Wall clock time and date at job start Tue Mar 31 2020 17:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47166 * 2 1 4 4 C 1.31882 * 124.30668 * 89.99757 * 3 2 1 5 5 C 1.45078 * 114.81701 * 180.02562 * 4 3 2 6 6 C 1.39759 * 111.99456 * 0.21005 * 5 4 3 7 7 N 1.33900 * 119.10793 * 180.28930 * 6 5 4 8 8 C 1.31282 * 121.03437 * 359.74184 * 7 6 5 9 9 C 1.50710 * 118.90543 * 179.97438 * 8 7 6 10 10 N 1.32082 * 122.18703 * 0.02562 * 8 7 6 11 11 C 1.32471 * 121.18882 * 359.97438 * 10 8 7 12 12 N 1.38320 * 120.53425 * 179.97438 * 11 10 8 13 13 C 1.47902 * 111.00442 * 120.12068 * 12 11 10 14 14 C 1.53990 * 107.05921 * 145.84489 * 13 12 11 15 15 C 1.54595 * 105.14359 * 358.77715 * 14 13 12 16 16 O 1.42902 * 110.72322 * 96.39594 * 15 14 13 17 17 C 1.50690 * 110.72876 * 219.68475 * 15 14 13 18 18 H 1.08001 * 120.00415 * 117.54322 * 17 15 14 19 19 C 1.37877 * 119.99838 * 297.54371 * 17 15 14 20 20 N 1.31512 * 120.00423 * 3.58645 * 19 17 15 21 21 Si 1.86804 * 119.99935 * 183.58780 * 19 17 15 22 22 H 1.48502 * 109.47302 * 85.00681 * 21 19 17 23 23 H 1.48499 * 109.47211 * 205.00518 * 21 19 17 24 24 H 1.48494 * 109.47260 * 325.00698 * 21 19 17 25 25 C 1.48538 * 111.00247 * 237.52131 * 12 11 10 26 26 S 1.75361 * 124.30294 * 270.49019 * 3 2 1 27 27 H 1.08999 * 109.47042 * 300.00294 * 1 2 3 28 28 H 1.09004 * 109.47104 * 60.00180 * 1 2 3 29 29 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47042 * 239.99706 * 2 1 3 31 31 H 1.09004 * 109.47104 * 119.99820 * 2 1 3 32 32 H 1.08002 * 122.59076 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46943 * 270.02230 * 9 8 7 34 34 H 1.08997 * 109.46695 * 30.02385 * 9 8 7 35 35 H 1.09001 * 109.46586 * 150.02289 * 9 8 7 36 36 H 1.09005 * 109.91517 * 26.49794 * 13 12 11 37 37 H 1.09002 * 110.08488 * 265.29356 * 13 12 11 38 38 H 1.09000 * 110.31279 * 117.69558 * 14 13 12 39 39 H 1.08999 * 110.31310 * 239.86289 * 14 13 12 40 40 H 0.96699 * 113.99682 * 54.66732 * 16 15 14 41 41 H 0.96994 * 120.00352 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.66605 * 318.70957 * 25 12 11 43 43 H 1.08999 * 110.66800 * 81.84038 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2801 2.1216 1.0894 5 6 2.7565 3.4709 0.8502 6 6 2.8525 3.7579 -0.5142 7 7 3.2847 4.9661 -0.8969 8 6 3.6121 5.8792 -0.0123 9 6 4.0934 7.2229 -0.4963 10 7 3.5347 5.6591 1.2878 11 6 3.1183 4.4947 1.7628 12 7 3.0429 4.2787 3.1270 13 6 1.6591 3.9555 3.5369 14 6 1.7555 2.9516 4.7006 15 6 3.2691 2.7068 4.8985 16 8 3.7842 3.5396 5.9392 17 6 3.5405 1.2540 5.1924 18 1 4.1430 0.6689 4.5134 19 6 3.0195 0.6715 6.3284 20 7 2.2282 1.3636 7.1186 21 14 3.4378 -1.1008 6.7451 22 1 4.7246 -1.1449 7.4850 23 1 2.3613 -1.6780 7.5896 24 1 3.5599 -1.8883 5.4921 25 6 3.8674 3.1097 3.5272 26 16 2.3501 2.3567 -1.4486 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1391 1.7219 2.0828 33 1 5.1768 7.2001 -0.6136 34 1 3.6287 7.4512 -1.4554 35 1 3.8226 7.9890 0.2303 36 1 1.1201 3.5062 2.7028 37 1 1.1459 4.8587 3.8672 38 1 1.3198 3.3772 5.6046 39 1 1.2527 2.0204 4.4397 40 1 3.3146 3.4541 6.7801 41 1 1.8614 0.9537 7.9175 42 1 3.7597 2.2985 2.8072 43 1 4.9140 3.3952 3.6330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603398722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:42 Heat of formation + Delta-G solvation = 25.935284 kcal Electronic energy + Delta-G solvation = -27131.998293 eV Core-core repulsion = 23496.733547 eV Total energy + Delta-G solvation = -3635.264746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.27392 -38.63808 -36.93502 -35.23448 -33.74303 -32.66000 -32.23621 -30.85220 -29.27998 -28.28432 -27.21396 -25.07664 -24.43322 -23.62257 -22.28804 -20.97771 -20.18411 -19.66497 -17.97194 -17.69510 -16.70905 -16.12787 -15.73650 -15.37514 -14.95531 -14.51942 -14.40738 -14.12625 -13.93237 -13.82178 -13.46393 -13.28175 -12.95036 -12.64726 -12.59156 -12.45614 -12.19687 -11.95454 -11.68856 -11.43715 -11.37794 -11.32005 -11.19777 -10.90420 -10.86131 -10.77913 -10.68413 -10.48737 -10.40037 -9.94744 -9.37002 -9.30086 -8.74478 -8.68637 -8.23482 -8.10230 -8.07070 -6.30014 -4.38686 0.41660 0.97295 1.09782 1.79952 2.14701 3.17307 3.24760 3.26312 3.58921 3.66587 4.09271 4.23268 4.31605 4.67037 4.78974 4.94915 4.98660 5.06030 5.16745 5.27805 5.45254 5.50228 5.58393 5.60286 5.66241 5.68931 5.74976 5.79064 5.82583 5.94438 6.03044 6.07733 6.16578 6.22843 6.26720 6.39806 6.66763 6.79735 6.94184 7.06130 7.28445 7.34319 7.50897 7.70365 8.05316 8.23445 8.63285 9.30705 9.41848 10.77322 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.004798 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.493809 B = 5834.008493 C = 7607.496180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.163 4.163 4 C -0.097 4.097 5 C -0.212 4.212 6 C 0.099 3.901 7 N -0.505 5.505 8 C 0.338 3.662 9 C -0.079 4.079 10 N -0.507 5.507 11 C 0.425 3.575 12 N -0.477 5.477 13 C 0.042 3.958 14 C -0.127 4.127 15 C 0.263 3.737 16 O -0.576 6.576 17 C -0.540 4.540 18 H 0.062 0.938 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.056 3.944 26 S 0.142 5.858 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.377 0.623 41 H 0.268 0.732 42 H 0.062 0.938 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 1.316 -14.335 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.278 4.278 4 C -0.127 4.127 5 C -0.229 4.229 6 C -0.153 4.153 7 N -0.223 5.223 8 C 0.067 3.933 9 C -0.138 4.138 10 N -0.224 5.224 11 C 0.177 3.823 12 N -0.200 5.200 13 C -0.084 4.084 14 C -0.166 4.166 15 C 0.223 3.777 16 O -0.383 6.383 17 C -0.578 4.578 18 H 0.080 0.920 19 C -0.127 4.127 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.070 4.070 26 S 0.400 5.600 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.550 2.524 -16.292 16.683 hybrid contribution -0.602 -2.208 2.082 3.094 sum -3.153 0.316 -14.210 14.559 Atomic orbital electron populations 1.21796 0.94011 1.02229 1.02600 1.20197 0.96440 0.88872 1.03918 1.24081 1.07183 1.01168 0.95398 1.20947 1.00032 0.91041 1.00634 1.21462 1.08264 0.97953 0.95236 1.23798 0.99834 0.97518 0.94133 1.67813 1.15426 0.99919 1.39171 1.23152 0.90860 0.95397 0.83929 1.20550 1.01966 0.89181 1.02107 1.67905 1.16790 1.21847 1.15814 1.20484 0.85170 0.86268 0.90381 1.61657 1.10059 1.41538 1.06698 1.23144 0.86493 1.00070 0.98717 1.23017 1.01304 0.96485 0.95828 1.19278 0.87010 0.88480 0.82967 1.86191 1.61932 1.66761 1.23447 1.21481 1.33244 0.94722 1.08396 0.92017 1.24952 0.93674 0.98345 0.95730 1.69753 1.31365 1.37457 1.14301 0.86515 0.78316 0.84065 0.78556 1.20299 1.21112 1.19837 1.23587 0.97497 0.88005 0.97871 1.83985 1.68458 1.00899 1.06640 0.91917 0.92555 0.91775 0.90510 0.89005 0.81994 0.89499 0.89681 0.89243 0.94069 0.90864 0.90687 0.91288 0.77429 0.92240 0.91960 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.05 -0.58 6.37 -27.89 -0.18 -0.76 16 3 C -0.16 -2.18 5.64 -36.21 -0.20 -2.38 16 4 C -0.10 -1.54 7.22 -38.78 -0.28 -1.82 16 5 C -0.21 -3.73 5.07 -105.24 -0.53 -4.27 16 6 C 0.10 1.65 7.69 -16.08 -0.12 1.52 16 7 N -0.51 -8.43 10.36 -9.47 -0.10 -8.53 16 8 C 0.34 5.48 7.64 -157.38 -1.20 4.28 16 9 C -0.08 -0.89 10.31 36.01 0.37 -0.52 16 10 N -0.51 -9.50 10.32 -9.60 -0.10 -9.60 16 11 C 0.43 8.21 5.90 -154.58 -0.91 7.30 16 12 N -0.48 -9.78 5.35 -168.53 -0.90 -10.68 16 13 C 0.04 0.81 5.94 -2.76 -0.02 0.79 16 14 C -0.13 -2.73 5.22 -25.38 -0.13 -2.86 16 15 C 0.26 6.19 0.94 -89.91 -0.08 6.11 16 16 O -0.58 -14.62 13.10 -35.23 -0.46 -15.08 16 17 C -0.54 -13.55 8.13 -34.45 -0.28 -13.83 16 18 H 0.06 1.54 7.78 -52.49 -0.41 1.13 16 19 C 0.08 1.90 5.31 -17.82 -0.09 1.81 16 20 N -0.89 -22.46 11.11 55.43 0.62 -21.85 16 21 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.06 1.20 5.25 -1.89 -0.01 1.19 16 26 S 0.14 1.88 23.20 -107.50 -2.49 -0.62 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.16 2.73 6.22 -52.49 -0.33 2.40 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.74 5.72 -51.93 -0.30 0.44 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.68 7.87 -51.93 -0.41 1.28 16 39 H 0.07 1.49 7.84 -51.93 -0.41 1.09 16 40 H 0.38 9.47 7.56 45.56 0.34 9.81 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.06 1.28 4.87 -51.93 -0.25 1.02 16 43 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -28.18 358.38 -11.49 -39.67 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.12 Total: 11.17 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.31 Total: -4.49 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.48 Total: -50.66 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.46 Total: -15.08 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.18 -11.49 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603398722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.609 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds