Wall clock time and date at job start Tue Mar 31 2020 18:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47237 * 89.99831 * 8 6 4 10 10 H 1.48509 * 109.46969 * 209.99833 * 8 6 4 11 11 H 1.48500 * 109.47091 * 329.99669 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.47495 * 305.00162 * 14 13 12 16 16 O 1.42905 * 109.46911 * 65.00374 * 14 13 12 17 17 C 1.53000 * 109.47125 * 184.99886 * 14 13 12 18 18 O 1.42895 * 109.47077 * 174.99953 * 17 14 13 19 19 C 1.35903 * 116.99942 * 179.97438 * 18 17 14 20 20 C 1.38749 * 120.05548 * 0.02562 * 19 18 17 21 21 C 1.38127 * 119.94538 * 179.97438 * 20 19 18 22 22 C 1.38286 * 120.05515 * 0.02562 * 21 20 19 23 23 C 1.38238 * 120.11033 * 359.97438 * 22 21 20 24 24 C 1.38168 * 120.05936 * 359.68309 * 23 22 21 25 25 C 1.50696 * 120.03388 * 180.29655 * 24 23 22 26 26 F 1.39902 * 109.47152 * 0.32062 * 25 24 23 27 27 F 1.39905 * 109.47521 * 120.31921 * 25 24 23 28 28 F 1.39898 * 109.47383 * 240.32249 * 25 24 23 29 29 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 30 30 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 31 31 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 33 33 H 1.00902 * 111.00273 * 208.95722 * 12 2 1 34 34 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 35 35 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 36 36 H 0.96693 * 114.00253 * 59.99591 * 16 14 13 37 37 H 1.08994 * 109.47370 * 295.00462 * 17 14 13 38 38 H 1.09006 * 109.46810 * 55.00266 * 17 14 13 39 39 H 1.08003 * 120.03132 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.97429 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.94627 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.97650 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3441 -0.9489 5.1124 11 1 2.4877 -2.5653 3.7123 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 1 3.5521 -1.0012 -3.3388 16 8 1.6513 -1.5391 -3.9442 17 6 2.7802 0.4458 -4.7355 18 8 3.3691 -0.2362 -5.8446 19 6 3.6007 0.4952 -6.9663 20 6 3.2686 1.8420 -6.9987 21 6 3.5056 2.5833 -8.1398 22 6 4.0729 1.9842 -9.2496 23 6 4.4047 0.6426 -9.2198 24 6 4.1762 -0.1017 -8.0784 25 6 4.5443 -1.5626 -8.0443 26 9 5.1032 -1.9315 -9.2727 27 9 5.4743 -1.7856 -7.0232 28 9 3.3973 -2.3272 -7.8056 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7085 1.1613 3.4844 33 1 2.9173 -1.1206 -1.0286 34 1 1.0872 0.6162 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 0.7762 -1.1937 -4.1675 37 1 1.8104 0.8474 -5.0293 38 1 3.4319 1.2619 -4.4232 39 1 2.8251 2.3103 -6.1324 40 1 3.2468 3.6315 -8.1657 41 1 4.2570 2.5654 -10.1410 42 1 4.8473 0.1768 -10.0879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:30 Heat of formation + Delta-G solvation = -213.285812 kcal Electronic energy + Delta-G solvation = -28643.240563 eV Core-core repulsion = 23980.700049 eV Total energy + Delta-G solvation = -4662.540514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.17700 -47.74384 -47.57640 -40.67771 -38.42119 -37.08154 -35.30760 -32.63371 -32.46170 -30.95649 -30.10094 -28.16556 -26.15506 -25.47002 -24.68788 -22.58883 -22.40627 -21.34794 -19.85024 -19.08755 -18.49864 -18.48273 -17.83839 -16.92553 -16.61139 -16.41052 -15.62171 -15.46625 -15.16700 -14.90339 -14.72338 -14.48633 -14.46901 -14.06888 -13.97730 -13.79390 -13.77566 -13.73441 -13.37812 -13.24393 -12.89989 -12.82142 -12.47953 -12.05027 -11.80769 -11.55210 -11.38797 -11.32244 -10.96513 -10.81867 -10.64145 -10.46116 -10.18485 -10.15916 -9.70229 -9.66942 -8.88280 -8.75573 -8.51718 -7.33928 -6.07272 -4.13619 0.54149 0.89431 2.53671 2.70207 3.09022 3.27437 3.34307 3.39068 3.61626 3.87927 4.31710 4.36089 4.37885 4.45575 4.48574 4.63050 4.65120 4.84533 4.85212 4.99219 5.11754 5.24445 5.25297 5.31737 5.45770 5.60985 5.68076 5.74848 5.93216 5.99718 6.17084 6.21950 6.79373 6.89247 7.06217 7.16135 7.41811 7.73672 7.80837 7.88317 8.21430 8.30692 8.59461 8.96271 9.52685 10.99155 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002294 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.591598 B =12202.356494 C =12874.488240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.035 3.965 14 C 0.115 3.885 15 H 0.106 0.894 16 O -0.537 6.537 17 C 0.025 3.975 18 O -0.293 6.293 19 C 0.185 3.815 20 C -0.214 4.214 21 C -0.046 4.046 22 C -0.166 4.166 23 C -0.036 4.036 24 C -0.223 4.223 25 C 0.517 3.483 26 F -0.183 7.183 27 F -0.173 7.173 28 F -0.170 7.170 29 H 0.081 0.919 30 H 0.002 0.998 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.333 0.667 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.370 0.630 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 4.519 -25.471 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.309 5.309 13 C -0.096 4.096 14 C 0.055 3.945 15 H 0.124 0.876 16 O -0.340 6.340 17 C -0.050 4.050 18 O -0.205 6.205 19 C 0.137 3.863 20 C -0.233 4.233 21 C -0.065 4.065 22 C -0.184 4.184 23 C -0.054 4.054 24 C -0.225 4.225 25 C 0.463 3.537 26 F -0.165 7.165 27 F -0.154 7.154 28 F -0.151 7.151 29 H 0.099 0.901 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.216 0.784 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.535 3.735 -25.298 26.164 hybrid contribution 0.578 0.666 1.083 1.396 sum 6.113 4.401 -24.215 25.360 Atomic orbital electron populations 1.21718 0.97813 0.99494 0.99223 1.19132 0.92696 0.92183 0.85532 0.98270 1.21263 1.31517 1.12587 0.90380 0.92099 1.24921 0.94982 0.95006 0.99110 1.69892 1.36588 1.22965 1.23540 0.86501 0.78445 0.80153 0.82350 1.20749 1.21170 1.19755 1.60627 1.32446 1.32376 1.05437 1.22473 1.00328 0.94580 0.92186 1.21976 0.94402 0.88533 0.89600 0.87622 1.86668 1.23610 1.34198 1.89551 1.23881 0.98202 0.97005 0.85956 1.86247 1.75854 1.37855 1.20503 1.18681 0.91206 0.90367 0.86032 1.21342 1.07897 0.92791 1.01261 1.21214 0.93448 0.99986 0.91803 1.21049 1.03206 0.94480 0.99634 1.20888 0.94828 0.94039 0.95662 1.19361 1.13493 0.93116 0.96566 1.17978 0.74974 0.87377 0.73360 1.93138 1.85930 1.92965 1.44439 1.93232 1.66521 1.95611 1.60033 1.93248 1.49884 1.77910 1.94106 0.90072 0.97910 0.94779 0.92894 0.84930 0.91175 0.95291 0.78373 0.91091 0.90625 0.84186 0.84783 0.84746 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.19 37.16 0.34 -2.69 16 2 C 0.21 5.25 2.60 -68.86 -0.18 5.07 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.13 8.59 -34.43 -0.30 -14.43 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.05 6.25 -107.95 -0.67 -14.72 16 13 C 0.04 0.56 5.12 -3.82 -0.02 0.54 16 14 C 0.12 1.60 3.43 -26.73 -0.09 1.50 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 O -0.54 -8.24 13.25 -40.08 -0.53 -8.77 16 17 C 0.03 0.28 4.37 37.16 0.16 0.44 16 18 O -0.29 -3.75 9.01 -24.29 -0.22 -3.97 16 19 C 0.18 2.07 6.57 -39.22 -0.26 1.81 16 20 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 21 C -0.05 -0.32 10.04 -39.60 -0.40 -0.72 16 22 C -0.17 -1.10 10.04 -39.56 -0.40 -1.50 16 23 C -0.04 -0.30 9.43 -39.61 -0.37 -0.67 16 24 C -0.22 -2.43 5.38 -104.47 -0.56 -2.99 16 25 C 0.52 6.32 2.99 36.00 0.11 6.43 16 26 F -0.18 -2.00 15.97 2.25 0.04 -1.96 16 27 F -0.17 -2.36 16.95 2.25 0.04 -2.32 16 28 F -0.17 -2.35 16.95 2.25 0.04 -2.32 16 29 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 30 H 0.00 0.04 7.45 -51.93 -0.39 -0.35 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.33 6.87 8.22 -39.29 -0.32 6.55 16 34 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 35 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 36 H 0.37 4.44 9.04 45.56 0.41 4.85 16 37 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 38 H 0.08 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.14 1.01 6.30 -52.48 -0.33 0.68 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.90 7.16 -52.48 -0.38 0.52 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -31.32 363.85 -7.19 -38.50 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.55 Total: 6.29 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.41 Total: -7.81 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.05 Total: -39.27 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.75 Total: -12.75 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.11 Total: -6.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.32 -7.19 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.783 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds