Wall clock time and date at job start Tue Mar 31 2020 17:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47166 * 2 1 4 4 C 1.31882 * 124.30668 * 89.99757 * 3 2 1 5 5 C 1.45078 * 114.81701 * 180.02562 * 4 3 2 6 6 C 1.39759 * 111.99456 * 0.21005 * 5 4 3 7 7 N 1.33900 * 119.10793 * 180.28930 * 6 5 4 8 8 C 1.31282 * 121.03437 * 359.74184 * 7 6 5 9 9 C 1.50710 * 118.90543 * 179.97438 * 8 7 6 10 10 N 1.32082 * 122.18703 * 0.02562 * 8 7 6 11 11 C 1.32471 * 121.18882 * 359.97438 * 10 8 7 12 12 N 1.38320 * 120.53425 * 179.97438 * 11 10 8 13 13 C 1.47902 * 111.00442 * 120.12068 * 12 11 10 14 14 C 1.53990 * 107.05921 * 145.84489 * 13 12 11 15 15 C 1.54595 * 105.14359 * 358.77715 * 14 13 12 16 16 O 1.42902 * 110.72322 * 96.39594 * 15 14 13 17 17 C 1.50690 * 110.72876 * 219.68475 * 15 14 13 18 18 H 1.08001 * 120.00415 * 117.54322 * 17 15 14 19 19 C 1.37877 * 119.99838 * 297.54371 * 17 15 14 20 20 N 1.31512 * 120.00423 * 3.58645 * 19 17 15 21 21 Si 1.86804 * 119.99935 * 183.58780 * 19 17 15 22 22 H 1.48502 * 109.47302 * 85.00681 * 21 19 17 23 23 H 1.48499 * 109.47211 * 205.00518 * 21 19 17 24 24 H 1.48494 * 109.47260 * 325.00698 * 21 19 17 25 25 C 1.48538 * 111.00247 * 237.52131 * 12 11 10 26 26 S 1.75361 * 124.30294 * 270.49019 * 3 2 1 27 27 H 1.08999 * 109.47042 * 300.00294 * 1 2 3 28 28 H 1.09004 * 109.47104 * 60.00180 * 1 2 3 29 29 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47042 * 239.99706 * 2 1 3 31 31 H 1.09004 * 109.47104 * 119.99820 * 2 1 3 32 32 H 1.08002 * 122.59076 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46943 * 270.02230 * 9 8 7 34 34 H 1.08997 * 109.46695 * 30.02385 * 9 8 7 35 35 H 1.09001 * 109.46586 * 150.02289 * 9 8 7 36 36 H 1.09005 * 109.91517 * 26.49794 * 13 12 11 37 37 H 1.09002 * 110.08488 * 265.29356 * 13 12 11 38 38 H 1.09000 * 110.31279 * 117.69558 * 14 13 12 39 39 H 1.08999 * 110.31310 * 239.86289 * 14 13 12 40 40 H 0.96699 * 113.99682 * 54.66732 * 16 15 14 41 41 H 0.96994 * 120.00352 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.66605 * 318.70957 * 25 12 11 43 43 H 1.08999 * 110.66800 * 81.84038 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2801 2.1216 1.0894 5 6 2.7565 3.4709 0.8502 6 6 2.8525 3.7579 -0.5142 7 7 3.2847 4.9661 -0.8969 8 6 3.6121 5.8792 -0.0123 9 6 4.0934 7.2229 -0.4963 10 7 3.5347 5.6591 1.2878 11 6 3.1183 4.4947 1.7628 12 7 3.0429 4.2787 3.1270 13 6 1.6591 3.9555 3.5369 14 6 1.7555 2.9516 4.7006 15 6 3.2691 2.7068 4.8985 16 8 3.7842 3.5396 5.9392 17 6 3.5405 1.2540 5.1924 18 1 4.1430 0.6689 4.5134 19 6 3.0195 0.6715 6.3284 20 7 2.2282 1.3636 7.1186 21 14 3.4378 -1.1008 6.7451 22 1 4.7246 -1.1449 7.4850 23 1 2.3613 -1.6780 7.5896 24 1 3.5599 -1.8883 5.4921 25 6 3.8674 3.1097 3.5272 26 16 2.3501 2.3567 -1.4486 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1391 1.7219 2.0828 33 1 5.1768 7.2001 -0.6136 34 1 3.6287 7.4512 -1.4554 35 1 3.8226 7.9890 0.2303 36 1 1.1201 3.5062 2.7028 37 1 1.1459 4.8587 3.8672 38 1 1.3198 3.3772 5.6046 39 1 1.2527 2.0204 4.4397 40 1 3.3146 3.4541 6.7801 41 1 1.8614 0.9537 7.9175 42 1 3.7597 2.2985 2.8072 43 1 4.9140 3.3952 3.6330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603398722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:35 Heat of formation + Delta-G solvation = 8.216043 kcal Electronic energy + Delta-G solvation = -27132.766657 eV Core-core repulsion = 23496.733547 eV Total energy + Delta-G solvation = -3636.033110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -42.59697 -40.22035 -38.10716 -36.95256 -34.82422 -34.19412 -34.07361 -31.93133 -30.81706 -30.03980 -28.30192 -26.85402 -25.63023 -24.86539 -23.54833 -22.30379 -21.69521 -21.29027 -19.33501 -19.15149 -18.33554 -17.48077 -17.10954 -16.84245 -16.65006 -16.08490 -15.73884 -15.37536 -15.26907 -14.99977 -14.73273 -14.48527 -14.37764 -14.05990 -13.95671 -13.67294 -13.43580 -13.27175 -13.22967 -12.94906 -12.63518 -12.61159 -12.46510 -12.44568 -12.40102 -12.22787 -12.06061 -11.98456 -11.74193 -11.57854 -11.19513 -10.69744 -10.59884 -10.14575 -9.91553 -9.62353 -9.23213 -8.20739 -6.35970 -0.82129 -0.37100 -0.05104 0.64482 0.95414 1.42922 1.46852 1.53622 2.18178 2.37093 2.42450 2.94395 3.04421 3.11723 3.41152 3.60074 3.75329 3.86477 3.94814 4.09259 4.15684 4.24039 4.25720 4.36160 4.51538 4.57791 4.63499 4.68255 4.72150 4.75809 4.80076 4.91386 4.96097 5.04412 5.05088 5.18844 5.20707 5.31170 5.34569 5.48944 5.53797 5.61306 5.77764 6.03246 6.17564 6.68153 6.93025 7.35502 7.44216 8.85344 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.004798 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.493809 B = 5834.008493 C = 7607.496180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.125 4.125 5 C -0.220 4.220 6 C 0.072 3.928 7 N -0.507 5.507 8 C 0.327 3.673 9 C -0.076 4.076 10 N -0.529 5.529 11 C 0.400 3.600 12 N -0.487 5.487 13 C 0.052 3.948 14 C -0.112 4.112 15 C 0.251 3.749 16 O -0.589 6.589 17 C -0.559 4.559 18 H 0.057 0.943 19 C 0.040 3.960 20 N -0.906 5.906 21 Si 0.955 3.045 22 H -0.282 1.282 23 H -0.281 1.281 24 H -0.266 1.266 25 C 0.067 3.933 26 S 0.206 5.794 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.373 0.627 41 H 0.269 0.731 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 0.190 -16.635 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.261 4.261 4 C -0.155 4.155 5 C -0.237 4.237 6 C -0.179 4.179 7 N -0.225 5.225 8 C 0.056 3.944 9 C -0.134 4.134 10 N -0.246 5.246 11 C 0.152 3.848 12 N -0.210 5.210 13 C -0.074 4.074 14 C -0.151 4.151 15 C 0.211 3.789 16 O -0.397 6.397 17 C -0.597 4.597 18 H 0.075 0.925 19 C -0.162 4.162 20 N -0.544 5.544 21 Si 0.780 3.220 22 H -0.208 1.208 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.059 4.059 26 S 0.465 5.535 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.222 0.778 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.072 1.411 -18.613 18.917 hybrid contribution -0.446 -1.883 2.697 3.319 sum -3.517 -0.472 -15.916 16.306 Atomic orbital electron populations 1.21795 0.92968 1.03442 1.02251 1.20387 0.97218 0.87026 1.05072 1.24550 1.04266 1.02125 0.95129 1.20777 1.02866 0.90973 1.00835 1.21470 1.08507 0.98238 0.95512 1.24354 1.00139 0.98646 0.94793 1.67952 1.15409 1.00033 1.39087 1.24033 0.90297 0.96940 0.83151 1.20727 1.02929 0.86683 1.03038 1.67900 1.17324 1.21994 1.17341 1.20456 0.87005 0.87410 0.89931 1.61513 1.10178 1.40913 1.08389 1.23023 0.86500 0.99668 0.98243 1.22748 0.99658 0.96643 0.96005 1.19461 0.88404 0.87880 0.83177 1.86182 1.62436 1.67300 1.23769 1.21682 1.33612 0.95563 1.08880 0.92502 1.25573 0.93482 1.01629 0.95540 1.69833 1.31587 1.38614 1.14391 0.85627 0.77717 0.80214 0.78402 1.20800 1.20618 1.19048 1.23364 0.96521 0.88863 0.97142 1.83770 1.66724 0.98201 1.04778 0.93364 0.91823 0.89850 0.88020 0.89198 0.83499 0.87919 0.87698 0.88528 0.92720 0.90375 0.92181 0.91891 0.77801 0.92137 0.91126 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.06 -1.07 6.37 29.85 0.19 -0.88 16 3 C -0.14 -3.59 5.64 24.86 0.14 -3.45 16 4 C -0.13 -3.92 7.22 23.20 0.17 -3.75 16 5 C -0.22 -7.72 5.07 -20.26 -0.10 -7.82 16 6 C 0.07 2.32 7.69 84.75 0.65 2.97 16 7 N -0.51 -16.29 10.36 -183.86 -1.90 -18.19 16 8 C 0.33 10.33 7.64 138.82 1.06 11.39 16 9 C -0.08 -1.56 10.31 71.24 0.73 -0.82 16 10 N -0.53 -19.92 10.32 -184.27 -1.90 -21.83 16 11 C 0.40 15.66 5.90 133.95 0.79 16.45 16 12 N -0.49 -20.51 5.35 -687.12 -3.67 -24.19 16 13 C 0.05 2.03 5.94 86.44 0.51 2.55 16 14 C -0.11 -4.91 5.22 31.47 0.16 -4.75 16 15 C 0.25 12.16 0.94 -10.34 -0.01 12.15 16 16 O -0.59 -30.97 13.10 -148.98 -1.95 -32.92 16 17 C -0.56 -28.56 8.13 25.60 0.21 -28.35 16 18 H 0.06 2.88 7.78 -2.91 -0.02 2.86 16 19 C 0.04 1.98 5.31 84.65 0.45 2.43 16 20 N -0.91 -46.21 11.11 21.45 0.24 -45.97 16 21 Si 0.95 40.13 29.54 68.60 2.03 42.15 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 C 0.07 2.99 5.25 86.65 0.45 3.44 16 26 S 0.21 4.92 23.20 -56.49 -1.31 3.61 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.15 5.04 6.22 -2.91 -0.02 5.02 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.99 5.72 -2.38 -0.01 1.97 16 37 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.06 2.78 7.87 -2.39 -0.02 2.77 16 39 H 0.06 2.80 7.84 -2.39 -0.02 2.78 16 40 H 0.37 19.50 7.56 -74.06 -0.56 18.94 16 41 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 42 H 0.07 2.99 4.87 -2.39 -0.01 2.98 16 43 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -60.96 358.38 -1.86 -62.81 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.49 Total: 34.68 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.13 Total: -0.17 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -7.24 Total: -110.17 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.95 Total: -32.92 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.31 Total: 3.61 kcal Total: -60.96 -1.86 -62.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603398722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.029 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.67 seconds