Wall clock time and date at job start Tue Mar 31 2020 18:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46900 * 2 1 4 4 C 1.50697 * 109.47511 * 120.00011 * 2 1 3 5 5 H 1.08000 * 120.00017 * 120.00103 * 4 2 1 6 6 C 1.37874 * 120.00241 * 300.00656 * 4 2 1 7 7 N 1.31516 * 119.99777 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46787 * 89.99669 * 8 6 4 10 10 H 1.48494 * 109.47549 * 209.99770 * 8 6 4 11 11 H 1.48500 * 109.46798 * 330.00529 * 8 6 4 12 12 N 1.46907 * 109.47597 * 240.00562 * 2 1 3 13 13 C 1.46895 * 111.00015 * 84.99281 * 12 2 1 14 14 C 1.53004 * 109.47186 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.46383 * 60.00208 * 14 13 12 16 16 O 1.42890 * 109.47173 * 300.00661 * 14 13 12 17 17 C 1.52997 * 109.46977 * 180.02562 * 14 13 12 18 18 O 1.42903 * 109.46782 * 185.00121 * 17 14 13 19 19 C 1.35899 * 117.00037 * 179.97438 * 18 17 14 20 20 C 1.38755 * 120.05583 * 0.25703 * 19 18 17 21 21 C 1.38120 * 119.94491 * 180.31790 * 20 19 18 22 22 C 1.38290 * 120.05467 * 359.68174 * 21 20 19 23 23 C 1.38243 * 120.11176 * 0.02562 * 22 21 20 24 24 C 1.38167 * 120.05381 * 0.02783 * 23 22 21 25 25 C 1.50706 * 120.02421 * 179.97438 * 24 23 22 26 26 F 1.39896 * 109.47293 * 0.02562 * 25 24 23 27 27 F 1.39902 * 109.46957 * 120.00027 * 25 24 23 28 28 F 1.39898 * 109.46958 * 239.99689 * 25 24 23 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47496 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.47524 * 59.99939 * 1 2 3 32 32 H 0.96999 * 120.00187 * 180.02562 * 7 6 4 33 33 H 1.00904 * 110.99163 * 321.04293 * 12 2 1 34 34 H 1.09001 * 109.46839 * 60.00458 * 13 12 2 35 35 H 1.08998 * 109.47566 * 300.00890 * 13 12 2 36 36 H 0.96703 * 114.00453 * 299.99355 * 16 14 13 37 37 H 1.08996 * 109.47354 * 65.00829 * 17 14 13 38 38 H 1.09001 * 109.47390 * 305.00428 * 17 14 13 39 39 H 1.07997 * 120.03141 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.97360 * 179.70393 * 21 20 19 41 41 H 1.08002 * 119.94657 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.97236 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4862 -2.5662 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 1 1.9203 -1.3564 -3.8031 16 8 3.9013 -1.0482 -3.3043 17 6 2.6622 0.4207 -4.7691 18 8 3.0301 -0.3093 -5.9411 19 6 3.1335 0.3943 -7.0992 20 6 2.8911 1.7605 -7.1063 21 6 2.9905 2.4722 -8.2858 22 6 3.3376 1.8255 -9.4578 23 6 3.5856 0.4655 -9.4522 24 6 3.4864 -0.2511 -8.2751 25 6 3.7563 -1.7338 -8.2699 26 9 4.0861 -2.1523 -9.5634 27 9 4.8204 -2.0111 -7.4050 28 9 2.6134 -2.4143 -7.8363 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7094 1.1616 3.4844 33 1 1.4496 -1.4978 -1.4101 34 1 2.7588 1.0464 -2.1181 35 1 1.0871 0.6165 -2.5525 36 1 4.5565 -0.3693 -3.0922 37 1 3.4044 1.1951 -4.5756 38 1 1.6863 0.8823 -4.9199 39 1 2.6204 2.2662 -6.1912 40 1 2.7972 3.5348 -8.2927 41 1 3.4152 2.3838 -10.3791 42 1 3.8561 -0.0374 -10.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:26 Heat of formation + Delta-G solvation = -212.076885 kcal Electronic energy + Delta-G solvation = -28644.008769 eV Core-core repulsion = 23981.520678 eV Total energy + Delta-G solvation = -4662.488091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18017 -47.74768 -47.57894 -40.67875 -38.42129 -37.09824 -35.36837 -32.60315 -32.45295 -30.96311 -30.11339 -28.11077 -26.15532 -25.25834 -24.74780 -22.56808 -22.40855 -21.35287 -20.22036 -19.09291 -18.50218 -18.48469 -17.84876 -16.85043 -16.60119 -16.30661 -15.61969 -15.46556 -15.02692 -14.92871 -14.74341 -14.48799 -14.46887 -14.07491 -14.03242 -13.83873 -13.77872 -13.77481 -13.28293 -13.13260 -12.89780 -12.64459 -12.62438 -12.05766 -11.77111 -11.61725 -11.45381 -11.33117 -10.95314 -10.84282 -10.68482 -10.57225 -10.18116 -10.11166 -9.70482 -9.68753 -9.02825 -8.75676 -8.38496 -7.28574 -6.01141 -4.04072 0.54015 0.89255 2.53447 2.70057 3.08861 3.32592 3.38648 3.43877 3.61369 3.87775 4.32247 4.35894 4.41567 4.46798 4.49793 4.63540 4.65025 4.84372 4.85869 4.99028 5.11398 5.25198 5.30765 5.31630 5.43363 5.61826 5.68258 5.74719 5.93072 5.98004 6.16688 6.20952 6.61479 6.77617 6.88940 7.02340 7.27511 7.68903 7.85280 7.90085 8.22196 8.46685 8.56538 9.03948 9.61598 11.06073 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002286 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.444108 B =12247.512595 C =12988.791759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.034 3.966 14 C 0.115 3.885 15 H 0.104 0.896 16 O -0.535 6.535 17 C 0.025 3.975 18 O -0.293 6.293 19 C 0.185 3.815 20 C -0.214 4.214 21 C -0.046 4.046 22 C -0.166 4.166 23 C -0.036 4.036 24 C -0.223 4.223 25 C 0.517 3.483 26 F -0.183 7.183 27 F -0.170 7.170 28 F -0.173 7.173 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.004 0.996 32 H 0.259 0.741 33 H 0.328 0.672 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.372 0.628 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 3.987 -26.207 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.097 4.097 14 C 0.055 3.945 15 H 0.122 0.878 16 O -0.339 6.339 17 C -0.050 4.050 18 O -0.205 6.205 19 C 0.137 3.863 20 C -0.233 4.233 21 C -0.065 4.065 22 C -0.184 4.184 23 C -0.054 4.054 24 C -0.225 4.225 25 C 0.463 3.537 26 F -0.165 7.165 27 F -0.151 7.151 28 F -0.154 7.154 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.218 0.782 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.958 3.351 -25.935 26.449 hybrid contribution -0.579 0.391 0.817 1.076 sum 3.379 3.743 -25.118 25.619 Atomic orbital electron populations 1.22452 1.00721 0.99336 1.00468 1.19197 0.89559 0.94325 0.86492 0.94997 1.21164 1.30122 1.12504 0.89488 0.91785 1.24955 0.95308 0.95234 0.99105 1.69879 1.37400 1.23296 1.23382 0.86484 0.78414 0.80115 0.82309 1.20750 1.21434 1.19858 1.60700 1.58364 1.08517 1.02619 1.22458 0.99171 0.96456 0.91597 1.21951 0.86851 0.96099 0.89623 0.87822 1.86656 1.18509 1.37113 1.91651 1.23879 1.00828 0.96191 0.84135 1.86247 1.82639 1.36920 1.14658 1.18679 0.91339 0.90630 0.85634 1.21341 1.08734 0.92566 1.00648 1.21213 0.93320 1.00223 0.91698 1.21053 1.04329 0.93991 0.99000 1.20888 0.94054 0.94398 0.96081 1.19360 1.16298 0.92321 0.94562 1.17978 0.74727 0.87698 0.73285 1.93137 1.92737 1.91743 1.38852 1.93250 1.57018 1.94760 1.70098 1.93228 1.50495 1.82100 1.89600 0.95199 0.89163 0.97745 0.93071 0.85499 0.91166 0.95340 0.78181 0.91029 0.90698 0.84184 0.84784 0.84747 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.94 37.15 0.33 -3.66 16 2 C 0.21 5.18 2.57 -68.87 -0.18 5.00 16 3 H 0.03 0.85 7.80 -51.92 -0.40 0.45 16 4 C -0.49 -13.59 8.84 -34.44 -0.30 -13.90 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.67 -13.78 6.10 -107.95 -0.66 -14.44 16 13 C 0.03 0.54 5.15 -3.82 -0.02 0.52 16 14 C 0.12 1.58 3.46 -26.73 -0.09 1.49 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 16 O -0.54 -8.33 13.17 -40.11 -0.53 -8.86 16 17 C 0.03 0.28 4.37 37.16 0.16 0.44 16 18 O -0.29 -3.74 9.01 -24.30 -0.22 -3.95 16 19 C 0.18 2.06 6.57 -39.22 -0.26 1.80 16 20 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 21 C -0.05 -0.32 10.04 -39.61 -0.40 -0.71 16 22 C -0.17 -1.09 10.04 -39.56 -0.40 -1.49 16 23 C -0.04 -0.29 9.43 -39.61 -0.37 -0.67 16 24 C -0.22 -2.42 5.38 -104.47 -0.56 -2.98 16 25 C 0.52 6.30 2.99 36.01 0.11 6.41 16 26 F -0.18 -1.99 15.97 2.25 0.04 -1.95 16 27 F -0.17 -2.35 16.96 2.25 0.04 -2.32 16 28 F -0.17 -2.35 16.94 2.25 0.04 -2.31 16 29 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 31 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.33 6.56 8.47 -39.29 -0.33 6.23 16 34 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 36 H 0.37 4.63 9.05 45.56 0.41 5.04 16 37 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 38 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.89 7.16 -52.49 -0.38 0.52 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -31.34 364.07 -7.20 -38.54 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.57 Total: 6.74 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.43 Total: -8.56 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.03 Total: -39.30 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.75 Total: -12.81 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.34 -7.20 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.538 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds