Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46900 * 2 1 4 4 C 1.50697 * 109.47511 * 120.00011 * 2 1 3 5 5 H 1.08000 * 120.00017 * 120.00103 * 4 2 1 6 6 C 1.37874 * 120.00241 * 300.00656 * 4 2 1 7 7 N 1.31516 * 119.99777 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46787 * 89.99669 * 8 6 4 10 10 H 1.48494 * 109.47549 * 209.99770 * 8 6 4 11 11 H 1.48500 * 109.46798 * 330.00529 * 8 6 4 12 12 N 1.46907 * 109.47597 * 240.00562 * 2 1 3 13 13 C 1.46895 * 111.00015 * 84.99281 * 12 2 1 14 14 C 1.53004 * 109.47186 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.46383 * 60.00208 * 14 13 12 16 16 O 1.42890 * 109.47173 * 300.00661 * 14 13 12 17 17 C 1.52997 * 109.46977 * 180.02562 * 14 13 12 18 18 O 1.42903 * 109.46782 * 185.00121 * 17 14 13 19 19 C 1.35899 * 117.00037 * 179.97438 * 18 17 14 20 20 C 1.38755 * 120.05583 * 0.25703 * 19 18 17 21 21 C 1.38120 * 119.94491 * 180.31790 * 20 19 18 22 22 C 1.38290 * 120.05467 * 359.68174 * 21 20 19 23 23 C 1.38243 * 120.11176 * 0.02562 * 22 21 20 24 24 C 1.38167 * 120.05381 * 0.02783 * 23 22 21 25 25 C 1.50706 * 120.02421 * 179.97438 * 24 23 22 26 26 F 1.39896 * 109.47293 * 0.02562 * 25 24 23 27 27 F 1.39902 * 109.46957 * 120.00027 * 25 24 23 28 28 F 1.39898 * 109.46958 * 239.99689 * 25 24 23 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47496 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.47524 * 59.99939 * 1 2 3 32 32 H 0.96999 * 120.00187 * 180.02562 * 7 6 4 33 33 H 1.00904 * 110.99163 * 321.04293 * 12 2 1 34 34 H 1.09001 * 109.46839 * 60.00458 * 13 12 2 35 35 H 1.08998 * 109.47566 * 300.00890 * 13 12 2 36 36 H 0.96703 * 114.00453 * 299.99355 * 16 14 13 37 37 H 1.08996 * 109.47354 * 65.00829 * 17 14 13 38 38 H 1.09001 * 109.47390 * 305.00428 * 17 14 13 39 39 H 1.07997 * 120.03141 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.97360 * 179.70393 * 21 20 19 41 41 H 1.08002 * 119.94657 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.97236 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4862 -2.5662 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 1 1.9203 -1.3564 -3.8031 16 8 3.9013 -1.0482 -3.3043 17 6 2.6622 0.4207 -4.7691 18 8 3.0301 -0.3093 -5.9411 19 6 3.1335 0.3943 -7.0992 20 6 2.8911 1.7605 -7.1063 21 6 2.9905 2.4722 -8.2858 22 6 3.3376 1.8255 -9.4578 23 6 3.5856 0.4655 -9.4522 24 6 3.4864 -0.2511 -8.2751 25 6 3.7563 -1.7338 -8.2699 26 9 4.0861 -2.1523 -9.5634 27 9 4.8204 -2.0111 -7.4050 28 9 2.6134 -2.4143 -7.8363 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7094 1.1616 3.4844 33 1 1.4496 -1.4978 -1.4101 34 1 2.7588 1.0464 -2.1181 35 1 1.0871 0.6165 -2.5525 36 1 4.5565 -0.3693 -3.0922 37 1 3.4044 1.1951 -4.5756 38 1 1.6863 0.8823 -4.9199 39 1 2.6204 2.2662 -6.1912 40 1 2.7972 3.5348 -8.2927 41 1 3.4152 2.3838 -10.3791 42 1 3.8561 -0.0374 -10.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = -233.625401 kcal Electronic energy + Delta-G solvation = -28644.943182 eV Core-core repulsion = 23981.520678 eV Total energy + Delta-G solvation = -4663.422505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.13396 -48.67983 -48.59133 -41.40660 -39.36747 -38.19365 -36.95674 -34.42270 -33.18132 -32.04971 -31.09716 -29.54728 -27.24919 -26.94662 -26.01162 -23.49362 -23.11958 -22.43663 -22.04900 -19.88096 -19.47487 -19.40144 -18.75769 -18.33183 -17.71760 -17.48077 -16.83208 -16.48384 -16.09271 -16.01627 -15.74336 -15.56706 -15.44374 -15.35263 -15.18375 -15.04630 -14.78481 -14.75483 -14.49457 -14.40304 -13.98509 -13.64475 -13.58973 -13.52619 -13.22384 -12.87047 -12.70584 -12.60914 -12.37595 -12.23272 -12.14699 -12.09304 -11.95478 -11.73751 -11.18320 -10.83164 -10.48537 -10.31452 -9.41915 -8.93714 -8.10534 -6.20770 -0.08245 0.27907 1.42679 1.43578 1.54382 1.67401 1.88739 2.44309 2.48858 2.77010 3.04300 3.18067 3.37462 3.42862 3.54381 3.80613 3.84778 3.88420 4.07290 4.10016 4.18258 4.31123 4.36454 4.37907 4.43639 4.66521 4.73605 4.76384 4.87236 5.03050 5.06366 5.08950 5.22700 5.38218 5.40239 5.64121 5.69849 5.81448 6.16059 6.27411 6.63461 6.76434 6.90413 6.94838 7.49275 8.94822 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002286 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.444108 B =12247.512595 C =12988.791759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.515 4.515 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.682 5.682 13 C 0.038 3.962 14 C 0.123 3.877 15 H 0.093 0.907 16 O -0.559 6.559 17 C 0.033 3.967 18 O -0.319 6.319 19 C 0.158 3.842 20 C -0.218 4.218 21 C -0.042 4.042 22 C -0.156 4.156 23 C -0.042 4.042 24 C -0.243 4.243 25 C 0.512 3.488 26 F -0.178 7.178 27 F -0.185 7.185 28 F -0.186 7.186 29 H 0.029 0.971 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.383 0.617 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 5.522 -27.784 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.025 0.975 4 C -0.554 4.554 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.312 5.312 13 C -0.092 4.092 14 C 0.063 3.937 15 H 0.111 0.889 16 O -0.365 6.365 17 C -0.043 4.043 18 O -0.232 6.232 19 C 0.112 3.888 20 C -0.237 4.237 21 C -0.060 4.060 22 C -0.174 4.174 23 C -0.059 4.059 24 C -0.246 4.246 25 C 0.458 3.542 26 F -0.159 7.159 27 F -0.167 7.167 28 F -0.168 7.168 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.185 0.815 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.012 4.893 -27.536 28.254 hybrid contribution -0.571 -0.054 1.185 1.316 sum 3.440 4.839 -26.352 27.012 Atomic orbital electron populations 1.22263 0.99989 0.99238 1.00318 1.18938 0.89989 0.92807 0.87354 0.97456 1.21463 1.30288 1.12424 0.91241 0.93111 1.25669 0.95480 0.95914 1.01747 1.69989 1.38014 1.24208 1.23988 0.85561 0.78016 0.78992 0.79060 1.20282 1.20806 1.19722 1.60534 1.58141 1.09244 1.03262 1.22472 1.00031 0.95883 0.90791 1.21779 0.85840 0.96076 0.90001 0.88928 1.86614 1.19486 1.38526 1.91892 1.23723 1.02523 0.95253 0.82757 1.86175 1.83430 1.38124 1.15512 1.18931 0.93107 0.91764 0.85036 1.21590 1.08412 0.91545 1.02140 1.21654 0.91682 1.01725 0.90900 1.21485 1.02279 0.93306 1.00329 1.21178 0.93832 0.95292 0.95643 1.19475 1.18048 0.91260 0.95771 1.18280 0.73962 0.88812 0.73115 1.93135 1.92650 1.91847 1.38267 1.93210 1.57725 1.94988 1.70733 1.93192 1.51151 1.82595 1.89821 0.95169 0.91921 0.95151 0.92977 0.85304 0.90863 0.94127 0.76877 0.89187 0.88827 0.82832 0.81572 0.81507 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.41 8.94 71.98 0.64 -6.77 16 2 C 0.22 10.73 2.57 44.17 0.11 10.84 16 3 H 0.01 0.40 7.80 -2.38 -0.02 0.39 16 4 C -0.52 -28.71 8.84 25.60 0.23 -28.48 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.56 5.30 84.65 0.45 1.00 16 7 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 N -0.68 -27.98 6.10 -495.44 -3.02 -31.00 16 13 C 0.04 1.18 5.15 86.31 0.44 1.63 16 14 C 0.12 3.32 3.46 30.59 0.11 3.43 16 15 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 16 O -0.56 -17.42 13.17 -144.31 -1.90 -19.32 16 17 C 0.03 0.67 4.37 71.98 0.31 0.98 16 18 O -0.32 -8.04 9.01 -87.74 -0.79 -8.83 16 19 C 0.16 3.37 6.57 22.51 0.15 3.52 16 20 C -0.22 -3.23 9.04 22.37 0.20 -3.02 16 21 C -0.04 -0.41 10.04 22.25 0.22 -0.19 16 22 C -0.16 -1.50 10.04 22.28 0.22 -1.28 16 23 C -0.04 -0.59 9.43 22.25 0.21 -0.38 16 24 C -0.24 -5.11 5.38 -19.77 -0.11 -5.22 16 25 C 0.51 12.67 2.99 71.24 0.21 12.88 16 26 F -0.18 -3.84 15.97 44.97 0.72 -3.12 16 27 F -0.19 -5.30 16.96 44.97 0.76 -4.54 16 28 F -0.19 -5.21 16.94 44.97 0.76 -4.45 16 29 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 31 H 0.03 1.21 7.45 -2.39 -0.02 1.19 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.33 13.22 8.47 -89.69 -0.76 12.46 16 34 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 35 H 0.04 1.18 7.44 -2.39 -0.02 1.16 16 36 H 0.38 9.49 9.05 -74.05 -0.67 8.82 16 37 H 0.09 1.47 7.65 -2.39 -0.02 1.46 16 38 H 0.09 1.53 7.67 -2.39 -0.02 1.51 16 39 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 40 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.16 1.65 7.16 -2.91 -0.02 1.63 16 Total: -1.00 -68.64 364.07 1.86 -66.78 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.35 Total: 21.60 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.41 Total: -11.06 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.78 Total: -83.32 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -2.69 Total: -28.15 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 2.24 Total: -12.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.64 1.86 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.843 kcal (2) G-P(sol) polarization free energy of solvation -68.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds