Wall clock time and date at job start Tue Mar 31 2020 17:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47304 * 2 1 4 4 N 1.30858 * 126.19792 * 88.21679 * 3 2 1 5 5 C 1.34599 * 107.28809 * 180.02562 * 4 3 2 6 6 C 1.47704 * 126.02904 * 179.97438 * 5 4 3 7 7 O 1.21482 * 119.99890 * 359.97438 * 6 5 4 8 8 O 1.34730 * 120.00128 * 179.97438 * 6 5 4 9 9 C 1.45196 * 116.99994 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46968 * 330.00094 * 9 8 6 11 11 C 1.53004 * 109.47207 * 89.99727 * 9 8 6 12 12 C 1.50697 * 109.47194 * 209.99832 * 9 8 6 13 13 H 1.08008 * 119.99900 * 0.02562 * 12 9 8 14 14 C 1.37874 * 119.99998 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00332 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99811 * 180.02562 * 14 12 9 17 17 H 1.48509 * 109.47127 * 89.99971 * 16 14 12 18 18 H 1.48504 * 109.46968 * 209.99756 * 16 14 12 19 19 H 1.48498 * 109.47619 * 329.99807 * 16 14 12 20 20 N 1.31621 * 107.94384 * 0.25899 * 5 4 3 21 21 N 1.28864 * 108.69232 * 359.56263 * 20 5 4 22 22 C 1.40180 * 125.76350 * 180.12888 * 21 20 5 23 23 C 1.38822 * 120.07734 * 130.09649 * 22 21 20 24 24 C 1.38119 * 119.95750 * 179.76557 * 23 22 21 25 25 C 1.38308 * 120.11308 * 0.51470 * 24 23 22 26 26 C 1.38234 * 120.15686 * 359.73832 * 25 24 23 27 27 C 1.38334 * 120.04782 * 0.02562 * 26 25 24 28 28 F 1.35103 * 120.06357 * 179.97438 * 27 26 25 29 29 H 1.09005 * 109.46876 * 60.00027 * 1 2 3 30 30 H 1.08990 * 109.47408 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47186 * 300.00424 * 1 2 3 32 32 H 1.08999 * 109.47186 * 239.99575 * 2 1 3 33 33 H 1.09007 * 109.46917 * 119.99424 * 2 1 3 34 34 H 1.08998 * 109.47214 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.47270 * 300.00105 * 11 9 8 36 36 H 1.08997 * 109.47061 * 60.00018 * 11 9 8 37 37 H 0.96996 * 120.00100 * 179.97438 * 15 14 12 38 38 H 1.08003 * 120.02008 * 0.02562 * 23 22 21 39 39 H 1.08004 * 119.94128 * 180.22851 * 24 23 22 40 40 H 1.08004 * 119.91650 * 179.76708 * 25 24 23 41 41 H 1.08005 * 119.97618 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2590 2.1604 1.0555 5 6 2.6958 3.3566 0.6195 6 6 3.0732 4.5055 1.4675 7 8 3.0014 4.4172 2.6770 8 8 3.4971 5.6514 0.8997 9 6 3.8507 6.7389 1.7944 10 1 3.2510 6.6721 2.7022 11 6 5.3344 6.6408 2.1550 12 6 3.5854 8.0565 1.1129 13 1 3.1901 8.0747 0.1079 14 6 3.8473 9.2387 1.7723 15 7 4.3281 9.2166 2.9961 16 14 3.5177 10.8720 0.9277 17 1 2.1276 11.3072 1.2169 18 1 4.4711 11.8920 1.4335 19 1 3.6923 10.7152 -0.5387 20 7 2.7213 3.3240 -0.6961 21 7 2.3295 2.1606 -1.0881 22 6 2.2231 1.7379 -2.4204 23 6 2.7905 0.5342 -2.8158 24 6 2.6800 0.1177 -4.1280 25 6 2.0142 0.9030 -5.0515 26 6 1.4519 2.1050 -4.6642 27 6 1.5544 2.5262 -3.3505 28 9 1.0055 3.7011 -2.9716 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.5997 7.4570 2.8270 35 1 5.5263 5.6879 2.6479 36 1 5.9341 6.7076 1.2472 37 1 4.5127 10.0483 3.4598 38 1 3.3143 -0.0783 -2.0967 39 1 3.1183 -0.8206 -4.4345 40 1 1.9329 0.5761 -6.0777 41 1 0.9323 2.7157 -5.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744135107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:32 Heat of formation + Delta-G solvation = -6.820544 kcal Electronic energy + Delta-G solvation = -28133.097056 eV Core-core repulsion = 23930.198734 eV Total energy + Delta-G solvation = -4202.898322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25344 -43.70555 -39.66046 -39.18795 -35.75629 -34.83191 -34.68364 -33.21749 -31.38166 -30.91151 -30.04397 -29.27227 -25.47026 -25.20558 -25.00989 -23.48819 -22.82433 -21.43486 -21.09865 -19.70518 -18.56774 -17.83626 -17.34223 -17.18576 -16.48966 -16.17789 -15.90136 -15.66164 -15.34059 -15.04016 -14.77828 -14.72638 -14.48744 -14.30944 -13.66469 -13.18500 -13.01978 -12.83661 -12.64255 -12.49421 -12.21945 -11.97891 -11.87939 -11.86398 -11.35815 -11.21694 -11.02852 -10.83621 -10.77217 -10.47688 -10.32770 -10.24214 -9.94574 -9.83261 -9.53249 -9.47229 -9.05651 -8.87417 -8.45079 -6.13936 -4.20284 0.21137 0.52589 1.43817 1.91187 2.05270 2.87440 3.08735 3.29449 3.34596 3.40862 3.56602 3.61963 3.97597 4.05967 4.20416 4.30268 4.36253 4.57955 4.62006 4.82698 4.83351 4.86815 5.09636 5.19176 5.31757 5.38134 5.41986 5.43025 5.51329 5.62835 5.69817 5.85363 5.97254 6.06280 6.29478 6.52665 6.66068 6.92292 6.94385 7.11976 7.60781 7.74489 7.87304 7.99868 8.16221 8.62935 8.90971 9.44380 10.93787 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003167 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.671072 B = 8838.203328 C =10056.113158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.220 3.780 4 N -0.447 5.447 5 C 0.183 3.817 6 C 0.553 3.447 7 O -0.486 6.486 8 O -0.335 6.335 9 C 0.215 3.785 10 H 0.050 0.950 11 C -0.156 4.156 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.913 3.087 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 N -0.239 5.239 21 N -0.260 5.260 22 C 0.090 3.910 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.076 4.076 26 C -0.142 4.142 27 C 0.130 3.870 28 F -0.115 7.115 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.017 0.983 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -23.798 -17.098 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.055 4.055 4 N -0.171 5.171 5 C -0.095 4.095 6 C 0.392 3.608 7 O -0.371 6.371 8 O -0.249 6.249 9 C 0.163 3.837 10 H 0.068 0.932 11 C -0.213 4.213 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.740 3.260 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 N -0.077 5.077 21 N -0.051 5.051 22 C -0.002 4.002 23 C -0.102 4.102 24 C -0.134 4.134 25 C -0.094 4.094 26 C -0.161 4.161 27 C 0.109 3.891 28 F -0.093 7.093 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.624 -23.027 -16.465 28.862 hybrid contribution -0.205 1.075 -0.248 1.122 sum -5.829 -21.953 -16.714 28.200 Atomic orbital electron populations 1.21749 0.92992 1.02863 1.03079 1.20248 0.97335 0.85534 1.05068 1.25165 1.00906 0.98175 0.81209 1.71281 1.17015 1.01783 1.27020 1.22923 1.05403 0.94115 0.87086 1.18759 0.75295 0.82043 0.84717 1.90832 1.49840 1.82395 1.14048 1.86637 1.73620 1.21091 1.43555 1.20806 0.93310 0.80255 0.89288 0.93208 1.22181 0.97472 1.00619 1.01073 1.21021 1.44229 0.88359 1.02089 0.91122 1.24878 0.94729 0.99358 0.94978 1.69900 1.43677 1.27816 1.11353 0.86245 0.78146 0.81907 0.79678 1.20377 1.20935 1.19556 1.74786 1.16604 1.01812 1.14467 1.44293 1.45784 1.09259 1.05724 1.17556 1.04670 0.97271 0.80653 1.21062 0.97428 0.94079 0.97599 1.21118 0.99727 1.00914 0.91662 1.21241 0.94902 0.92751 1.00526 1.21221 1.02754 0.98542 0.93630 1.17673 0.95512 0.82992 0.92945 1.91641 1.82403 1.43562 1.91684 0.92674 0.90823 0.91315 0.89301 0.87501 0.87977 0.96348 0.94254 0.92377 0.83722 0.83770 0.83872 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.04 -0.36 6.21 -27.88 -0.17 -0.53 16 3 C 0.22 3.16 7.07 -155.25 -1.10 2.06 16 4 N -0.45 -8.50 11.41 -8.49 -0.10 -8.59 16 5 C 0.18 3.96 7.98 -156.28 -1.25 2.71 16 6 C 0.55 13.88 7.95 34.60 0.27 14.16 16 7 O -0.49 -13.05 16.35 -19.25 -0.31 -13.37 16 8 O -0.33 -9.00 9.87 -40.57 -0.40 -9.40 16 9 C 0.22 6.17 2.56 -27.88 -0.07 6.10 16 10 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 11 C -0.16 -4.16 9.33 37.16 0.35 -3.82 16 12 C -0.52 -15.31 8.90 -34.44 -0.31 -15.62 16 13 H 0.07 2.07 7.81 -52.48 -0.41 1.66 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -25.98 11.32 55.43 0.63 -25.35 16 16 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 N -0.24 -4.76 11.54 32.06 0.37 -4.39 16 21 N -0.26 -3.98 3.30 -7.94 -0.03 -4.01 16 22 C 0.09 1.03 5.97 -83.52 -0.50 0.53 16 23 C -0.08 -0.58 8.31 -39.41 -0.33 -0.91 16 24 C -0.12 -0.51 10.04 -39.60 -0.40 -0.91 16 25 C -0.08 -0.34 10.04 -39.56 -0.40 -0.74 16 26 C -0.14 -1.02 10.02 -39.55 -0.40 -1.41 16 27 C 0.13 1.48 7.27 -39.24 -0.29 1.19 16 28 F -0.11 -1.73 16.66 2.25 0.04 -1.69 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.49 5.42 -51.93 -0.28 0.21 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 2.86 6.07 -51.93 -0.32 2.54 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.15 0.78 7.01 -52.48 -0.37 0.41 16 39 H 0.14 0.20 8.06 -52.48 -0.42 -0.22 16 40 H 0.14 0.21 8.06 -52.48 -0.42 -0.21 16 41 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -36.75 362.95 -8.34 -45.10 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -4.69 Total: -4.30 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.30 Total: 3.72 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.87 Total: -42.34 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.72 Total: -22.77 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.75 -8.34 -45.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.279 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds