Wall clock time and date at job start Tue Mar 31 2020 17:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99857 * 2 1 4 4 N 1.46504 * 109.46876 * 125.00355 * 3 2 1 5 5 C 1.34775 * 119.99695 * 180.02562 * 4 3 2 6 6 S 1.71200 * 120.00323 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.40099 * 119.99900 * 359.97438 * 7 5 4 9 9 C 1.29764 * 119.99815 * 180.02562 * 8 7 5 10 10 C 1.47492 * 119.99786 * 180.02562 * 9 8 7 11 11 C 1.39727 * 120.13106 * 359.97438 * 10 9 8 12 12 C 1.37939 * 119.95243 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.21558 * 359.74727 * 12 11 10 14 14 C 1.38825 * 120.26325 * 0.51128 * 13 12 11 15 15 O 1.35903 * 119.98069 * 179.76851 * 14 13 12 16 16 C 1.42898 * 116.99959 * 359.71831 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38466 * 120.04444 * 359.48651 * 14 13 12 27 27 H 1.08000 * 119.99836 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99926 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00106 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47180 * 5.00421 * 3 2 1 31 31 H 1.08993 * 109.47093 * 245.00264 * 3 2 1 32 32 H 0.97001 * 120.00192 * 0.02562 * 4 3 2 33 33 H 0.97003 * 119.99806 * 179.97438 * 7 5 4 34 34 H 1.07999 * 120.00318 * 0.02562 * 9 8 7 35 35 H 1.07997 * 120.02154 * 0.02562 * 11 10 9 36 36 H 1.08007 * 119.88955 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.86619 * 180.25738 * 13 12 11 38 38 H 1.09002 * 109.47259 * 300.00539 * 16 15 14 39 39 H 1.09001 * 109.47074 * 60.00561 * 16 15 14 40 40 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 42 42 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.11184 * 180.23313 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 16 3.6882 3.7457 0.2676 7 7 4.6345 2.4334 2.3740 8 7 4.7087 1.3393 3.2459 9 6 5.5327 1.3630 4.2480 10 6 5.6112 0.2110 5.1656 11 6 4.7992 -0.9071 4.9587 12 6 4.8752 -1.9823 5.8194 13 6 5.7569 -1.9601 6.8847 14 6 6.5641 -0.8516 7.1018 15 8 7.4251 -0.8340 8.1532 16 6 7.4423 -1.9871 8.9970 17 6 8.4648 -1.7843 10.1169 18 6 8.4835 -3.0006 11.0064 19 1 7.8316 -3.8351 10.7940 20 6 9.3336 -3.0487 12.0909 21 7 10.1278 -2.0327 12.3494 22 14 9.3562 -4.5561 13.1940 23 1 10.3551 -5.5287 12.6825 24 1 9.7205 -4.1528 14.5759 25 1 8.0111 -5.1852 13.2001 26 6 6.4967 0.2336 6.2445 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.0452 0.5744 1.7351 33 1 5.1994 3.2085 2.5192 34 1 6.1611 2.2263 4.4102 35 1 4.1125 -0.9294 4.1254 36 1 4.2473 -2.8462 5.6583 37 1 5.8148 -2.8067 7.5527 38 1 6.4533 -2.1348 9.4307 39 1 7.7159 -2.8634 8.4092 40 1 9.4539 -1.6364 9.6835 41 1 8.1910 -0.9082 10.7047 42 1 10.7261 -2.0667 13.1121 43 1 7.1268 1.0949 6.4102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726736308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:20 Heat of formation + Delta-G solvation = 39.053691 kcal Electronic energy + Delta-G solvation = -23628.042849 eV Core-core repulsion = 19993.346960 eV Total energy + Delta-G solvation = -3634.695889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10294 -40.35767 -38.83166 -37.68765 -35.51245 -35.19255 -33.45821 -32.61498 -31.50349 -30.37614 -27.37960 -27.06017 -25.79534 -24.01777 -23.56557 -22.82731 -21.56708 -21.30202 -19.80606 -19.16811 -18.75769 -18.07126 -17.31332 -16.94745 -16.92453 -16.80822 -16.61387 -16.29821 -16.15412 -15.52241 -15.36957 -14.60549 -14.48632 -14.35536 -14.31831 -14.29036 -13.83179 -13.24998 -13.17988 -12.75811 -12.75025 -12.54906 -12.50554 -12.34269 -12.14830 -12.08011 -11.63952 -11.58968 -11.53129 -11.36559 -10.73946 -10.60653 -10.39206 -9.64046 -9.23674 -9.04138 -9.03827 -8.25699 -6.38834 -0.59171 0.27524 0.40263 0.48657 1.05511 1.32676 1.40491 1.42629 1.43767 1.54804 2.05426 2.27943 2.51437 2.84166 3.09312 3.45152 3.71076 3.82264 3.94775 4.09916 4.13911 4.19557 4.25177 4.30710 4.35173 4.49875 4.50836 4.63192 4.74947 4.76780 4.94612 4.96167 5.00673 5.27148 5.32053 5.37690 5.46334 5.49434 5.50056 5.61749 5.67161 5.68566 5.80358 6.05925 6.08586 6.54050 6.61173 6.76532 7.31483 8.87033 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025492 B = 0.001586 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.109187 B =17646.480558 C =18684.149767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.192 4.192 3 C 0.148 3.852 4 N -0.644 5.644 5 C 0.609 3.391 6 S -0.709 6.709 7 N -0.531 5.531 8 N -0.294 5.294 9 C 0.175 3.825 10 C -0.033 4.033 11 C -0.115 4.115 12 C -0.083 4.083 13 C -0.196 4.196 14 C 0.103 3.897 15 O -0.338 6.338 16 C 0.084 3.916 17 C 0.026 3.974 18 C -0.546 4.546 19 H 0.072 0.928 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.124 4.124 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.421 0.579 33 H 0.423 0.577 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.132 0.868 38 H 0.062 0.938 39 H 0.062 0.938 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.266 0.734 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 1.090 -21.955 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.026 3.974 4 N -0.271 5.271 5 C 0.245 3.755 6 S -0.585 6.585 7 N -0.254 5.254 8 N -0.099 5.099 9 C -0.035 4.035 10 C -0.036 4.036 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.216 4.216 14 C 0.058 3.942 15 O -0.252 6.252 16 C 0.010 3.990 17 C -0.011 4.011 18 C -0.583 4.583 19 H 0.090 0.910 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.146 4.146 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.261 0.739 33 H 0.268 0.732 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.075 0.925 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.383 1.574 -23.108 29.570 hybrid contribution 1.428 -0.574 2.083 2.590 sum -16.956 1.000 -21.025 27.029 Atomic orbital electron populations 1.24241 0.95525 1.03590 0.95146 1.22919 0.96497 0.97094 1.04540 1.20918 0.91126 0.97555 0.87845 1.45093 1.35810 1.16194 1.29968 1.21535 0.80517 0.89546 0.83941 1.93865 1.86001 1.29928 1.48678 1.46071 1.38398 1.17379 1.23567 1.74524 1.21958 1.09272 1.04190 1.24567 0.92376 0.97390 0.89159 1.18001 0.98019 0.93533 0.94074 1.21456 0.99413 0.92386 1.00287 1.21202 0.96842 0.99336 0.92686 1.21741 0.99459 0.98603 1.01775 1.19301 0.90910 0.95414 0.88580 1.86098 1.57934 1.43412 1.37806 1.22868 1.00191 0.85508 0.90421 1.18973 0.93377 0.96818 0.91951 1.21417 1.22900 1.02682 1.11344 0.91026 1.26003 0.94678 0.99733 0.99216 1.70115 1.24591 1.32706 1.29499 0.85328 0.79134 0.78510 0.77359 1.19675 1.20895 1.18288 1.20600 1.01296 0.98364 0.94298 0.87839 0.86003 0.85309 0.89713 0.89338 0.73888 0.73201 0.82439 0.83188 0.82673 0.85036 0.91961 0.91935 0.98253 0.98233 0.92537 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 14.32 67.78 0.97 0.14 16 2 C -0.19 -1.34 9.63 25.65 0.25 -1.10 16 3 C 0.15 1.73 5.57 85.63 0.48 2.21 16 4 N -0.64 -8.44 5.51 -353.89 -1.95 -10.39 16 5 C 0.61 11.05 7.97 179.05 1.43 12.47 16 6 S -0.71 -19.06 29.32 -56.49 -1.66 -20.72 16 7 N -0.53 -7.65 6.26 -59.12 -0.37 -8.02 16 8 N -0.29 -3.73 9.47 -52.15 -0.49 -4.22 16 9 C 0.18 2.05 10.75 87.44 0.94 2.99 16 10 C -0.03 -0.54 5.87 -20.15 -0.12 -0.66 16 11 C -0.12 -1.75 9.58 22.56 0.22 -1.53 16 12 C -0.08 -1.42 10.02 22.21 0.22 -1.19 16 13 C -0.20 -4.67 9.03 22.43 0.20 -4.47 16 14 C 0.10 2.91 6.68 22.46 0.15 3.06 16 15 O -0.34 -12.46 10.13 -92.46 -0.94 -13.40 16 16 C 0.08 3.32 4.68 71.98 0.34 3.66 16 17 C 0.03 1.34 5.34 29.85 0.16 1.50 16 18 C -0.55 -29.39 9.11 25.60 0.23 -29.16 16 19 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 22 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 C -0.12 -2.69 9.73 22.65 0.22 -2.47 16 27 H 0.10 0.58 7.84 -2.91 -0.02 0.56 16 28 H 0.12 0.35 8.06 -2.91 -0.02 0.32 16 29 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 30 H 0.08 1.17 7.64 -2.38 -0.02 1.15 16 31 H 0.09 1.23 7.99 -2.39 -0.02 1.21 16 32 H 0.42 4.25 7.50 -92.71 -0.70 3.56 16 33 H 0.42 5.24 8.63 -213.32 -1.84 3.40 16 34 H 0.16 1.01 8.02 -2.91 -0.02 0.98 16 35 H 0.15 1.61 7.55 -2.91 -0.02 1.59 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.13 3.15 6.28 -2.91 -0.02 3.14 16 38 H 0.06 2.28 7.67 -2.39 -0.02 2.27 16 39 H 0.06 2.29 7.64 -2.39 -0.02 2.27 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -71.78 389.92 1.55 -70.23 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -1.50 Total: 11.09 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 6.15 Total: -13.95 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.53 Total: -77.24 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.94 Total: -13.40 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -19.06 SS G_CDS: -1.66 Total: -20.72 kcal Total: -71.78 1.55 -70.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726736308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.285 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds