Wall clock time and date at job start Tue Mar 31 2020 18:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47237 * 89.99831 * 8 6 4 10 10 H 1.48509 * 109.46969 * 209.99833 * 8 6 4 11 11 H 1.48500 * 109.47091 * 329.99669 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.47495 * 305.00162 * 14 13 12 16 16 O 1.42905 * 109.46911 * 65.00374 * 14 13 12 17 17 C 1.53000 * 109.47125 * 184.99886 * 14 13 12 18 18 O 1.42895 * 109.47077 * 174.99953 * 17 14 13 19 19 C 1.35903 * 116.99942 * 179.97438 * 18 17 14 20 20 C 1.38749 * 120.05548 * 0.02562 * 19 18 17 21 21 C 1.38127 * 119.94538 * 179.97438 * 20 19 18 22 22 C 1.38286 * 120.05515 * 0.02562 * 21 20 19 23 23 C 1.38238 * 120.11033 * 359.97438 * 22 21 20 24 24 C 1.38168 * 120.05936 * 359.68309 * 23 22 21 25 25 C 1.50696 * 120.03388 * 180.29655 * 24 23 22 26 26 F 1.39902 * 109.47152 * 0.32062 * 25 24 23 27 27 F 1.39905 * 109.47521 * 120.31921 * 25 24 23 28 28 F 1.39898 * 109.47383 * 240.32249 * 25 24 23 29 29 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 30 30 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 31 31 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 33 33 H 1.00902 * 111.00273 * 208.95722 * 12 2 1 34 34 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 35 35 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 36 36 H 0.96693 * 114.00253 * 59.99591 * 16 14 13 37 37 H 1.08994 * 109.47370 * 295.00462 * 17 14 13 38 38 H 1.09006 * 109.46810 * 55.00266 * 17 14 13 39 39 H 1.08003 * 120.03132 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.97429 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.94627 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.97650 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3441 -0.9489 5.1124 11 1 2.4877 -2.5653 3.7123 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 1 3.5521 -1.0012 -3.3388 16 8 1.6513 -1.5391 -3.9442 17 6 2.7802 0.4458 -4.7355 18 8 3.3691 -0.2362 -5.8446 19 6 3.6007 0.4952 -6.9663 20 6 3.2686 1.8420 -6.9987 21 6 3.5056 2.5833 -8.1398 22 6 4.0729 1.9842 -9.2496 23 6 4.4047 0.6426 -9.2198 24 6 4.1762 -0.1017 -8.0784 25 6 4.5443 -1.5626 -8.0443 26 9 5.1032 -1.9315 -9.2727 27 9 5.4743 -1.7856 -7.0232 28 9 3.3973 -2.3272 -7.8056 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7085 1.1613 3.4844 33 1 2.9173 -1.1206 -1.0286 34 1 1.0872 0.6162 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 0.7762 -1.1937 -4.1675 37 1 1.8104 0.8474 -5.0293 38 1 3.4319 1.2619 -4.4232 39 1 2.8251 2.3103 -6.1324 40 1 3.2468 3.6315 -8.1657 41 1 4.2570 2.5654 -10.1410 42 1 4.8473 0.1768 -10.0879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:30 Heat of formation + Delta-G solvation = -234.870472 kcal Electronic energy + Delta-G solvation = -28644.176544 eV Core-core repulsion = 23980.700049 eV Total energy + Delta-G solvation = -4663.476495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.13512 -48.68031 -48.59311 -41.41133 -39.36694 -38.17248 -36.92994 -34.44254 -33.18333 -32.05355 -31.10895 -29.63758 -27.39572 -26.94700 -26.03562 -23.53828 -23.11958 -22.39689 -21.72437 -19.88469 -19.47638 -19.40302 -18.82333 -18.42604 -17.72011 -17.51130 -16.90854 -16.47533 -16.15084 -16.03348 -15.73261 -15.50673 -15.40057 -15.30567 -15.20471 -15.04848 -14.89981 -14.78597 -14.75575 -14.25606 -13.99786 -13.68784 -13.63534 -13.40635 -13.14075 -12.83892 -12.69111 -12.60305 -12.33957 -12.23777 -12.19118 -12.09799 -11.98733 -11.73787 -11.02707 -10.83116 -10.57957 -10.31651 -9.42277 -9.03972 -8.15420 -6.28881 -0.08501 0.27666 1.40658 1.42496 1.52945 1.67168 1.88184 2.40675 2.48636 2.76834 3.04036 3.13392 3.36693 3.42614 3.52165 3.79736 3.84183 3.87297 4.06135 4.09155 4.17667 4.30859 4.35690 4.36157 4.43267 4.69938 4.73403 4.82175 5.01785 5.06095 5.07154 5.21140 5.22511 5.37992 5.46149 5.63491 5.65813 5.85066 6.15759 6.22176 6.43828 6.73875 6.87091 6.98029 7.41549 8.90092 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002294 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.591598 B =12202.356494 C =12874.488240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.217 3.783 3 H -0.025 1.025 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.039 3.961 14 C 0.124 3.876 15 H 0.091 0.909 16 O -0.559 6.559 17 C 0.033 3.967 18 O -0.319 6.319 19 C 0.158 3.842 20 C -0.218 4.218 21 C -0.042 4.042 22 C -0.156 4.156 23 C -0.041 4.041 24 C -0.243 4.243 25 C 0.512 3.488 26 F -0.178 7.178 27 F -0.187 7.187 28 F -0.185 7.185 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.331 0.669 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.383 0.617 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 6.026 -26.994 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.008 1.008 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.313 5.313 13 C -0.091 4.091 14 C 0.064 3.936 15 H 0.109 0.891 16 O -0.365 6.365 17 C -0.043 4.043 18 O -0.232 6.232 19 C 0.111 3.889 20 C -0.237 4.237 21 C -0.060 4.060 22 C -0.174 4.174 23 C -0.059 4.059 24 C -0.245 4.245 25 C 0.458 3.542 26 F -0.159 7.159 27 F -0.168 7.168 28 F -0.166 7.166 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.232 0.768 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.185 0.815 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.750 5.248 -26.849 27.955 hybrid contribution 0.526 0.232 1.429 1.541 sum 6.277 5.480 -25.420 26.750 Atomic orbital electron populations 1.21543 0.97609 0.98784 0.99234 1.18926 0.92818 0.90813 0.86604 1.00778 1.21605 1.31734 1.12702 0.91822 0.92606 1.25690 0.95145 0.95696 1.01922 1.70004 1.37315 1.23998 1.24221 0.85522 0.78091 0.78977 0.78830 1.20008 1.20723 1.19591 1.60527 1.32440 1.33152 1.05219 1.22505 1.01155 0.94176 0.91313 1.21755 0.93298 0.88499 0.90028 0.89125 1.86628 1.24772 1.35420 1.89660 1.23721 0.99759 0.95952 0.84822 1.86175 1.76631 1.39072 1.21363 1.18935 0.92819 0.91490 0.85615 1.21591 1.07701 0.91798 1.02601 1.21656 0.92030 1.01369 0.90898 1.21483 1.01384 0.93814 1.00700 1.21179 0.94734 0.94831 0.95190 1.19476 1.15049 0.92168 0.97852 1.18280 0.74353 0.88399 0.73139 1.93136 1.85801 1.93060 1.43896 1.93195 1.67011 1.95799 1.60795 1.93208 1.50656 1.78517 1.94238 0.92476 0.95424 0.95664 0.92768 0.85169 0.90367 0.94615 0.76824 0.88946 0.89039 0.82842 0.81563 0.81492 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 9.19 71.98 0.66 -4.88 16 2 C 0.22 10.84 2.60 44.17 0.11 10.95 16 3 H -0.03 -1.37 7.80 -2.39 -0.02 -1.39 16 4 C -0.54 -29.74 8.59 25.60 0.22 -29.52 16 5 H 0.06 3.05 7.62 -2.91 -0.02 3.03 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.68 -28.39 6.25 -495.43 -3.10 -31.49 16 13 C 0.04 1.21 5.12 86.30 0.44 1.66 16 14 C 0.12 3.39 3.43 30.59 0.10 3.50 16 15 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 16 O -0.56 -17.01 13.25 -144.34 -1.91 -18.93 16 17 C 0.03 0.67 4.37 71.98 0.31 0.99 16 18 O -0.32 -8.09 9.01 -87.82 -0.79 -8.88 16 19 C 0.16 3.39 6.57 22.51 0.15 3.53 16 20 C -0.22 -3.25 9.04 22.37 0.20 -3.05 16 21 C -0.04 -0.42 10.04 22.25 0.22 -0.19 16 22 C -0.16 -1.51 10.04 22.28 0.22 -1.28 16 23 C -0.04 -0.59 9.43 22.25 0.21 -0.38 16 24 C -0.24 -5.14 5.38 -19.77 -0.11 -5.24 16 25 C 0.51 12.72 2.99 71.23 0.21 12.93 16 26 F -0.18 -3.85 15.97 44.97 0.72 -3.13 16 27 F -0.19 -5.28 16.95 44.97 0.76 -4.52 16 28 F -0.18 -5.28 16.95 44.97 0.76 -4.51 16 29 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 30 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 31 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 33 H 0.33 13.87 8.22 -89.69 -0.74 13.14 16 34 H 0.08 2.33 7.44 -2.39 -0.02 2.32 16 35 H 0.04 1.10 8.06 -2.38 -0.02 1.08 16 36 H 0.38 8.91 9.04 -74.06 -0.67 8.24 16 37 H 0.09 1.48 7.66 -2.39 -0.02 1.46 16 38 H 0.09 1.57 7.66 -2.38 -0.02 1.55 16 39 H 0.15 1.76 6.30 -2.91 -0.02 1.74 16 40 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.16 1.66 7.16 -2.91 -0.02 1.64 16 Total: -1.00 -68.56 363.85 1.80 -66.76 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.33 Total: 20.82 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.42 Total: -9.73 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.85 Total: -83.43 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -2.70 Total: -27.81 kcal Atomic # 9 Polarization: -14.41 SS G_CDS: 2.24 Total: -12.17 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.56 1.80 -66.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.113 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds