Wall clock time and date at job start Tue Mar 31 2020 18:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47329 * 2 1 4 4 C 1.46499 * 120.00354 * 270.00571 * 3 2 1 5 5 C 1.50699 * 109.47343 * 270.00165 * 4 3 2 6 6 H 1.08006 * 119.99632 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00273 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47315 * 59.99640 * 9 7 5 11 11 H 1.48496 * 109.47429 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47222 * 299.99688 * 9 7 5 13 13 C 1.34778 * 119.99804 * 90.00211 * 3 2 1 14 14 O 1.21283 * 119.99648 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99892 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46834 * 179.97438 * 15 13 3 17 17 C 1.35891 * 119.70137 * 89.99980 * 16 15 13 18 18 N 1.29817 * 123.36290 * 179.69221 * 17 16 15 19 19 C 1.35694 * 121.62126 * 0.28453 * 18 17 16 20 20 C 1.39646 * 121.61164 * 180.02562 * 19 18 17 21 21 C 1.37630 * 119.72701 * 179.97438 * 20 19 18 22 22 C 1.39088 * 120.79290 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.74177 * 179.97438 * 22 21 20 24 24 C 1.37979 * 120.51066 * 359.97438 * 22 21 20 25 25 C 1.39326 * 119.49895 * 0.02562 * 24 22 21 26 26 C 1.35349 * 119.70235 * 270.25985 * 16 15 13 27 27 O 1.21732 * 121.29383 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46465 * 299.99432 * 1 2 3 30 30 H 1.08996 * 109.47584 * 59.99348 * 1 2 3 31 31 H 1.09009 * 109.46982 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.47584 * 120.00652 * 2 1 3 33 33 H 1.09009 * 109.47002 * 29.99706 * 4 3 2 34 34 H 1.08999 * 109.47466 * 149.99833 * 4 3 2 35 35 H 0.97002 * 120.00444 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47214 * 60.00010 * 15 13 3 37 37 H 1.08996 * 109.47323 * 299.99648 * 15 13 3 38 38 H 1.08002 * 118.32113 * 359.97438 * 17 16 15 39 39 H 1.08004 * 120.13750 * 359.95611 * 20 19 18 40 40 H 1.08005 * 119.60739 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.24636 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2308 -1.0960 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0976 -3.4166 10 1 6.1414 0.6410 -3.5946 11 1 6.1610 2.7976 -4.7026 12 1 6.8408 2.6208 -2.3814 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2032 3.5858 17 6 1.3436 3.0091 4.0981 18 7 1.5450 3.8261 5.0867 19 6 2.7592 3.9363 5.6824 20 6 2.9755 4.8149 6.7461 21 6 4.2229 4.8950 7.3222 22 6 5.2736 4.1110 6.8574 23 9 6.4895 4.2072 7.4382 24 6 5.0835 3.2359 5.8077 25 6 3.8275 3.1412 5.2122 26 6 3.5656 2.2259 4.0915 27 8 4.4424 1.5125 3.6395 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 3.6752 3.5174 -4.4434 36 1 2.6230 0.4186 2.5298 37 1 0.9446 1.0113 2.5303 38 1 0.3559 2.9645 3.6636 39 1 2.1674 5.4291 7.1151 40 1 4.3882 5.5755 8.1445 41 1 5.9022 2.6289 5.4505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:59 Heat of formation + Delta-G solvation = -79.420902 kcal Electronic energy + Delta-G solvation = -28241.712747 eV Core-core repulsion = 24035.666238 eV Total energy + Delta-G solvation = -4206.046509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.02577 -42.85337 -40.78025 -39.47451 -38.54500 -37.04247 -35.39148 -34.88697 -32.74692 -31.65721 -30.82609 -30.34722 -28.45846 -25.90908 -25.55209 -24.65824 -23.97570 -23.32271 -20.62933 -20.10341 -20.03823 -18.76073 -18.63430 -18.27755 -17.77142 -17.26212 -16.94453 -16.80729 -16.51396 -16.32332 -16.26523 -15.75701 -15.57086 -15.09423 -14.81012 -14.58372 -14.54506 -14.46531 -14.41191 -13.93952 -13.69259 -13.40464 -13.24614 -13.15069 -13.07627 -12.81182 -12.68081 -12.53390 -12.17756 -11.87135 -11.78068 -11.59607 -11.42525 -11.17444 -10.68915 -10.63430 -10.40587 -9.52185 -9.13441 -8.27950 -6.41731 -0.70206 -0.46143 0.95108 1.12404 1.30602 1.34625 1.41636 1.52315 1.65175 2.24410 2.37440 2.73795 2.85402 3.01880 3.02141 3.18465 3.46577 3.48728 3.67110 3.79431 3.89660 4.00406 4.04183 4.23540 4.34909 4.45017 4.59151 4.67205 4.78683 4.86082 4.94081 4.95866 5.03124 5.09062 5.14819 5.19644 5.34598 5.46490 5.52868 5.59954 5.78988 6.01910 6.40598 6.62784 6.70556 6.70915 7.20748 7.35457 8.78580 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003361 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.350974 B = 8329.534144 C = 9642.955631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 N -0.594 5.594 4 C 0.266 3.734 5 C -0.548 4.548 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.286 1.286 13 C 0.482 3.518 14 O -0.592 6.592 15 C 0.086 3.914 16 N -0.527 5.527 17 C 0.391 3.609 18 N -0.530 5.530 19 C 0.138 3.862 20 C -0.075 4.075 21 C -0.088 4.088 22 C 0.072 3.928 23 F -0.138 7.138 24 C -0.094 4.094 25 C -0.194 4.194 26 C 0.539 3.461 27 O -0.545 6.545 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.030 0.970 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.131 0.869 37 H 0.186 0.814 38 H 0.249 0.751 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 -3.900 22.032 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.144 3.856 5 C -0.586 4.586 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.198 1.198 12 H -0.212 1.212 13 C 0.269 3.731 14 O -0.473 6.473 15 C -0.039 4.039 16 N -0.247 5.247 17 C 0.106 3.894 18 N -0.250 5.250 19 C 0.028 3.972 20 C -0.094 4.094 21 C -0.108 4.108 22 C 0.053 3.947 23 F -0.116 7.116 24 C -0.115 4.115 25 C -0.200 4.200 26 C 0.333 3.667 27 O -0.422 6.422 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.048 0.952 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.203 0.797 38 H 0.264 0.736 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.854 -3.130 22.003 23.923 hybrid contribution 2.324 -0.386 -1.414 2.747 sum -6.530 -3.517 20.589 21.884 Atomic orbital electron populations 1.22175 0.93312 1.03901 1.02499 1.21900 0.96192 0.80746 1.04181 1.48247 1.63175 1.15234 1.05853 1.18691 0.94892 0.91638 0.80366 1.21689 0.98273 1.32133 1.06516 0.93626 1.25741 1.01942 0.94505 0.96472 1.70011 1.37548 1.33950 1.14789 0.85608 0.79505 0.79186 0.77374 1.18355 1.19810 1.21207 1.21366 0.78011 0.86836 0.86847 1.90703 1.47887 1.20878 1.87876 1.22144 1.08321 0.92559 0.80924 1.46300 1.10650 1.37202 1.30553 1.25727 0.94788 0.81719 0.87191 1.68723 1.21381 1.22056 1.12811 1.19235 0.87857 0.94599 0.95518 1.21088 0.98011 0.97128 0.93153 1.21638 0.90500 0.97906 1.00749 1.17644 0.81908 0.99941 0.95248 1.91515 1.41781 1.95281 1.83058 1.20922 0.96797 0.98577 0.95173 1.20366 0.96838 1.02959 0.99854 1.18692 0.81996 0.82827 0.83164 1.90855 1.44884 1.43851 1.62581 0.88550 0.90552 0.94213 0.91190 0.88022 0.95229 0.98335 0.92302 0.85123 0.79654 0.73559 0.80057 0.79692 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.24 71.98 0.74 -2.22 16 2 C 0.09 2.41 5.93 86.38 0.51 2.92 16 3 N -0.59 -23.35 2.46 -826.14 -2.03 -25.38 16 4 C 0.27 13.96 5.16 85.63 0.44 14.40 16 5 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.76 5.46 84.65 0.46 1.22 16 8 N -0.92 -55.97 13.29 21.44 0.28 -55.68 16 9 Si 0.96 46.29 29.54 68.60 2.03 48.31 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 C 0.48 18.57 7.74 87.66 0.68 19.25 16 14 O -0.59 -29.99 16.01 -3.04 -0.05 -30.04 16 15 C 0.09 2.04 4.39 85.63 0.38 2.42 16 16 N -0.53 -14.16 2.10 -651.90 -1.37 -15.53 16 17 C 0.39 8.03 11.41 180.19 2.06 10.08 16 18 N -0.53 -12.08 10.37 -191.89 -1.99 -14.07 16 19 C 0.14 3.40 6.63 39.62 0.26 3.66 16 20 C -0.08 -1.30 10.03 22.47 0.23 -1.08 16 21 C -0.09 -1.41 9.98 22.33 0.22 -1.19 16 22 C 0.07 1.63 7.29 22.41 0.16 1.79 16 23 F -0.14 -3.17 17.26 44.97 0.78 -2.39 16 24 C -0.09 -2.66 9.65 22.47 0.22 -2.44 16 25 C -0.19 -5.83 5.89 -19.97 -0.12 -5.95 16 26 C 0.54 18.48 7.66 86.46 0.66 19.14 16 27 O -0.54 -22.54 16.32 -4.45 -0.07 -22.61 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.01 7.22 -2.38 -0.02 1.00 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 32 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 33 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 34 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.13 3.06 6.73 -2.39 -0.02 3.05 16 37 H 0.19 1.92 7.04 -2.39 -0.02 1.90 16 38 H 0.25 2.39 7.99 -2.91 -0.02 2.36 16 39 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.13 4.04 7.83 -2.91 -0.02 4.01 16 Total: -1.00 -88.92 360.82 5.79 -83.13 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.07 Total: 4.08 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 7.14 Total: 30.19 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -5.10 Total: -110.66 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.12 Total: -52.65 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -88.92 5.79 -83.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.709 kcal (2) G-P(sol) polarization free energy of solvation -88.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds