.21325 1.07567 0.93549 1.00886 1.21210 0.93818 0.99680 0.91772 1.21057 1.02811 0.94906 0.99558 1.20896 0.94820 0.94035 0.95628 1.19366 1.13176 0.94058 0.95857 1.17975 0.75490 0.86842 0.73395 1.93138 1.87002 1.92973 1.43333 1.93244 1.54746 1.74366 1.92835 1.93241 1.63096 1.96516 1.62453 0.96321 0.93169 0.93076 0.92630 0.84427 0.95936 0.90589 0.78619 0.91312 0.90422 0.84256 0.84802 0.84723 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.16 37.15 0.34 -3.11 16 2 C 0.18 4.09 2.23 -68.87 -0.15 3.94 16 3 H 0.04 0.81 4.95 -51.93 -0.26 0.55 16 4 C -0.49 -13.71 9.19 -34.44 -0.32 -14.02 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 8 Si 0.88 21.13 26.99 -169.99 -4.59 16.54 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.13 6.82 56.52 0.39 -5.74 16 12 N -0.67 -13.19 6.23 -107.95 -0.67 -13.86 16 13 C 0.03 0.45 5.19 -3.82 -0.02 0.43 16 14 C 0.11 1.49 3.52 -26.73 -0.09 1.39 16 15 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 16 O -0.54 -7.53 12.64 -40.11 -0.51 -8.03 16 17 C 0.03 0.27 4.37 37.16 0.16 0.43 16 18 O -0.29 -3.64 9.01 -24.31 -0.22 -3.86 16 19 C 0.18 2.01 6.57 -39.22 -0.26 1.75 16 20 C -0.21 -1.78 9.04 -39.43 -0.36 -2.14 16 21 C -0.05 -0.31 10.04 -39.60 -0.40 -0.70 16 22 C -0.17 -1.06 10.04 -39.56 -0.40 -1.45 16 23 C -0.04 -0.28 9.43 -39.61 -0.37 -0.66 16 24 C -0.22 -2.37 5.38 -104.47 -0.56 -2.93 16 25 C 0.52 6.24 2.99 36.00 0.11 6.35 16 26 F -0.18 -1.97 15.97 2.25 0.04 -1.94 16 27 F -0.17 -2.32 16.96 2.25 0.04 -2.28 16 28 F -0.17 -2.35 16.94 2.25 0.04 -2.31 16 29 H 0.02 0.31 7.35 -51.93 -0.38 -0.07 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.34 6.46 7.87 -39.29 -0.31 6.15 16 34 H 0.02 0.30 7.36 -51.93 -0.38 -0.08 16 35 H 0.08 1.13 8.06 -51.93 -0.42 0.72 16 36 H 0.37 3.68 9.04 45.56 0.41 4.09 16 37 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 38 H 0.08 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.14 0.93 6.30 -52.49 -0.33 0.60 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.14 0.87 7.16 -52.48 -0.38 0.50 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -32.76 362.69 -6.58 -39.34 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.53 Total: 6.40 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.42 Total: -8.84 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.10 Total: -40.49 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.73 Total: -11.89 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.59 Total: 16.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.76 -6.58 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.558 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds