Wall clock time and date at job start Tue Mar 31 2020 17:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99857 * 2 1 4 4 N 1.46504 * 109.46876 * 125.00355 * 3 2 1 5 5 C 1.34775 * 119.99695 * 180.02562 * 4 3 2 6 6 S 1.71200 * 120.00323 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.40099 * 119.99900 * 359.97438 * 7 5 4 9 9 C 1.29764 * 119.99815 * 180.02562 * 8 7 5 10 10 C 1.47492 * 119.99786 * 180.02562 * 9 8 7 11 11 C 1.39727 * 120.13106 * 359.97438 * 10 9 8 12 12 C 1.37939 * 119.95243 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.21558 * 359.74727 * 12 11 10 14 14 C 1.38825 * 120.26325 * 0.51128 * 13 12 11 15 15 O 1.35903 * 119.98069 * 179.76851 * 14 13 12 16 16 C 1.42898 * 116.99959 * 359.71831 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38466 * 120.04444 * 359.48651 * 14 13 12 27 27 H 1.08000 * 119.99836 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99926 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00106 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47180 * 5.00421 * 3 2 1 31 31 H 1.08993 * 109.47093 * 245.00264 * 3 2 1 32 32 H 0.97001 * 120.00192 * 0.02562 * 4 3 2 33 33 H 0.97003 * 119.99806 * 179.97438 * 7 5 4 34 34 H 1.07999 * 120.00318 * 0.02562 * 9 8 7 35 35 H 1.07997 * 120.02154 * 0.02562 * 11 10 9 36 36 H 1.08007 * 119.88955 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.86619 * 180.25738 * 13 12 11 38 38 H 1.09002 * 109.47259 * 300.00539 * 16 15 14 39 39 H 1.09001 * 109.47074 * 60.00561 * 16 15 14 40 40 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 42 42 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.11184 * 180.23313 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 16 3.6882 3.7457 0.2676 7 7 4.6345 2.4334 2.3740 8 7 4.7087 1.3393 3.2459 9 6 5.5327 1.3630 4.2480 10 6 5.6112 0.2110 5.1656 11 6 4.7992 -0.9071 4.9587 12 6 4.8752 -1.9823 5.8194 13 6 5.7569 -1.9601 6.8847 14 6 6.5641 -0.8516 7.1018 15 8 7.4251 -0.8340 8.1532 16 6 7.4423 -1.9871 8.9970 17 6 8.4648 -1.7843 10.1169 18 6 8.4835 -3.0006 11.0064 19 1 7.8316 -3.8351 10.7940 20 6 9.3336 -3.0487 12.0909 21 7 10.1278 -2.0327 12.3494 22 14 9.3562 -4.5561 13.1940 23 1 10.3551 -5.5287 12.6825 24 1 9.7205 -4.1528 14.5759 25 1 8.0111 -5.1852 13.2001 26 6 6.4967 0.2336 6.2445 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.0452 0.5744 1.7351 33 1 5.1994 3.2085 2.5192 34 1 6.1611 2.2263 4.4102 35 1 4.1125 -0.9294 4.1254 36 1 4.2473 -2.8462 5.6583 37 1 5.8148 -2.8067 7.5527 38 1 6.4533 -2.1348 9.4307 39 1 7.7159 -2.8634 8.4092 40 1 9.4539 -1.6364 9.6835 41 1 8.1910 -0.9082 10.7047 42 1 10.7261 -2.0667 13.1121 43 1 7.1268 1.0949 6.4102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726736308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:21 Heat of formation + Delta-G solvation = 56.695381 kcal Electronic energy + Delta-G solvation = -23627.277848 eV Core-core repulsion = 19993.346960 eV Total energy + Delta-G solvation = -3633.930888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.11298 -39.59421 -37.86860 -36.93606 -34.66937 -33.48732 -32.83209 -31.23672 -30.36679 -29.26747 -26.79629 -25.55606 -24.74347 -23.01375 -22.66727 -21.48261 -20.93653 -20.42414 -18.98584 -18.45197 -17.61645 -16.51322 -16.43468 -16.25894 -15.87311 -15.62997 -15.51800 -15.34087 -14.82725 -14.70394 -14.48502 -14.04447 -13.66543 -13.47704 -13.10809 -13.00114 -12.40988 -12.09473 -11.90776 -11.78551 -11.73533 -11.56450 -11.45384 -11.03475 -10.97538 -10.83793 -10.62594 -10.29618 -10.02617 -9.77218 -9.76432 -9.40172 -8.84267 -8.53426 -8.24219 -8.07424 -8.01876 -6.18622 -4.23873 0.17151 1.07672 1.20254 1.37517 1.48410 2.07179 2.16758 2.66094 3.21405 3.27671 3.29879 3.57067 3.70447 4.10077 4.13424 4.32613 4.47803 4.52420 4.75961 4.87588 4.96948 5.01751 5.12159 5.18078 5.18436 5.24319 5.30144 5.49780 5.67964 5.78549 5.85604 5.88049 5.92821 5.98486 6.04563 6.18915 6.29976 6.31287 6.53080 6.61797 6.66536 7.27620 7.37146 7.52592 7.67260 7.88822 8.13479 8.81547 9.41073 10.92755 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025492 B = 0.001586 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.109187 B =17646.480558 C =18684.149767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.186 4.186 3 C 0.147 3.853 4 N -0.661 5.661 5 C 0.593 3.407 6 S -0.632 6.632 7 N -0.539 5.539 8 N -0.293 5.293 9 C 0.169 3.831 10 C -0.038 4.038 11 C -0.124 4.124 12 C -0.086 4.086 13 C -0.186 4.186 14 C 0.142 3.858 15 O -0.313 6.313 16 C 0.064 3.936 17 C 0.025 3.975 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.123 4.123 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.412 0.588 33 H 0.417 0.583 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.924 3.016 -21.194 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.205 4.205 3 C 0.024 3.976 4 N -0.288 5.288 5 C 0.233 3.767 6 S -0.506 6.506 7 N -0.263 5.263 8 N -0.099 5.099 9 C -0.042 4.042 10 C -0.041 4.041 11 C -0.145 4.145 12 C -0.104 4.104 13 C -0.206 4.206 14 C 0.095 3.905 15 O -0.226 6.226 16 C -0.010 4.010 17 C -0.012 4.012 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.145 4.145 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.251 0.749 33 H 0.261 0.739 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.556 3.525 -22.335 28.025 hybrid contribution 0.954 -1.172 1.926 2.448 sum -15.602 2.353 -20.409 25.797 Atomic orbital electron populations 1.24053 0.95652 1.02801 0.96630 1.22984 0.96378 0.97839 1.03296 1.20889 0.91499 0.96522 0.88649 1.45021 1.36886 1.16927 1.30012 1.22041 0.80150 0.90138 0.84350 1.93709 1.83960 1.27031 1.45941 1.46216 1.38963 1.17029 1.24100 1.74534 1.21595 1.09703 1.04063 1.24498 0.92352 0.97294 0.90019 1.17921 0.98838 0.92772 0.94589 1.21090 1.00012 0.93072 1.00321 1.20897 0.97525 0.98170 0.93847 1.21644 0.98943 0.99209 1.00770 1.18983 0.89776 0.93321 0.88411 1.86202 1.55902 1.44145 1.36320 1.23401 1.01667 0.84587 0.91339 1.19133 0.93223 0.98314 0.90543 1.20949 1.22885 1.01892 1.11014 0.92342 1.24988 0.95153 0.96491 0.97493 1.69971 1.23607 1.30328 1.28689 0.86482 0.78473 0.82591 0.79808 1.20468 1.21004 1.19765 1.20442 1.00879 0.98789 0.94371 0.87842 0.87520 0.86477 0.88910 0.88485 0.74931 0.73883 0.85223 0.85525 0.85485 0.84656 0.92920 0.92921 0.95330 0.95314 0.92635 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 14.32 29.01 0.42 -0.19 16 2 C -0.19 -0.85 9.63 -36.02 -0.35 -1.20 16 3 C 0.15 0.95 5.57 -5.19 -0.03 0.92 16 4 N -0.66 -4.97 5.51 -63.21 -0.35 -5.31 16 5 C 0.59 5.79 7.97 -86.92 -0.69 5.10 16 6 S -0.63 -8.41 29.32 -107.50 -3.15 -11.56 16 7 N -0.54 -4.48 6.26 29.96 0.19 -4.30 16 8 N -0.29 -2.35 9.47 32.16 0.30 -2.04 16 9 C 0.17 1.27 10.75 -14.66 -0.16 1.11 16 10 C -0.04 -0.37 5.87 -105.06 -0.62 -0.98 16 11 C -0.12 -1.17 9.58 -39.13 -0.37 -1.55 16 12 C -0.09 -0.87 10.02 -39.67 -0.40 -1.27 16 13 C -0.19 -2.34 9.03 -39.34 -0.36 -2.70 16 14 C 0.14 2.04 6.68 -39.28 -0.26 1.78 16 15 O -0.31 -5.62 10.13 -19.44 -0.20 -5.81 16 16 C 0.06 1.23 4.68 37.16 0.17 1.41 16 17 C 0.02 0.62 5.34 -27.89 -0.15 0.47 16 18 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.12 -1.42 9.73 -38.99 -0.38 -1.80 16 27 H 0.10 0.38 7.84 -52.49 -0.41 -0.03 16 28 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 29 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 30 H 0.09 0.66 7.64 -51.93 -0.40 0.26 16 31 H 0.10 0.69 7.99 -51.93 -0.42 0.28 16 32 H 0.41 2.70 7.50 -40.82 -0.31 2.40 16 33 H 0.42 2.99 8.63 -182.59 -1.58 1.41 16 34 H 0.13 0.65 8.02 -52.49 -0.42 0.23 16 35 H 0.13 0.98 7.55 -52.49 -0.40 0.59 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.14 1.69 6.28 -52.49 -0.33 1.36 16 38 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 39 H 0.05 0.96 7.64 -51.93 -0.40 0.56 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 43 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -31.89 389.92 -12.32 -44.21 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.13 Total: -0.05 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.58 Total: -11.71 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.88 Total: -36.43 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.20 Total: -5.81 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -3.15 Total: -11.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.89 -12.32 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726736308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.905 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds