Wall clock time and date at job start Tue Mar 31 2020 17:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47018 * 2 1 4 4 C 1.31890 * 124.30340 * 90.00312 * 3 2 1 5 5 C 1.45080 * 114.81180 * 180.02562 * 4 3 2 6 6 C 1.39758 * 111.99619 * 0.20568 * 5 4 3 7 7 N 1.33898 * 119.10535 * 180.28869 * 6 5 4 8 8 C 1.31286 * 121.03892 * 359.74335 * 7 6 5 9 9 C 1.50703 * 118.90879 * 179.97438 * 8 7 6 10 10 N 1.32080 * 122.18326 * 0.02562 * 8 7 6 11 11 C 1.32479 * 121.18763 * 359.97016 * 10 8 7 12 12 N 1.38328 * 120.53199 * 179.97438 * 11 10 8 13 13 C 1.48720 * 111.01851 * 244.49509 * 12 11 10 14 14 C 1.54381 * 104.51692 * 158.96382 * 13 12 11 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 O 1.42910 * 110.32027 * 241.04997 * 15 14 13 17 17 C 1.50695 * 110.32879 * 118.94622 * 15 14 13 18 18 H 1.07997 * 120.00075 * 241.45186 * 17 15 14 19 19 C 1.37884 * 119.99868 * 61.44756 * 17 15 14 20 20 N 1.31515 * 119.99923 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99830 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46710 * 120.00229 * 21 19 17 24 24 H 1.48497 * 109.46876 * 239.99840 * 21 19 17 25 25 C 1.48567 * 110.99792 * 0.02562 * 12 11 10 26 26 S 1.75356 * 124.30348 * 270.48985 * 3 2 1 27 27 H 1.09005 * 109.46893 * 300.00365 * 1 2 3 28 28 H 1.09001 * 109.47475 * 59.99621 * 1 2 3 29 29 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47142 * 240.00292 * 2 1 3 31 31 H 1.09003 * 109.47401 * 119.99843 * 2 1 3 32 32 H 1.07996 * 122.59216 * 0.05477 * 4 3 2 33 33 H 1.08995 * 109.47206 * 270.02436 * 9 8 7 34 34 H 1.09000 * 109.46906 * 30.02254 * 9 8 7 35 35 H 1.08996 * 109.46677 * 150.02018 * 9 8 7 36 36 H 1.09004 * 110.38960 * 40.24349 * 13 12 11 37 37 H 1.08996 * 110.50963 * 277.74792 * 13 12 11 38 38 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 39 39 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 40 40 H 0.96699 * 114.00154 * 298.54485 * 16 15 14 41 41 H 0.97005 * 119.99855 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.41133 * 82.17490 * 25 12 11 43 43 H 1.09001 * 110.41003 * 319.73886 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1216 1.0895 5 6 2.7565 3.4709 0.8503 6 6 2.8525 3.7580 -0.5142 7 7 3.2846 4.9662 -0.8967 8 6 3.6120 5.8794 -0.0122 9 6 4.0932 7.2230 -0.4961 10 7 3.5347 5.6592 1.2879 11 6 3.1182 4.4948 1.7629 12 7 3.0429 4.2787 3.1271 13 6 3.9944 3.2178 3.5524 14 6 4.1964 3.4623 5.0633 15 6 3.8546 4.9508 5.2801 16 8 4.9918 5.6524 5.7869 17 6 2.6910 5.0880 6.2278 18 1 1.7758 5.5551 5.8952 19 6 2.7948 4.6173 7.5196 20 7 3.9094 4.0489 7.9248 21 14 1.3521 4.7868 8.6942 22 1 0.2238 5.4565 7.9988 23 1 0.9233 3.4398 9.1490 24 1 1.7624 5.5983 9.8682 25 6 3.4751 5.4834 3.8815 26 16 2.3500 2.3567 -1.4485 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1397 1.7218 2.0828 33 1 5.1766 7.2003 -0.6136 34 1 3.6285 7.4514 -1.4553 35 1 3.8224 7.9891 0.2304 36 1 4.9405 3.3208 3.0209 37 1 3.5667 2.2301 3.3810 38 1 5.2316 3.2668 5.3434 39 1 3.5226 2.8309 5.6424 40 1 5.3029 5.3304 6.6439 41 1 3.9825 3.7181 8.8338 42 1 2.6564 6.1991 3.9562 43 1 4.3398 5.9422 3.4021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603398723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:49 Heat of formation + Delta-G solvation = 21.177043 kcal Electronic energy + Delta-G solvation = -26620.426375 eV Core-core repulsion = 22984.955296 eV Total energy + Delta-G solvation = -3635.471079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14688 -38.54851 -37.02071 -35.36531 -33.76104 -32.67093 -32.16621 -30.80096 -29.15249 -28.35569 -27.21732 -25.27854 -24.14514 -23.60257 -22.18215 -21.02846 -20.34069 -19.60129 -17.87291 -17.29155 -17.10791 -16.16398 -15.61510 -15.49210 -14.91464 -14.56764 -14.49019 -14.03194 -13.96610 -13.80702 -13.46684 -13.36844 -12.96747 -12.64195 -12.48950 -12.35384 -12.28607 -11.80545 -11.71564 -11.49732 -11.45334 -11.32707 -11.23157 -10.96644 -10.83916 -10.79258 -10.59619 -10.53679 -10.40354 -10.05177 -9.22281 -9.05387 -9.01137 -8.63959 -8.44638 -8.23465 -7.85233 -6.24296 -4.30418 0.50422 1.08356 1.11830 1.80950 2.17748 3.20612 3.29716 3.35125 3.61278 3.85143 4.09862 4.29961 4.37781 4.55621 4.82633 4.88910 4.95844 5.05752 5.08436 5.30722 5.42584 5.53206 5.55670 5.57224 5.59927 5.65005 5.70471 5.81161 5.82406 5.94876 5.99575 6.01419 6.14883 6.22027 6.27377 6.56346 6.64156 6.71444 6.92477 7.11781 7.28622 7.43747 7.48494 7.76892 8.11209 8.25150 8.72873 9.34435 9.44040 10.83177 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003943 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.373844 B = 7100.284325 C = 8623.289765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C -0.180 4.180 4 C -0.079 4.079 5 C -0.196 4.196 6 C 0.107 3.893 7 N -0.523 5.523 8 C 0.357 3.643 9 C -0.081 4.081 10 N -0.556 5.556 11 C 0.416 3.584 12 N -0.441 5.441 13 C 0.048 3.952 14 C -0.123 4.123 15 C 0.248 3.752 16 O -0.590 6.590 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.068 3.932 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.064 3.936 26 S 0.143 5.857 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -6.115 -15.768 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.296 4.296 4 C -0.108 4.108 5 C -0.212 4.212 6 C -0.143 4.143 7 N -0.243 5.243 8 C 0.084 3.916 9 C -0.140 4.140 10 N -0.279 5.279 11 C 0.167 3.833 12 N -0.158 5.158 13 C -0.077 4.077 14 C -0.161 4.161 15 C 0.208 3.792 16 O -0.399 6.399 17 C -0.560 4.560 18 H 0.082 0.918 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.062 4.062 26 S 0.401 5.599 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.234 0.766 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.107 -5.504 -17.855 18.802 hybrid contribution -0.309 -0.542 2.852 2.919 sum -2.416 -6.046 -15.003 16.355 Atomic orbital electron populations 1.21809 0.94156 1.02040 1.02751 1.20125 0.96322 0.89049 1.03485 1.23954 1.08821 1.01177 0.95633 1.20642 0.99348 0.91009 0.99844 1.20128 1.10531 0.96906 0.93619 1.23663 0.99295 0.97477 0.93911 1.67838 1.17634 0.99994 1.38845 1.23020 0.89480 0.95040 0.84028 1.20557 1.01911 0.89402 1.02125 1.68278 1.20016 1.22967 1.16594 1.20420 0.84692 0.86937 0.91222 1.61982 1.44697 1.10442 0.98685 1.23342 0.91895 0.93363 0.99108 1.22974 1.01373 1.01662 0.90126 1.19284 0.85049 0.85951 0.88934 1.86106 1.49002 1.63422 1.41348 1.21673 0.99536 1.38691 0.96122 0.91836 1.24997 0.96244 0.93985 0.98139 1.69692 1.25831 1.40050 1.18377 0.86409 0.82432 0.77815 0.80609 1.19660 1.20930 1.20875 1.23009 1.00208 0.89645 0.93378 1.83960 1.68534 1.00870 1.06545 0.91980 0.92436 0.91950 0.90633 0.89585 0.83009 0.89577 0.89722 0.89281 0.93812 0.90262 0.92015 0.89900 0.76572 0.92382 0.89765 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.05 -0.44 6.37 -27.88 -0.18 -0.62 16 3 C -0.18 -2.14 5.64 -36.21 -0.20 -2.35 16 4 C -0.08 -1.11 9.37 -38.78 -0.36 -1.48 16 5 C -0.20 -3.32 5.81 -105.24 -0.61 -3.93 16 6 C 0.11 1.75 7.69 -16.08 -0.12 1.62 16 7 N -0.52 -8.75 10.36 -9.47 -0.10 -8.85 16 8 C 0.36 5.86 7.64 -157.38 -1.20 4.66 16 9 C -0.08 -0.96 10.31 36.01 0.37 -0.59 16 10 N -0.56 -10.38 8.42 -9.60 -0.08 -10.46 16 11 C 0.42 7.89 6.22 -154.56 -0.96 6.93 16 12 N -0.44 -8.85 5.35 -167.93 -0.90 -9.75 16 13 C 0.05 0.89 5.86 -2.09 -0.01 0.88 16 14 C -0.12 -2.69 5.55 -25.35 -0.14 -2.83 16 15 C 0.25 6.01 1.05 -90.39 -0.10 5.91 16 16 O -0.59 -14.98 12.94 -35.23 -0.46 -15.44 16 17 C -0.52 -13.72 8.10 -34.44 -0.28 -14.00 16 18 H 0.06 1.71 7.54 -52.49 -0.40 1.31 16 19 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 20 N -0.90 -23.23 10.81 55.43 0.60 -22.63 16 21 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.06 1.41 5.22 -2.17 -0.01 1.40 16 26 S 0.14 1.79 23.20 -107.50 -2.49 -0.70 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.15 2.05 6.82 -52.49 -0.36 1.69 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.80 7.97 -51.93 -0.41 0.39 16 37 H 0.08 1.30 6.42 -51.93 -0.33 0.96 16 38 H 0.06 1.35 7.98 -51.93 -0.41 0.94 16 39 H 0.08 1.95 7.24 -51.93 -0.38 1.58 16 40 H 0.38 9.78 7.32 45.56 0.33 10.11 16 41 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 42 H 0.08 1.94 7.68 -51.93 -0.40 1.54 16 43 H 0.07 1.47 7.11 -51.93 -0.37 1.10 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -28.66 361.18 -11.78 -40.44 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.24 Total: 10.11 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.53 Total: -3.58 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.48 Total: -51.70 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.46 Total: -15.44 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.66 -11.78 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603398723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.617 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds