Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47329 * 2 1 4 4 C 1.46499 * 120.00354 * 270.00571 * 3 2 1 5 5 C 1.50699 * 109.47343 * 270.00165 * 4 3 2 6 6 H 1.08006 * 119.99632 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00273 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47315 * 59.99640 * 9 7 5 11 11 H 1.48496 * 109.47429 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47222 * 299.99688 * 9 7 5 13 13 C 1.34778 * 119.99804 * 90.00211 * 3 2 1 14 14 O 1.21283 * 119.99648 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99892 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46834 * 179.97438 * 15 13 3 17 17 C 1.35891 * 119.70137 * 89.99980 * 16 15 13 18 18 N 1.29817 * 123.36290 * 179.69221 * 17 16 15 19 19 C 1.35694 * 121.62126 * 0.28453 * 18 17 16 20 20 C 1.39646 * 121.61164 * 180.02562 * 19 18 17 21 21 C 1.37630 * 119.72701 * 179.97438 * 20 19 18 22 22 C 1.39088 * 120.79290 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.74177 * 179.97438 * 22 21 20 24 24 C 1.37979 * 120.51066 * 359.97438 * 22 21 20 25 25 C 1.39326 * 119.49895 * 0.02562 * 24 22 21 26 26 C 1.35349 * 119.70235 * 270.25985 * 16 15 13 27 27 O 1.21732 * 121.29383 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46465 * 299.99432 * 1 2 3 30 30 H 1.08996 * 109.47584 * 59.99348 * 1 2 3 31 31 H 1.09009 * 109.46982 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.47584 * 120.00652 * 2 1 3 33 33 H 1.09009 * 109.47002 * 29.99706 * 4 3 2 34 34 H 1.08999 * 109.47466 * 149.99833 * 4 3 2 35 35 H 0.97002 * 120.00444 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47214 * 60.00010 * 15 13 3 37 37 H 1.08996 * 109.47323 * 299.99648 * 15 13 3 38 38 H 1.08002 * 118.32113 * 359.97438 * 17 16 15 39 39 H 1.08004 * 120.13750 * 359.95611 * 20 19 18 40 40 H 1.08005 * 119.60739 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.24636 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2308 -1.0960 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0976 -3.4166 10 1 6.1414 0.6410 -3.5946 11 1 6.1610 2.7976 -4.7026 12 1 6.8408 2.6208 -2.3814 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2032 3.5858 17 6 1.3436 3.0091 4.0981 18 7 1.5450 3.8261 5.0867 19 6 2.7592 3.9363 5.6824 20 6 2.9755 4.8149 6.7461 21 6 4.2229 4.8950 7.3222 22 6 5.2736 4.1110 6.8574 23 9 6.4895 4.2072 7.4382 24 6 5.0835 3.2359 5.8077 25 6 3.8275 3.1412 5.2122 26 6 3.5656 2.2259 4.0915 27 8 4.4424 1.5125 3.6395 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 3.6752 3.5174 -4.4434 36 1 2.6230 0.4186 2.5298 37 1 0.9446 1.0113 2.5303 38 1 0.3559 2.9645 3.6636 39 1 2.1674 5.4291 7.1151 40 1 4.3882 5.5755 8.1445 41 1 5.9022 2.6289 5.4505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = -55.650052 kcal Electronic energy + Delta-G solvation = -28240.681966 eV Core-core repulsion = 24035.666238 eV Total energy + Delta-G solvation = -4205.015728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.08833 -41.78538 -39.40072 -38.31615 -37.46023 -35.50805 -34.27983 -32.85057 -31.78631 -30.26530 -29.87172 -29.04102 -26.75169 -24.88327 -24.36237 -23.16095 -22.59477 -22.33838 -19.47586 -19.10215 -18.79784 -17.56956 -17.06697 -16.71155 -16.46025 -16.12698 -15.89308 -15.48025 -15.30433 -15.11941 -14.67775 -14.58508 -14.21743 -14.11540 -13.60938 -13.57903 -13.36094 -13.28181 -13.10939 -12.81756 -12.24789 -12.07823 -12.06403 -11.86692 -11.70211 -11.27651 -11.00150 -10.84184 -10.60700 -10.40785 -10.27929 -10.18733 -10.16715 -9.72099 -9.54157 -9.11199 -8.47307 -8.13328 -7.84661 -6.09158 -4.13952 0.23878 0.49064 1.98735 2.16755 2.50389 3.08792 3.30854 3.35035 3.39989 3.61032 3.78726 3.80586 3.90036 4.11400 4.37937 4.41818 4.51305 4.65532 4.73088 4.80806 4.93853 5.05083 5.21106 5.25730 5.27887 5.45537 5.50478 5.60168 5.64799 5.74613 5.78196 5.87941 6.08826 6.10941 6.33317 6.35016 6.50372 6.90634 7.31632 7.39780 7.57430 7.67119 7.86647 8.16099 8.20240 8.73903 8.92499 9.51532 10.98959 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003361 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.350974 B = 8329.534144 C = 9642.955631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.491 3.509 14 O -0.529 6.529 15 C 0.071 3.929 16 N -0.526 5.526 17 C 0.397 3.603 18 N -0.529 5.529 19 C 0.150 3.850 20 C -0.084 4.084 21 C -0.108 4.108 22 C 0.074 3.926 23 F -0.136 7.136 24 C -0.073 4.073 25 C -0.167 4.167 26 C 0.553 3.447 27 O -0.496 6.496 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -3.382 19.868 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.275 3.725 14 O -0.406 6.406 15 C -0.055 4.055 16 N -0.247 5.247 17 C 0.110 3.890 18 N -0.249 5.249 19 C 0.041 3.959 20 C -0.103 4.103 21 C -0.128 4.128 22 C 0.055 3.945 23 F -0.114 7.114 24 C -0.094 4.094 25 C -0.173 4.173 26 C 0.346 3.654 27 O -0.369 6.369 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.218 0.782 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.112 -2.572 19.817 21.211 hybrid contribution 1.823 -0.605 -0.800 2.081 sum -5.289 -3.178 19.017 19.993 Atomic orbital electron populations 1.22233 0.96405 1.01736 1.02399 1.21520 0.93690 0.83949 1.03189 1.48255 1.63124 1.13294 1.07443 1.19314 0.96482 0.93574 0.77677 1.21389 0.96860 1.32226 1.06385 0.92451 1.24911 0.97898 0.94785 0.96329 1.69913 1.35778 1.33278 1.14383 0.86561 0.84752 0.78346 0.77831 1.20150 1.21107 1.20152 1.20295 0.79689 0.87359 0.85135 1.90739 1.45223 1.17855 1.86743 1.22034 1.04473 0.93942 0.85010 1.46218 1.11030 1.36718 1.30751 1.24755 0.93831 0.82828 0.87628 1.68681 1.21813 1.21973 1.12428 1.18857 0.88137 0.94286 0.94647 1.20675 0.96941 0.98112 0.94576 1.21237 0.91834 0.98941 1.00753 1.17486 0.81326 1.00004 0.95733 1.91519 1.41441 1.95297 1.83169 1.20930 0.97158 0.97419 0.93849 1.20307 0.95720 1.01855 0.99401 1.18211 0.81487 0.83002 0.82739 1.90905 1.43339 1.41778 1.60856 0.91844 0.93152 0.91755 0.89417 0.91680 0.94679 0.93857 0.92604 0.85744 0.86105 0.78198 0.83232 0.83665 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.24 37.16 0.38 -1.44 16 2 C 0.10 1.40 5.93 -4.04 -0.02 1.38 16 3 N -0.59 -11.46 2.46 -175.05 -0.43 -11.89 16 4 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 5 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.49 9.42 7.74 -10.99 -0.09 9.34 16 14 O -0.53 -12.86 16.01 5.55 0.09 -12.77 16 15 C 0.07 0.93 4.39 -5.19 -0.02 0.91 16 16 N -0.53 -7.35 2.10 -120.14 -0.25 -7.60 16 17 C 0.40 4.54 11.41 -90.16 -1.03 3.51 16 18 N -0.53 -6.60 10.37 -12.00 -0.12 -6.72 16 19 C 0.15 1.96 6.63 -84.50 -0.56 1.40 16 20 C -0.08 -0.85 10.03 -39.28 -0.39 -1.24 16 21 C -0.11 -1.02 9.98 -39.49 -0.39 -1.41 16 22 C 0.07 0.87 7.29 -39.36 -0.29 0.58 16 23 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 24 C -0.07 -0.99 9.65 -39.27 -0.38 -1.37 16 25 C -0.17 -2.45 5.89 -104.78 -0.62 -3.07 16 26 C 0.55 9.22 7.66 -12.43 -0.10 9.12 16 27 O -0.50 -9.72 16.32 5.16 0.08 -9.63 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.45 7.22 -51.92 -0.38 0.08 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.32 8.07 -51.92 -0.42 0.90 16 32 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 33 H 0.04 0.88 8.07 -51.92 -0.42 0.46 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 1.58 6.73 -51.93 -0.35 1.23 16 37 H 0.12 0.95 7.04 -51.93 -0.37 0.58 16 38 H 0.20 1.40 7.99 -52.49 -0.42 0.98 16 39 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.15 2.02 7.83 -52.49 -0.41 1.61 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -36.94 360.82 -8.11 -45.05 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.71 Total: -2.12 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -3.95 Total: 10.35 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.07 Total: -51.86 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.17 Total: -22.41 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.94 -8.11 -45.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds