Wall clock time and date at job start Tue Mar 31 2020 18:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47444 * 2 1 4 4 C 1.50700 * 109.47243 * 240.00039 * 2 1 3 5 5 H 1.08000 * 120.00562 * 274.99597 * 4 2 1 6 6 C 1.37881 * 119.99880 * 94.99491 * 4 2 1 7 7 N 1.31512 * 120.00049 * 184.91222 * 6 4 2 8 8 Si 1.86807 * 119.99734 * 4.91792 * 6 4 2 9 9 H 1.48501 * 109.47051 * 84.83137 * 8 6 4 10 10 H 1.48503 * 109.46668 * 204.82834 * 8 6 4 11 11 H 1.48497 * 109.46928 * 324.82900 * 8 6 4 12 12 N 1.46898 * 109.47443 * 120.00287 * 2 1 3 13 13 C 1.46906 * 111.00077 * 275.00106 * 12 2 1 14 14 C 1.53002 * 109.47185 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.47193 * 60.00177 * 14 13 12 16 16 O 1.42899 * 109.47052 * 299.99887 * 14 13 12 17 17 C 1.53000 * 109.46797 * 180.02562 * 14 13 12 18 18 O 1.42901 * 109.46654 * 185.00079 * 17 14 13 19 19 C 1.35902 * 116.99532 * 179.97438 * 18 17 14 20 20 C 1.38751 * 120.05792 * 0.24959 * 19 18 17 21 21 C 1.38124 * 119.94253 * 180.32479 * 20 19 18 22 22 C 1.38291 * 120.05696 * 359.67565 * 21 20 19 23 23 C 1.38242 * 120.10980 * 0.02595 * 22 21 20 24 24 C 1.38162 * 120.05624 * 0.02562 * 23 22 21 25 25 C 1.50698 * 120.02696 * 179.97438 * 24 23 22 26 26 F 1.39897 * 109.47621 * 359.97438 * 25 24 23 27 27 F 1.39901 * 109.47263 * 120.00594 * 25 24 23 28 28 F 1.39906 * 109.47500 * 239.99896 * 25 24 23 29 29 H 1.08997 * 109.47347 * 295.03732 * 1 2 3 30 30 H 1.08993 * 109.47119 * 55.04493 * 1 2 3 31 31 H 1.08999 * 109.46983 * 175.04465 * 1 2 3 32 32 H 0.97007 * 119.99952 * 179.97438 * 7 6 4 33 33 H 1.00900 * 111.00412 * 38.95336 * 12 2 1 34 34 H 1.09002 * 109.46765 * 60.00112 * 13 12 2 35 35 H 1.09002 * 109.47042 * 300.00004 * 13 12 2 36 36 H 0.96697 * 114.00117 * 300.00041 * 16 14 13 37 37 H 1.08993 * 109.47347 * 64.99898 * 17 14 13 38 38 H 1.09001 * 109.46897 * 304.99914 * 17 14 13 39 39 H 1.07997 * 120.03013 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.97628 * 179.70561 * 21 20 19 41 41 H 1.08006 * 119.94311 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.97358 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3601 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5988 2.3951 -1.7821 10 1 2.1055 2.3992 -3.6928 11 1 1.1983 2.3274 -1.4450 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5333 3.5745 15 1 3.5904 -0.9273 3.3691 16 8 1.7080 -1.6128 3.8740 17 6 2.6599 0.4196 4.7697 18 8 3.2473 -0.2542 5.8847 19 6 3.3798 0.4569 7.0352 20 6 2.9484 1.7744 7.0915 21 6 3.0904 2.4970 8.2601 22 6 3.6557 1.9063 9.3754 23 6 4.0806 0.5918 9.3237 24 6 3.9418 -0.1349 8.1568 25 6 4.4057 -1.5676 8.1010 26 9 4.9376 -1.9344 9.3419 27 9 3.3218 -2.3972 7.7941 28 9 5.3891 -1.7014 7.1149 29 1 -0.3634 0.4349 0.9311 30 1 -0.3633 0.5887 -0.8422 31 1 -0.3633 -1.0238 -0.0888 32 1 2.9362 -0.1047 -4.2557 33 1 1.4496 -1.4980 1.4100 34 1 1.0870 0.6161 2.5526 35 1 2.7588 1.0462 2.1183 36 1 0.8021 -1.3353 4.0675 37 1 1.6526 0.7441 5.0307 38 1 3.2654 1.2879 4.5097 39 1 2.5065 2.2361 6.2209 40 1 2.7592 3.5241 8.3031 41 1 3.7654 2.4729 10.2883 42 1 4.5222 0.1327 10.1959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:21 Heat of formation + Delta-G solvation = -236.249087 kcal Electronic energy + Delta-G solvation = -28751.676186 eV Core-core repulsion = 24088.139910 eV Total energy + Delta-G solvation = -4663.536276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.13968 -48.68628 -48.59808 -41.41198 -39.45766 -38.26246 -36.97793 -34.40143 -33.20017 -32.35321 -31.23194 -29.86403 -27.25426 -26.95328 -26.06861 -23.47726 -23.11799 -22.39808 -21.82178 -19.90026 -19.48067 -19.40788 -19.19314 -18.56422 -17.67669 -17.59355 -16.85418 -16.41017 -16.25764 -16.01776 -15.71902 -15.58197 -15.45624 -15.37386 -15.15802 -15.05030 -14.79187 -14.76379 -14.61583 -14.38892 -14.09812 -13.87723 -13.64678 -13.61450 -13.55296 -12.92828 -12.71020 -12.60570 -12.60452 -12.26416 -12.11609 -11.99380 -11.79268 -11.73088 -11.28788 -10.98666 -10.66018 -10.31463 -9.41901 -8.97687 -8.25135 -6.28059 -0.08355 0.27902 1.34564 1.37229 1.46886 1.67126 1.89060 2.36310 2.48791 2.76747 3.03477 3.05344 3.37759 3.42168 3.47908 3.78436 3.83701 3.95952 4.04267 4.08342 4.18018 4.30153 4.31734 4.38684 4.43267 4.43766 4.70567 4.72881 4.73776 4.81973 4.99084 5.05980 5.11710 5.22588 5.38059 5.45338 5.64133 5.68972 6.05664 6.17566 6.68317 6.75351 6.78275 6.84835 7.36030 8.92867 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.002491 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.260254 B =11238.694023 C =11881.785431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.025 0.975 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.948 3.052 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.239 1.239 12 N -0.690 5.690 13 C 0.034 3.966 14 C 0.120 3.880 15 H 0.089 0.911 16 O -0.565 6.565 17 C 0.032 3.968 18 O -0.321 6.321 19 C 0.159 3.841 20 C -0.217 4.217 21 C -0.042 4.042 22 C -0.157 4.157 23 C -0.042 4.042 24 C -0.244 4.244 25 C 0.511 3.489 26 F -0.178 7.178 27 F -0.185 7.185 28 F -0.187 7.187 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.338 0.662 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 11.051 31.472 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.075 3.925 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.044 0.956 6 C -0.193 4.193 7 N -0.596 5.596 8 Si 0.772 3.228 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.162 1.162 12 N -0.322 5.322 13 C -0.096 4.096 14 C 0.060 3.940 15 H 0.107 0.893 16 O -0.372 6.372 17 C -0.043 4.043 18 O -0.234 6.234 19 C 0.112 3.888 20 C -0.235 4.235 21 C -0.059 4.059 22 C -0.175 4.175 23 C -0.060 4.060 24 C -0.246 4.246 25 C 0.457 3.543 26 F -0.159 7.159 27 F -0.166 7.166 28 F -0.169 7.169 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.175 0.825 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.014 10.552 30.971 32.719 hybrid contribution -1.021 0.292 -0.666 1.253 sum -1.007 10.844 30.305 32.203 Atomic orbital electron populations 1.22485 0.98723 1.00850 1.00278 1.19482 0.90916 0.93953 0.88116 0.94184 1.21208 1.42391 0.93905 0.96422 0.95641 1.25969 0.94543 1.04018 0.94748 1.70076 1.48755 1.38018 1.02729 0.85744 0.79970 0.79541 0.77577 1.19375 1.21551 1.16247 1.60521 1.58958 1.09673 1.03049 1.22540 1.00663 0.95852 0.90525 1.21825 0.94786 0.87160 0.90220 0.89307 1.86673 1.24202 1.34421 1.91893 1.23736 1.00004 0.96247 0.84287 1.86186 1.76982 1.41165 1.19090 1.18932 0.93099 0.91641 0.85147 1.21597 1.07160 0.92457 1.02329 1.21662 0.92448 1.00964 0.90862 1.21486 1.01031 0.94129 1.00805 1.21171 0.94895 0.94843 0.95102 1.19475 1.14774 0.93108 0.97243 1.18310 0.74905 0.87916 0.73120 1.93134 1.86915 1.93082 1.42815 1.93205 1.55378 1.75048 1.92993 1.93200 1.63747 1.96681 1.63249 0.92282 0.93907 0.93818 0.92661 0.84360 0.92996 0.90223 0.76669 0.88602 0.88823 0.82550 0.81488 0.81566 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.23 9.16 71.98 0.66 -5.57 16 2 C 0.18 8.14 2.23 44.17 0.10 8.24 16 3 H 0.04 1.73 4.95 -2.39 -0.01 1.72 16 4 C -0.50 -28.66 9.19 25.60 0.24 -28.43 16 5 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 6 C 0.00 0.20 5.47 84.66 0.46 0.67 16 7 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 8 Si 0.95 43.16 26.99 68.60 1.85 45.02 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.24 -9.64 6.82 99.48 0.68 -8.97 16 12 N -0.69 -26.81 6.23 -495.44 -3.09 -29.89 16 13 C 0.03 0.93 5.19 86.30 0.45 1.38 16 14 C 0.12 3.04 3.52 30.59 0.11 3.15 16 15 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 16 O -0.57 -15.22 12.64 -144.31 -1.82 -17.04 16 17 C 0.03 0.60 4.37 71.98 0.31 0.91 16 18 O -0.32 -7.78 9.01 -87.78 -0.79 -8.57 16 19 C 0.16 3.23 6.57 22.51 0.15 3.37 16 20 C -0.22 -2.90 9.04 22.37 0.20 -2.70 16 21 C -0.04 -0.36 10.04 22.26 0.22 -0.14 16 22 C -0.16 -1.40 10.04 22.28 0.22 -1.17 16 23 C -0.04 -0.58 9.43 22.25 0.21 -0.37 16 24 C -0.24 -5.01 5.38 -19.77 -0.11 -5.12 16 25 C 0.51 12.61 2.99 71.24 0.21 12.82 16 26 F -0.18 -3.86 15.97 44.97 0.72 -3.14 16 27 F -0.18 -5.20 16.96 44.97 0.76 -4.43 16 28 F -0.19 -5.35 16.94 44.97 0.76 -4.59 16 29 H 0.06 1.77 7.35 -2.39 -0.02 1.75 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 33 H 0.34 12.91 7.87 -89.69 -0.71 12.21 16 34 H 0.05 1.16 7.36 -2.39 -0.02 1.14 16 35 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 36 H 0.38 7.00 9.04 -74.06 -0.67 6.33 16 37 H 0.10 1.22 7.65 -2.39 -0.02 1.21 16 38 H 0.09 1.40 7.67 -2.39 -0.02 1.38 16 39 H 0.16 1.44 6.30 -2.91 -0.02 1.42 16 40 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.61 7.16 -2.91 -0.02 1.59 16 Total: -1.00 -75.91 362.69 1.81 -74.10 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.32 Total: 21.67 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 3.44 Total: -12.97 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -2.79 Total: -90.04 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -2.61 Total: -25.61 kcal Atomic # 9 Polarization: -14.41 SS G_CDS: 2.24 Total: -12.17 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.85 Total: 45.02 kcal Total: -75.91 1.81 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.149 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds