Wall clock time and date at job start Tue Mar 31 2020 17:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47304 * 2 1 4 4 N 1.30858 * 126.19792 * 88.21679 * 3 2 1 5 5 C 1.34599 * 107.28809 * 180.02562 * 4 3 2 6 6 C 1.47704 * 126.02904 * 179.97438 * 5 4 3 7 7 O 1.21482 * 119.99890 * 359.97438 * 6 5 4 8 8 O 1.34730 * 120.00128 * 179.97438 * 6 5 4 9 9 C 1.45196 * 116.99994 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46968 * 330.00094 * 9 8 6 11 11 C 1.53004 * 109.47207 * 89.99727 * 9 8 6 12 12 C 1.50697 * 109.47194 * 209.99832 * 9 8 6 13 13 H 1.08008 * 119.99900 * 0.02562 * 12 9 8 14 14 C 1.37874 * 119.99998 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00332 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99811 * 180.02562 * 14 12 9 17 17 H 1.48509 * 109.47127 * 89.99971 * 16 14 12 18 18 H 1.48504 * 109.46968 * 209.99756 * 16 14 12 19 19 H 1.48498 * 109.47619 * 329.99807 * 16 14 12 20 20 N 1.31621 * 107.94384 * 0.25899 * 5 4 3 21 21 N 1.28864 * 108.69232 * 359.56263 * 20 5 4 22 22 C 1.40180 * 125.76350 * 180.12888 * 21 20 5 23 23 C 1.38822 * 120.07734 * 130.09649 * 22 21 20 24 24 C 1.38119 * 119.95750 * 179.76557 * 23 22 21 25 25 C 1.38308 * 120.11308 * 0.51470 * 24 23 22 26 26 C 1.38234 * 120.15686 * 359.73832 * 25 24 23 27 27 C 1.38334 * 120.04782 * 0.02562 * 26 25 24 28 28 F 1.35103 * 120.06357 * 179.97438 * 27 26 25 29 29 H 1.09005 * 109.46876 * 60.00027 * 1 2 3 30 30 H 1.08990 * 109.47408 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47186 * 300.00424 * 1 2 3 32 32 H 1.08999 * 109.47186 * 239.99575 * 2 1 3 33 33 H 1.09007 * 109.46917 * 119.99424 * 2 1 3 34 34 H 1.08998 * 109.47214 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.47270 * 300.00105 * 11 9 8 36 36 H 1.08997 * 109.47061 * 60.00018 * 11 9 8 37 37 H 0.96996 * 120.00100 * 179.97438 * 15 14 12 38 38 H 1.08003 * 120.02008 * 0.02562 * 23 22 21 39 39 H 1.08004 * 119.94128 * 180.22851 * 24 23 22 40 40 H 1.08004 * 119.91650 * 179.76708 * 25 24 23 41 41 H 1.08005 * 119.97618 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2590 2.1604 1.0555 5 6 2.6958 3.3566 0.6195 6 6 3.0732 4.5055 1.4675 7 8 3.0014 4.4172 2.6770 8 8 3.4971 5.6514 0.8997 9 6 3.8507 6.7389 1.7944 10 1 3.2510 6.6721 2.7022 11 6 5.3344 6.6408 2.1550 12 6 3.5854 8.0565 1.1129 13 1 3.1901 8.0747 0.1079 14 6 3.8473 9.2387 1.7723 15 7 4.3281 9.2166 2.9961 16 14 3.5177 10.8720 0.9277 17 1 2.1276 11.3072 1.2169 18 1 4.4711 11.8920 1.4335 19 1 3.6923 10.7152 -0.5387 20 7 2.7213 3.3240 -0.6961 21 7 2.3295 2.1606 -1.0881 22 6 2.2231 1.7379 -2.4204 23 6 2.7905 0.5342 -2.8158 24 6 2.6800 0.1177 -4.1280 25 6 2.0142 0.9030 -5.0515 26 6 1.4519 2.1050 -4.6642 27 6 1.5544 2.5262 -3.3505 28 9 1.0055 3.7011 -2.9716 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.5997 7.4570 2.8270 35 1 5.5263 5.6879 2.6479 36 1 5.9341 6.7076 1.2472 37 1 4.5127 10.0483 3.4598 38 1 3.3143 -0.0783 -2.0967 39 1 3.1183 -0.8206 -4.4345 40 1 1.9329 0.5761 -6.0777 41 1 0.9323 2.7157 -5.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744135107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:31 Heat of formation + Delta-G solvation = -29.425427 kcal Electronic energy + Delta-G solvation = -28134.077277 eV Core-core repulsion = 23930.198734 eV Total energy + Delta-G solvation = -4203.878543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.18242 -45.00472 -41.35241 -40.17086 -37.82032 -35.86744 -35.72571 -35.39115 -32.14240 -31.97511 -31.64223 -30.61984 -27.55301 -26.87555 -25.86888 -24.15380 -23.85452 -23.16894 -22.19544 -21.54049 -19.57675 -19.24141 -18.57949 -18.48037 -18.32358 -17.62455 -17.27143 -16.89511 -16.55143 -16.51040 -15.99449 -15.90697 -15.44811 -15.11436 -14.92901 -14.46684 -14.37153 -14.06043 -13.98645 -13.57624 -13.47669 -13.30779 -13.11352 -13.06406 -12.89023 -12.64011 -12.57037 -12.45868 -12.21964 -12.12532 -12.03207 -11.88346 -11.79625 -11.72743 -11.10986 -11.01199 -10.66527 -10.12708 -9.85168 -8.34330 -6.52061 -0.57894 -0.00847 0.05512 0.72843 0.81258 1.34680 1.40901 1.44007 1.55790 1.80513 2.33259 2.35830 2.87116 2.95190 2.98235 3.04417 3.52724 3.55819 3.81857 4.10497 4.15324 4.16988 4.17075 4.26160 4.32146 4.41970 4.67820 4.69632 4.70614 4.75590 4.81750 4.90492 4.93575 4.95840 5.08928 5.12327 5.23814 5.25475 5.36171 5.39265 5.49531 5.71217 5.74619 5.91554 6.40334 6.58525 6.77854 7.18222 8.74154 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003167 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.671072 B = 8838.203328 C =10056.113158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.235 3.765 4 N -0.480 5.480 5 C 0.147 3.853 6 C 0.553 3.447 7 O -0.516 6.516 8 O -0.344 6.344 9 C 0.216 3.784 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.553 4.553 13 H 0.063 0.937 14 C 0.019 3.981 15 N -0.914 5.914 16 Si 0.988 3.012 17 H -0.271 1.271 18 H -0.268 1.268 19 H -0.265 1.265 20 N -0.259 5.259 21 N -0.247 5.247 22 C 0.045 3.955 23 C -0.077 4.077 24 C -0.093 4.093 25 C -0.055 4.055 26 C -0.141 4.141 27 C 0.087 3.913 28 F -0.152 7.152 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.274 0.726 38 H 0.165 0.835 39 H 0.191 0.809 40 H 0.187 0.813 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -26.821 -20.780 34.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.038 4.038 4 N -0.205 5.205 5 C -0.129 4.129 6 C 0.393 3.607 7 O -0.403 6.403 8 O -0.259 6.259 9 C 0.164 3.836 10 H 0.032 0.968 11 C -0.199 4.199 12 C -0.590 4.590 13 H 0.082 0.918 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.810 3.190 17 H -0.196 1.196 18 H -0.193 1.193 19 H -0.189 1.189 20 N -0.100 5.100 21 N -0.038 5.038 22 C -0.045 4.045 23 C -0.097 4.097 24 C -0.111 4.111 25 C -0.072 4.072 26 C -0.160 4.160 27 C 0.066 3.934 28 F -0.130 7.130 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.183 0.817 39 H 0.208 0.792 40 H 0.204 0.796 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.583 -26.086 -20.164 33.440 hybrid contribution -0.263 1.776 0.685 1.922 sum -5.847 -24.310 -19.479 31.695 Atomic orbital electron populations 1.21758 0.92271 1.04790 1.01535 1.20691 0.97704 0.81830 1.07743 1.26245 0.98271 0.99548 0.79774 1.71200 1.18519 1.01324 1.29500 1.22226 1.08895 0.94177 0.87580 1.19229 0.74230 0.82194 0.85014 1.90781 1.51189 1.82933 1.15356 1.86622 1.74208 1.21690 1.43341 1.20631 0.93675 0.81043 0.88292 0.96801 1.22005 0.96421 1.00427 1.01091 1.21226 1.46172 0.89415 1.02231 0.91839 1.25852 0.93649 1.03001 0.95561 1.70001 1.43277 1.29347 1.12493 0.85122 0.78478 0.76748 0.78668 1.19586 1.19280 1.18935 1.74639 1.17031 1.04692 1.13612 1.44558 1.43765 1.07730 1.07714 1.18178 1.07902 0.99533 0.78880 1.21432 0.96512 0.92236 0.99472 1.21701 0.97610 1.01912 0.89880 1.21826 0.92115 0.90761 1.02546 1.21542 1.02698 0.99859 0.91859 1.18283 0.97648 0.82542 0.94926 1.91541 1.83396 1.45850 1.92238 0.93344 0.87035 0.93825 0.85283 0.85987 0.89172 0.95656 0.93437 0.91644 0.81739 0.79165 0.79558 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.04 -0.59 6.21 29.85 0.19 -0.41 16 3 C 0.23 6.80 7.07 138.07 0.98 7.77 16 4 N -0.48 -19.23 11.41 -180.78 -2.06 -21.29 16 5 C 0.15 6.86 7.98 137.03 1.09 7.95 16 6 C 0.55 30.02 7.95 70.32 0.56 30.58 16 7 O -0.52 -29.96 16.35 19.89 0.33 -29.64 16 8 O -0.34 -19.90 9.87 -56.40 -0.56 -20.46 16 9 C 0.22 13.17 2.56 29.85 0.08 13.25 16 10 H 0.01 0.94 7.16 -2.38 -0.02 0.93 16 11 C -0.14 -7.94 9.33 71.98 0.67 -7.27 16 12 C -0.55 -34.08 8.90 25.60 0.23 -33.85 16 13 H 0.06 3.90 7.81 -2.91 -0.02 3.88 16 14 C 0.02 1.13 5.30 84.65 0.45 1.58 16 15 N -0.91 -54.57 11.32 21.45 0.24 -54.32 16 16 Si 0.99 45.18 29.54 68.60 2.03 47.21 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 N -0.26 -10.99 11.54 -52.48 -0.61 -11.60 16 21 N -0.25 -7.74 3.30 -179.05 -0.59 -8.33 16 22 C 0.04 0.98 5.97 38.14 0.23 1.21 16 23 C -0.08 -0.79 8.31 22.38 0.19 -0.61 16 24 C -0.09 -0.26 10.04 22.26 0.22 -0.03 16 25 C -0.05 -0.19 10.04 22.29 0.22 0.03 16 26 C -0.14 -1.66 10.02 22.29 0.22 -1.44 16 27 C 0.09 1.97 7.27 22.49 0.16 2.14 16 28 F -0.15 -4.93 16.66 44.97 0.75 -4.18 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.13 0.84 5.42 -2.39 -0.01 0.83 16 33 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.09 5.25 6.07 -2.39 -0.01 5.24 16 35 H 0.02 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.17 0.99 7.01 -2.91 -0.02 0.97 16 39 H 0.19 -1.06 8.06 -2.91 -0.02 -1.08 16 40 H 0.19 -0.83 8.06 -2.91 -0.02 -0.85 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -89.99 362.95 6.80 -83.19 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.08 Total: -0.20 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.20 Total: 19.63 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -3.02 Total: -95.54 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.23 Total: -50.10 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.75 Total: -4.18 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -89.99 6.80 -83.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.761 kcal (2) G-P(sol) polarization free energy of solvation -89.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds