Wall clock time and date at job start Tue Mar 31 2020 17:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47018 * 2 1 4 4 C 1.31890 * 124.30340 * 90.00312 * 3 2 1 5 5 C 1.45080 * 114.81180 * 180.02562 * 4 3 2 6 6 C 1.39758 * 111.99619 * 0.20568 * 5 4 3 7 7 N 1.33898 * 119.10535 * 180.28869 * 6 5 4 8 8 C 1.31286 * 121.03892 * 359.74335 * 7 6 5 9 9 C 1.50703 * 118.90879 * 179.97438 * 8 7 6 10 10 N 1.32080 * 122.18326 * 0.02562 * 8 7 6 11 11 C 1.32479 * 121.18763 * 359.97016 * 10 8 7 12 12 N 1.38328 * 120.53199 * 179.97438 * 11 10 8 13 13 C 1.48720 * 111.01851 * 244.49509 * 12 11 10 14 14 C 1.54381 * 104.51692 * 158.96382 * 13 12 11 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 O 1.42910 * 110.32027 * 241.04997 * 15 14 13 17 17 C 1.50695 * 110.32879 * 118.94622 * 15 14 13 18 18 H 1.07997 * 120.00075 * 241.45186 * 17 15 14 19 19 C 1.37884 * 119.99868 * 61.44756 * 17 15 14 20 20 N 1.31515 * 119.99923 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99830 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46710 * 120.00229 * 21 19 17 24 24 H 1.48497 * 109.46876 * 239.99840 * 21 19 17 25 25 C 1.48567 * 110.99792 * 0.02562 * 12 11 10 26 26 S 1.75356 * 124.30348 * 270.48985 * 3 2 1 27 27 H 1.09005 * 109.46893 * 300.00365 * 1 2 3 28 28 H 1.09001 * 109.47475 * 59.99621 * 1 2 3 29 29 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47142 * 240.00292 * 2 1 3 31 31 H 1.09003 * 109.47401 * 119.99843 * 2 1 3 32 32 H 1.07996 * 122.59216 * 0.05477 * 4 3 2 33 33 H 1.08995 * 109.47206 * 270.02436 * 9 8 7 34 34 H 1.09000 * 109.46906 * 30.02254 * 9 8 7 35 35 H 1.08996 * 109.46677 * 150.02018 * 9 8 7 36 36 H 1.09004 * 110.38960 * 40.24349 * 13 12 11 37 37 H 1.08996 * 110.50963 * 277.74792 * 13 12 11 38 38 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 39 39 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 40 40 H 0.96699 * 114.00154 * 298.54485 * 16 15 14 41 41 H 0.97005 * 119.99855 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.41133 * 82.17490 * 25 12 11 43 43 H 1.09001 * 110.41003 * 319.73886 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1216 1.0895 5 6 2.7565 3.4709 0.8503 6 6 2.8525 3.7580 -0.5142 7 7 3.2846 4.9662 -0.8967 8 6 3.6120 5.8794 -0.0122 9 6 4.0932 7.2230 -0.4961 10 7 3.5347 5.6592 1.2879 11 6 3.1182 4.4948 1.7629 12 7 3.0429 4.2787 3.1271 13 6 3.9944 3.2178 3.5524 14 6 4.1964 3.4623 5.0633 15 6 3.8546 4.9508 5.2801 16 8 4.9918 5.6524 5.7869 17 6 2.6910 5.0880 6.2278 18 1 1.7758 5.5551 5.8952 19 6 2.7948 4.6173 7.5196 20 7 3.9094 4.0489 7.9248 21 14 1.3521 4.7868 8.6942 22 1 0.2238 5.4565 7.9988 23 1 0.9233 3.4398 9.1490 24 1 1.7624 5.5983 9.8682 25 6 3.4751 5.4834 3.8815 26 16 2.3500 2.3567 -1.4485 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1397 1.7218 2.0828 33 1 5.1766 7.2003 -0.6136 34 1 3.6285 7.4514 -1.4553 35 1 3.8224 7.9891 0.2304 36 1 4.9405 3.3208 3.0209 37 1 3.5667 2.2301 3.3810 38 1 5.2316 3.2668 5.3434 39 1 3.5226 2.8309 5.6424 40 1 5.3029 5.3304 6.6439 41 1 3.9825 3.7181 8.8338 42 1 2.6564 6.1991 3.9562 43 1 4.3398 5.9422 3.4021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603398723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:46 Heat of formation + Delta-G solvation = 3.556656 kcal Electronic energy + Delta-G solvation = -26621.190452 eV Core-core repulsion = 22984.955296 eV Total energy + Delta-G solvation = -3636.235156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45122 -40.16460 -38.06063 -37.12414 -34.73874 -34.21701 -34.06818 -31.84355 -30.69666 -30.05634 -28.34898 -27.00104 -25.32743 -24.85545 -23.42071 -22.40064 -21.52381 -21.35308 -19.14118 -19.02680 -18.66281 -17.30893 -16.95738 -16.88767 -16.78614 -16.10976 -15.75345 -15.35685 -15.25595 -14.89726 -14.72112 -14.44876 -14.19599 -14.16833 -14.01434 -13.51479 -13.46747 -13.27442 -13.20346 -13.08346 -12.66217 -12.53595 -12.46435 -12.39856 -12.36656 -12.24112 -12.11656 -11.93190 -11.81550 -11.66119 -11.05478 -10.63414 -10.40187 -10.33498 -10.19644 -9.65396 -9.04250 -8.22131 -6.35193 -0.68058 -0.24459 0.02469 0.74859 1.07961 1.39306 1.43563 1.53857 2.24683 2.39755 2.53610 2.90697 3.04969 3.24679 3.35048 3.64000 3.76373 3.86067 4.04643 4.13698 4.19685 4.23500 4.33681 4.42150 4.49979 4.56639 4.66945 4.72397 4.74325 4.82056 4.87366 4.90311 4.98699 5.05226 5.08189 5.14257 5.24343 5.27067 5.39857 5.44609 5.57279 5.73680 5.86706 5.91241 6.15333 6.68475 6.96793 7.32969 7.41935 8.84105 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003943 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.373844 B = 7100.284325 C = 8623.289765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.202 4.202 6 C 0.076 3.924 7 N -0.525 5.525 8 C 0.339 3.661 9 C -0.077 4.077 10 N -0.578 5.578 11 C 0.391 3.609 12 N -0.446 5.446 13 C 0.058 3.942 14 C -0.111 4.111 15 C 0.234 3.766 16 O -0.599 6.599 17 C -0.546 4.546 18 H 0.047 0.953 19 C 0.034 3.966 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.275 1.275 24 H -0.279 1.279 25 C 0.078 3.922 26 S 0.195 5.805 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.270 0.730 42 H 0.066 0.934 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -8.016 -17.387 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.273 4.273 4 C -0.135 4.135 5 C -0.218 4.218 6 C -0.174 4.174 7 N -0.245 5.245 8 C 0.068 3.932 9 C -0.135 4.135 10 N -0.301 5.301 11 C 0.143 3.857 12 N -0.163 5.163 13 C -0.066 4.066 14 C -0.150 4.150 15 C 0.195 3.805 16 O -0.407 6.407 17 C -0.584 4.584 18 H 0.066 0.934 19 C -0.166 4.166 20 N -0.550 5.550 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.201 1.201 24 H -0.205 1.205 25 C -0.049 4.049 26 S 0.454 5.546 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.846 -7.406 -19.506 21.058 hybrid contribution -0.099 -0.021 3.227 3.228 sum -2.944 -7.427 -16.279 18.134 Atomic orbital electron populations 1.21813 0.93533 1.03254 1.02097 1.20340 0.96686 0.86889 1.05237 1.24476 1.05727 1.02243 0.94822 1.20653 1.01665 0.90299 1.00885 1.20324 1.10277 0.97609 0.93570 1.24280 0.99823 0.98496 0.94835 1.67946 1.17470 1.00312 1.38816 1.23783 0.89487 0.96569 0.83398 1.20689 1.02856 0.87138 1.02848 1.68253 1.20613 1.23213 1.17996 1.20505 0.86269 0.88123 0.90779 1.62015 1.45333 1.09381 0.99619 1.23262 0.92303 0.94457 0.96612 1.22708 1.00406 0.99621 0.92238 1.19477 0.84209 0.87422 0.89431 1.86098 1.49493 1.64026 1.41127 1.21792 0.99713 1.39574 0.97301 0.93421 1.25576 0.98384 0.93560 0.99127 1.69751 1.26710 1.39777 1.18755 0.85542 0.79647 0.77939 0.78666 1.20212 1.20068 1.20478 1.22679 0.99062 0.90396 0.92722 1.83808 1.66898 0.98362 1.05550 0.93252 0.92516 0.89876 0.88467 0.88261 0.82639 0.88063 0.87873 0.89085 0.93549 0.87562 0.92476 0.91727 0.77008 0.92034 0.91543 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.05 -0.72 6.37 29.85 0.19 -0.53 16 3 C -0.16 -3.31 5.64 24.85 0.14 -3.17 16 4 C -0.11 -2.84 9.37 23.19 0.22 -2.62 16 5 C -0.20 -6.74 5.81 -20.27 -0.12 -6.86 16 6 C 0.08 2.39 7.69 84.75 0.65 3.05 16 7 N -0.53 -17.21 10.36 -183.87 -1.90 -19.12 16 8 C 0.34 11.13 7.64 138.82 1.06 12.19 16 9 C -0.08 -1.76 10.31 71.24 0.73 -1.03 16 10 N -0.58 -22.05 8.42 -184.27 -1.55 -23.60 16 11 C 0.39 15.07 6.22 133.94 0.83 15.90 16 12 N -0.45 -18.30 5.35 -685.22 -3.67 -21.97 16 13 C 0.06 2.19 5.86 86.42 0.51 2.70 16 14 C -0.11 -4.96 5.55 31.49 0.17 -4.78 16 15 C 0.23 11.72 1.05 -10.64 -0.01 11.71 16 16 O -0.60 -31.40 12.94 -148.98 -1.93 -33.33 16 17 C -0.55 -29.48 8.10 25.60 0.21 -29.28 16 18 H 0.05 2.66 7.54 -2.91 -0.02 2.64 16 19 C 0.03 1.77 5.02 84.66 0.43 2.20 16 20 N -0.91 -47.35 10.81 21.45 0.23 -47.12 16 21 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.08 3.62 5.22 86.45 0.45 4.07 16 26 S 0.20 4.39 23.20 -56.49 -1.31 3.08 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.77 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.16 3.99 6.82 -2.91 -0.02 3.97 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.71 7.97 -2.38 -0.02 1.69 16 37 H 0.11 3.39 6.42 -2.39 -0.02 3.38 16 38 H 0.06 2.55 7.98 -2.39 -0.02 2.53 16 39 H 0.06 3.10 7.24 -2.39 -0.02 3.08 16 40 H 0.38 19.97 7.32 -74.06 -0.54 19.42 16 41 H 0.27 13.34 8.31 -92.70 -0.77 12.57 16 42 H 0.07 3.23 7.68 -2.39 -0.02 3.21 16 43 H 0.06 2.69 7.11 -2.39 -0.02 2.67 16 Total: -1.00 -62.73 361.18 -1.43 -64.16 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.50 Total: 31.43 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.17 Total: 2.30 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.89 Total: -111.80 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.93 Total: -33.33 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.31 Total: 3.08 kcal Total: -62.73 -1.43 -64.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603398723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.717 kcal (2) G-P(sol) polarization free energy of solvation -62.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds